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1.
团头鲂微卫星标记的快速制备   总被引:10,自引:0,他引:10       下载免费PDF全文
采用磁珠富集法与放射性杂交相结合开发团头鲂(Megalobrama amblycephala)基因组微卫星资源。以团头鲂基因组DNA为材料,经Sau 3AⅠ限制性内切酶消化后,选取400~900bp的片段进行PCR全基因组扩增,并利用生物素标记的(CA)15探针进行微卫星片段的富集。将得到的片段与T载体连接后转入DH5α大肠杆菌中,然后利用γ-32P标记的放射性同位素探针进行第二轮杂交。结果表明,共获得微卫星基因组文库2000个菌,杂交前菌落PCR检测阳性克隆率为50%;杂交后得到的阳性克隆为230个,占11.5%。从得到的230个阳性克隆中挑出120个进行测序,有94个克隆含有重复次数大于5次的微卫星序列,其中46个(48.94%)有随机侧翼区,可以设计引物;14个缺乏足够的侧翼序列。在得到的微卫星序列中,重复单元除CA/GT外,还观察到CT、AG、CG、CAA、CTCA等重复单元。在单一型标记中,完美础占53.15%,非完美型为37.84%;混合型标记占9.01%。另外,微卫星重复次数主要集中在5-30次,占75.68%。本研究旨在对团头鲂基因组资源的开发利用起到一定的促进作用,并为团头鲂养殖品系的优化、遗传多样性的检测及遗传图谱的构建等奠定基础。  相似文献   

2.
磁珠富集法制备大口鲶的微卫星分子标记   总被引:10,自引:0,他引:10  
通过磁珠富集的方法分离大口鲶(Silurus meriaionalis)的微卫星分子标记。将基因组DNA酶切,梯度离心收集400~900bp片段并纯化,连接Brown接头,用生物素标记的寡核苷酸(CA)15作探针与其杂交,杂交复合物结合到包被有链霉亲和素的磁珠上,然后将这些片段洗脱,PCR扩增,进行克隆构建“基因组文库”,再通过同位素标记的探针(CA)15进行2次杂交筛选,所得到的阳性克隆测序。从所获得593个阳性克隆中选取178个经测序,97.19%(173个)含有微卫星序列,90.60%重复数在10以上,75.98%为完美型。除探针中使用的CA重复单元外,还观察到Cr、GA、ATG的重复序列。设计获得120对微卫星引物,合成40对经PCR筛选,结果31对引物扩增出多态性条带。显示出,磁珠富集法是获得微卫星分子标记的一种有效的方法,可成为今后发展该标记的主要方法。同时,制备出的微卫星标记可为今后研究大口鲶的分子遗传育种提供有用的遗传标记。  相似文献   

3.
磁珠富集法分离草鱼微卫星分子标记   总被引:26,自引:0,他引:26  
孙效文 《水产学报》2005,29(4):482-486
磁珠富集法是一种快速、高效的分离微卫星分子标记的方法。本研究通过该方法分离草鱼的微卫星分子标记。将草鱼(Ctenopharyngodon idella)基因组DNA经Sau3AI酶切,同收纯化400~900bp片段,连上接头,构建“基因组PCR文库”。用生物素标记的简单重复序列(CA)15作探针与其杂交,杂交复合物结合到包被有链霉亲和素的磁珠上,经一系列的洗涤过程,去除磁珠表面不含有微卫星的片段。将吸附在磁珠上的片段洗脱,PCR扩增放大,再进行克隆和测序,根据微卫星两端的保守序列设计引物,即可得到微卫星分子标记。本研究义通过同位素标记的探针(CA)15进行二次杂交筛选,获得阳性克隆132个,所得到的阳性克隆经测序,86.36%含有微卫星序列,共获得130个微卫星DNA序列。用引物设计软件Primer Premier5.0没计引物83对。  相似文献   

4.
应用磁珠富集法构建兰州鲇( Silurus lanzhouensis) CAG重复和GATA重复的微卫星文库,并分析其序列特征。兰州鲇基因组DNA经MseI酶切,选取200~800 bp的片段与生物素标记的探针(CAG)8和(GATA)6杂交,捕获到含有微卫星序列的目的DNA片段连接到pMD19-T载体,转化到大肠杆菌DH5α菌株中构建微卫星富集文库,经PCR检测筛选出阳性克隆进行测序。从126个阳性克隆中随机选取96个进行测序,获得59个微卫星序列( GenBank登录号: KJ545973~KJ545998, KJ598088~KJ598120)。其中完美型31个(52.54%)、非完美型20个(33.9%)、混合型为8个(13.56%)。根据侧翼序列,成功设计48对引物,选取25对微卫星引物在10个个体进行扩增与多态性筛选,共获得10对多态性引物。结果表明,经优化的磁珠富集法能够高效地获得兰州鲇微卫星标记,这些标记将为兰州鲇种质资源保护、微卫星连锁图谱构建、经济性状的QTL定位及分子标记辅助选育奠定基础。  相似文献   

5.
磁珠富集法与小片段克隆法筛选鲤微卫星的比较研究   总被引:34,自引:10,他引:34  
用2种方法克隆黑龙江鲤(Cyprinus(Cyprinus)carpio haonatopterus)的微卫星序列。这2种方法分别是:①经典的小片段DNA克隆库,用末端标记的[γ^-32]ATP的CA重复序列为探针筛选;②将酶切获得的小片段DNA用结合有磁珠的并连接有15个CA重复序列的生物素进行富集,获得的含有CA重复的DNA片段并经过两次PCR扩增再克隆的方法获得富集微卫星片段的克隆库。从前一个方法的克隆库中筛选2000个菌落,获得阳性克隆45个,有22个含有微卫星,完美型的占63.6%,非完美型的占22.7%,混合型的占13.7%,重复次数超过10的有9个,占40.9%;从方法②的克隆库中筛选2600个菌落,获得阳性克隆1300个,测序其中的390个克隆,微卫星314个,完美型的占79.0%;非完美型的占14.3%;混合型的占6.7%,重复次数超过10的有293个,占93.3%。结果表明,用生物素结合磁珠富集法克隆微卫星效率高,成本低,所获微卫星质量高,是一种值得推荐的微卫星制备方法。  相似文献   

6.
合浦珠母贝微卫星DNA标记分离与分析   总被引:1,自引:0,他引:1  
采用生物素标记的(CA)15、(AG)12、(ACA)15、(GATA)8、(GATT)75个探针和磁珠富集法构建马氏珠母贝(Pinctada martensii Dunker)基因组微卫星富集文库。随机挑选500个进行PCR筛选,得到138(27.6%)个候选克隆,测序分析发现130个克隆含有微卫星基重复单元。进一步通过序列比对,最终获得109个具有特异微卫星序列的阳性克隆,其中包含179个微卫星DNA结构域。获得的微卫星序列中,属于完全型序列的有154条,不完全型重复型序列有19条,复合型重复序列有6条。序列长度为70~490bp,平均295bp。微卫星核心序列两碱基重复3到39次,绝大多数序列重复次数大于10。基于微卫星两端的侧翼序列设计并获得了13对能够在马氏珠母贝基因组有效扩增的微卫星引物。本研究旨为进一步开展马氏珠母贝分子育种及资源评价分析提供基础资料。  相似文献   

7.
牙鲆基因组 (CAG)n微卫星 DNA 特征分析   总被引:1,自引:0,他引:1  
通过磁珠富集法筛选牙鲆(Paralichthys olivaceus)的微卫星分子标记,采用限制性内切酶Sau 3A Ⅰ对牙鲆完整基因组DNA进行酶切;通过蔗糖溶液梯度离心,收集400~900 bp大小的片段,连接Brown接头,构建牙鲆基因组文库.用生物素标记的微卫星探针(CAG)15,对基因组文库进行杂交,利用磁珠富集含有微卫星的DNA单链序列,并对其进行PCR扩增;将扩增产物连接到pMD18-T载体后转入感受态大肠杆菌DH5α中,得到微卫星序列文库.利用大量质粒检测法进行二次筛选,成功地从牙鲆基因组中分离出含有CAG重复的微卫星序列,测序其中的3000个单菌落,获得2805个(占93.5%)含有微卫星序列的克隆,其中含有微卫星座位3120个,完美型1808个,占57.97%;非完美型226个,占7.25%;混合型1085个,占34.78%.从中选出186个微卫星序列设计120对引物并合成,经过筛选,74对引物可扩增清晰条带,其中68对呈多态性.  相似文献   

8.
日本蟳微卫星富集文库的建立与多态性标记的筛选   总被引:2,自引:1,他引:1  
采用磁珠富集法筛选日本蟳微卫星分子标记。日本蟳基因组DNA经Sau3 AⅠ酶切后,收集400~1 200 bp大小的片段并纯化,利用生物素标记的寡核苷酸探针(AC)15从中筛选出含有微卫星序列的DNA片段,连接到pMD18-T载体中,构建富集微卫星序列的基因组文库,经PCR检测筛选出阳性克隆进行测序。从随机挑选的970个菌落中筛选出369个阳性克隆进行测序,结果86.99%(321个)含有微卫星序列,其中完美型占80.54%,非完美型占15.95%,混合型占4.28%。除使用的探针AC重复外,还得到GA、CT等重复序列。共设计出102对微卫星引物,其中65对能扩增出清晰条带,27对具有多态性。同时筛选出的微卫星标记可为今后研究日本蟳的分子遗传育种提供有效的遗传标记。  相似文献   

9.
磁珠富集法筛选虾夷扇贝微卫星序列   总被引:15,自引:0,他引:15       下载免费PDF全文
采用生物素-磁珠吸附微卫星富集法,筛选虾夷扇贝(Patinopecten yessoensis)微卫星分子标记,并用同位素法进行二次筛选。结果在筛选的192个菌落中获得136个阳性克隆,经测序分析,获得微卫星序列179个,其中完美型占50.8%,非完美型43.0%,混合型占6.1%。除探针中使用的CA重复外,还得到TC、AG、ACA、CTAT的重复序列。用引物设计软件Primer Premier5.0设计引物85对,挑选其中的40对合成并进行筛选。  相似文献   

10.
贾舒雯  刘萍  韩智科  李健  潘鲁青 《水产学报》2011,35(12):1787-1794
采用人工合成的生物素标记(AG)15探针及磁珠富集法构建了脊尾白虾基因组微卫星富集文库.将脊尾白虾基因组DNA经HaeⅢ酶切后,收集400 ~1 200 bp片段,连接特定接头,与生物素标记(AG)15探针杂交并捕获含有微卫星的DNA片段,然后连接到pMD18-T载体中,构建脊尾白虾微卫星富集文库.随机挑取947个克隆,经菌落PCR检验,其中667个为阳性克隆.从阳性克隆中随机选取184个克隆进行测序,有150个克隆含有微卫星序列,共获得199个微卫星序列,其中完美型158个(79.4%),非完美型27个(13.6%),复合型14个(7.0%).根据微卫星序列,设计了119对微卫星引物,64对扩增出稳定的具有特异性的条带,经30个脊尾白虾个体进行多样性评价后,有26个位点表现出多态性.26个微卫星位点获得的等位基因数从3 ~ 16个不等,平均每个位点扩增得到6.5个等位基因.观测杂合度(Ho)、期望杂合度(4)及多态性信息含量值(PIC)的范围分别为0.111 ~ 0.929、0.246 ~0.932、0.231 ~0.909.本研究开发的微卫星位点将为脊尾白虾种群多样性研究、家系识别和种质鉴定提供有效的工具.  相似文献   

11.
The environmental processes associated with variability in the catch rates of bigeye tuna in the Atlantic Ocean are largely unexplored. This study used generalized additive models (GAMs) fitted to Taiwanese longline fishery data from 1990 to 2009 and investigated the association between environmental variables and catch rates to identify the processes influencing bigeye tuna distribution in the Atlantic Ocean. The present findings reveal that the year (temporal factor), latitude and longitude (spatial factors), and major regular longline target species of albacore catches are significant for the standardization of bigeye tuna catch rates in the Atlantic Ocean. The standardized catch rates and distribution of bigeye tuna were found to be related to environmental and climatic variation. The model selection processes showed that the selected GAMs explained 70% of the cumulative deviance in the entire Atlantic Ocean. Regarding environmental factors, the depth of the 20 degree isotherm (D20) substantially contributed to the explained deviance; other important factors were sea surface temperature (SST) and sea surface height deviation (SSHD). The potential fishing grounds were observed with SSTs of 22–28°C, a D20 shallower than 150 m and negative SSHDs in the Atlantic Ocean. The higher predicted catch rates were increased in the positive northern tropical Atlantic and negative North Atlantic Oscillation events with a higher SST and shallow D20, suggesting that climatic oscillations affect the population abundance and distribution of bigeye tuna.  相似文献   

12.
Previously, we reported 10 PEGE types of 85 tilapia Streptococcus agalactiae(GBS), which shifted from Streptococcus iniae in China, by using PEGE method. Presently, larger and more representative tilapia GBS were isolated, for the ?rst time in China, to characterize their serotypes and genetic diversities more precisely than had done before. 168 GBS strains were distributed in ?ve provinces of China, in which Guangdong, Guangxi and Hainan were the major ones, holding36.9%(62/168), 37.5%(63/168) and 19.6%(33/168), respectively. Serotypes, Ia, Ib and III, were observed in these strains and the most predominant one was Ia(95.2%), which mainly distributed in Guangdong, Guangxi and Hainan. Ia initially occurred in 2009, it shoot up to 32.1% in 2010,but decreased to 16.1% in 2011 before went up to 45.2% in 2012. Ib sporadically occurred during2007–2011, III onlyoccurred in 2012. 14 different PFGE types, including 4 new types(N, O,P and Q), were observed, in which B, D, F and G were the predominant types, holding 83.9%(141/168) of the total GBS strains. Ia corresponded to 11 PFGE types(A–H, N–P), in which type D predominated(51%). Ib represented 3 genotypes(I, J and Q) and III harbored only 2genotypes(N and F). Type N and Fsynchronously presented in Ia and III. In summary, the genetic diversity of tilapia GBS varied by serotypes and changed with geographical locations and years.Although Iastillpredominated, new rareserotypeIII alreadyoccurred in China.  相似文献   

13.
In this experiment, a feeding trial was performed to determine the effects of fructooligosaccharide (FOS) on growth performance, digestive enzyme activity and immune response of Japanese sea bass, Lateolabrax japonicus juveniles (initial weight 38.3 ± 0.5 g), and the fish were examined following feeding with six levels of FOS (0, 0.5, 1, 2, 4 and 6 g/kg) for 28 days. Significant enhancement of weight gain (WG) and specific growth rate (SGR) was found in fish fed 1 g/kg FOS incorporated diets (p < .05), while the feed conversion ratio (FCR) in the 1, 2 g/kg FOS groups reduced significantly compared with the control (p < .05). Besides, the crude lipid in the 4, 6 g/kg FOS groups increased significantly compared with the control (p < .05). On the other hand, the erepsin and lipase activities significantly elevated in intestine of fish fed 2 g/kg FOS (p < .05) and the lysozyme activity in serum of fish fed 2 g/kg FOS were significantly higher than that in the control (p < .05). Moreover, the alkaline phosphatase activities in serum of fish fed 0.5, 1, 2 g/kg FOS were significantly higher than in control (p < .05). Regression analysis showed that the relationships between dietary FOS levels and either SGR, FCR, erepsin or lysozyme activities were best expressed by regression equations, and the optimal inclusion levels are 1.37, 1.80, 3.06, 3.11, 1.93 and 1.80 g/kg for SGR, FCR, erepsin, lipase, lysozyme and total superoxide dismutase activities, respectively. Overall, this study revealed that FOS incorporated diets could beneficial for L. japonicus culture in terms of increasing the growth, digestion and immune activities. Under the present experimental condition, the optimal supplementary level of FOS in the diet of L. japonicus is 1–3 g/kg.  相似文献   

14.
Two gonadotropins (GtH; Qa and Qb) were purified by gel filtration and ion exchange chromatography from the pituitaries of Indian walking catfish (Clarias batrachus). The presence of GtH during purification was assessed by in vitro oocyte maturation and in vivo steroidogenic activity, and their identities were determined by elution profiles, molecular weight, biological activities and yield. The molecular weights of Qa and Qb were 37 and 42 kDa, respectively, and composed of distinct subunits (Qa: 20 and 14 kDa and Qb: 26 and 18 kDa). Polyclonal antibodies raised against Qa immunostained Qa, Qb and pituitary GtH cells. A competitive Qa‐ELISA was developed whose sensitivity was 6.25 ng mL?1 (1.25 ng well?1) with intra‐ (3.5%) and inter‐ (12.4%) assay coefficients of variation. Displacement curves parallel to the standard were obtained with plasma and pituitary extracts of catfish, Qb and carp GtHII. The assay was validated by measuring the plasma Qa levels after LHRH treatment and in relation to ovarian growth in the female catfish during different reproductive phases. Based on the results, Qa and Qb corresponded to fish LH and FSH respectively. The findings will increase the knowledge of the mechanisms controlling fish reproduction and identification of sensitive phases in fish in captivity for hormonal manipulation.  相似文献   

15.
Tetrahymena is a protozoan parasite, which infects guppy, Poecilia reticulata Peters, and causes substantial economical losses in commercial farms worldwide. Studies of guppy infected by Tetrahymena require standardized infection protocols. The LD50 for Tetrahymena infection of guppies by intraperitoneal (IP) injection was calibrated, and the level obtained was 946 parasites per fish. Guppy infection with Tetrahymena by immersion, imitating the natural route of infection via the integument, was studied under normal or stress conditions. Exposure to cold and netting (CNI) and to cold only (CI) followed by immersion exposure to 10 000 Tetrahymena per mL resulted in 22.5% and 19.2% mortality, respectively, as compared to 14.2% and 10% in groups that were netted only (NI) or non‐stressed (I). Histopathology revealed that immersion infection resulted in a systemic infection. Lysozyme levels, measured 3 weeks after infection, were significantly higher in the CNI group (288 μg per mg protein) compared with CI‐, NI‐ and I‐treated groups (94.5, 64 and 62.3 μg mg?1, respectively). There was no evident parasite immobilization activity in body homogenates, suggesting no development of acquired immunity. Re‐infection by IP injection revealed no increase in protection in any of the treatment groups, mortality range of 56.3–75%, higher than in the non‐exposed control (40.6% mortality).  相似文献   

16.
Protein and amino acid composition of the mantle of juvenile O ctopus vulgaris (Cuvier, 1797) during fasting for 27 days were determined. Average protein content of octopus mantle was of 711.19 ± 46.80 g kg?1 DW, and it decreased with increasing fasting days. The non‐essential amino acids content was higher (486.18 ± 11.08 g kg?1 protein) than essential amino acids (425.82 ± 9.15 g kg?1 protein) at the start of the experiment (unstarved animals). The results suggest that the amino acid profile of the mantle where the most abundant amino acids are Arg, His, Lys, Gly, Leu and Pro could indicate a prolonged fasting condition (>20 days) or poor nutrition of O . vulgaris. This study supports the idea of using mantle for metabolic needs of starved O . vulgaris suggesting that the degradation pathway of amino acids to pyruvate and tricarboxylic acid cycle intermediates was favoured contrary to the degradation pathway of ketogenic amino acids. Special considerations should be taken concerning Thr, Ile, Ser, Ala, Asx (Asp, Asn), Glx (Glu, Gln) (because of their fast intake) and Lys and His (due to their stable contents) during a prolonged period of fasting.  相似文献   

17.
There has been growing concern about the overuse of antibiotics in the ornamental fish industry and its possible effect on the increasing drug resistance in both commensal and pathogenic organisms in these fish. The aim of this study was to carry out an assessment of the diversity of bacteria, including pathogens, in ornamental fish species imported into North America and to assess their antibiotic resistance. Kidney samples were collected from 32 freshwater ornamental fish of various species, which arrived to an importing facility in Portland, Oregon from Colombia, Singapore and Florida. Sixty‐four unique bacterial colonies were isolated and identified by PCR using bacterial 16S primers and DNA sequencing. Multiple isolates were identified as bacteria with potential to cause disease in both fish and humans. The antibiotic resistance profile of each isolate was performed for nine different antibiotics. Among them, cefotaxime (16% resistance among isolates) was the antibiotic associated with more activity, while the least active was tetracycline (77% resistant). Knowing information about the diversity of bacteria in imported ornamental fish, as well as the resistance profiles for the bacteria will be useful in more effectively treating clinical infected fish, and also potential zoonoses in the future.  相似文献   

18.
This study investigated the efficiency of iodophor disinfection (135 ppm active iodine for 15–30 min) of non‐hardened Salmo trutta eggs against different groups of bacteria and against fungus. Egg samples were taken from non‐disinfected and from disinfected eggs, microorganisms were cultured on specific nutrient media and their mass was measured by turbidimetric methods. Bacteria and fungus mass of non‐hardened eggs could be reduced but not eliminated by iodophor disinfection with 135 ppm active iodine for 15 min. The extent of reduction was 47–65% (Experiment 1). The efficiency of disinfection increased with disinfection time as the reduction in bacteria and fungus mass was 40–55% after 15 min and 58–74% after 30 min (Experiment 2). Disinfection efficiency of iodophor solution diluted in water (reduction 49–57%) and of iodophor solution diluted in sodium chloride solution iso‐osmolar to the oocytes (reduction 52–61%) was similar (Experiment 3). The reduction in bacteria and fungus mass was persistent as it was 39–72% lower in embryos deriving from disinfected eggs than in embryos deriving from non‐disinfected ones (Experiment 4). In conclusion, the tested disinfection method is inadequate to eliminate pathogens completely but it could positively influence immune defence of eggs and embryos.  相似文献   

19.
The indiscriminate use of antibiotics and chemicals in shrimp hatcheries has led to biomagnification and that in turn could lead to rejection of a whole consignment. The application of the bioencapsulation technique as a tool for curative treatment in shrimp larvae was investigated. Herbs having antibacterial properties such as Solanum trilobatum, Andrographis paniculata and Psoralea corylifolia (methanolic extracts) were bioencapsulated in Artemia and fed to Penaeus monodon post larvae PL 1–25. The post larvae were reared in a medium inoculated with pathogenic bacteria such as Pseudomonas aeruginosa, Staphylococcus aureus, Salmonella typhi and Vibrio sp. Post larvae reared in the non-inoculated water and fed with non-enriched Artemia exhibited 90% survival, highest specific growth rate (12.43%) and reduced bacterial load. P. monodon reared in the bacterial inoculated water and fed with the non-enriched Artemia exhibited the lowest survival (10–30%), specific growth rate (8.42–9.1%) and increased bacterial load (2.86 × 103 to 3.76 × 105 cfu/g). The methanolic extracts of the herbs helped to increase survival and specific growth rate and reduced bacterial load in the P. monodon culture system. Among the three herbal extracts, P. corylifolia enriched Artemia fed post larvae showed the tendency to higher survival (>50%), growth rate (11.5 averaged) and low bacterial load (1.12 × 105 cfu/g). This revised version was published online in August 2006 with corrections to the Cover Date.  相似文献   

20.
Plasma estradiol-17 (E2), testosterone (T), 17,20-dihydroxy-4-pregnen-3-one (DHP) and 17,20,21-tri-hydroxy-4-pregnen-3-one (20-S) levels were measured by radioimmunoassay (RIA) in white perch (Morone americana) and white bass (M. chrysops) that were induced to undergo final oocyte maturation (FOM) with human chorionic gonadotropin (hCG). Plasma DHP levels increased in females of both species in association with oocyte germinal vesicle migration (GVM) and germinal vesicle breakdown (GVBD) and decreased thereafter. Plasma 20-S levels also increased with oocyte GVM in white bass, but were several-fold lower than DHP levels. Circulating E2 and T levels were greatest during GVM and GVBD in both species and decreased to low levels during oocyte hydration and ovulation. Follicles from white perch and white bass which received a priming injection of hCG in vivo, produced both DHP and 20-S in vitro after exposure to hCG and their oocytes underwent GVBD. Ovarian incubates from unprimed fish of either species produced only E2 and T and their oocytes did not complete GVBD. Oocytes from unprimed bass, but not perch, matured when follicles were exposed to hCG in vitro. Both trilostane and cycloheximide blocked in vitro production of DHP and 20-S and oocyte GVBD by white perch follices. DHP and 20-S were equipotent inducers of FOM in the GVBD bioassay. None of several other structurally-related steroids tested were effective within a physiological range of concentrations. These results indicate a role for DHP and 20-S in the control of FOM in white perch and white bass.  相似文献   

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