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为建立绵羊肺腺瘤病毒(JSRV)实时荧光定量PCR检测方法,本研究根据JSRV的ag基因,选取其保守序列作为检测目的片段,设计并合成相应的引物和TaqMan探针,以自然病例的肺肿瘤组织基因组DNA为模板,经PCR扩增目的基因构建重组质粒pMD-gag,并将其作为阳性标准品,梯度稀释建立标准曲线,得到扩增方程为:y=-0.304x+38.4,扩增效率为100％,线性相关系数为0.999,该方法最低检出量为103拷贝,与其它病原核酸样品无交叉反应,其变异系数在1.374％以内.本研究为快速检测JSRV以及组装检测试剂盒奠定了基础. 相似文献
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绵羊肺腺瘤（OPA）是由β-反转录病毒属绵羊肺腺瘤病毒（JSRV）引起的一种肿瘤性传染病,该病潜伏期长,经呼吸道传播,冬季圈养种羊发病率高,目前无治疗措施,病死率为100%。OPA的持续存在对种羊生产形成了潜在威胁并造成较大经济损失,严重危害养羊业健康发展。所以,对OPA的早期精确诊断是防制本病的前提,尤其是在出入境检验检疫过程中对进出口羊的JSRV检测尤为重要。随着分子生物学技术的不断发展,JSRV分子生物学检测方法也得到不断的创新和改进。作者就近年来针对检测JSRV的聚合酶链式反应（PCR）、核酸探针杂交技术、酶联免疫吸附试验（ELISA）、环介导等温扩增技术（LAMP）等方法的研究概况作一综述,为寻找快速准确并适用于出入境检疫的JSRV检测方法和进一步发展研究新型JSRV检测方法提供参考。 相似文献
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绵羊基因组中内源性绵羊肺腺瘤病毒相关序列的确定 总被引：1，自引：0，他引：1
绵羊都含有与绵羊肺腺瘤病毒(Jaagsiekte sheep retrovirus,JSRV)密切相关的15~20拷贝内源性绵羊肺腺瘤病毒(enJSRV)相关序列。宿主可利用内源性病毒来预防致病性反转录病毒的感染,一些内源性病毒可以有效地干扰相关外源性病毒的复制。本试验通过分子生物学手段确定了蒙古绵羊基因组中含有enJSRV6和enJSRV10两个内源性病毒基因而内蒙古白绒山羊中未发现。通过比较内、外源病毒LTR序列的酶切图谱,获得专一作用外源性病毒的核酸内切酶M spⅠ、TfiⅠ、BsaWⅠ,如果将酶切与聚合酶链式反应(PCR)相结合,不需要经过测序就可分辨enJS-RV和外源性绵羊肺腺瘤病毒(exJSRV),形成"酶切-PCR"检测技术,将为绵羊肺腺瘤病的快速诊断提供了新的手段。 相似文献
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为深入研究绵羊肺腺瘤病毒(JSRV)与绵羊肺腺瘤病(OPA)发病关系,本研究采用PCR方法从pGEX-4T-1-TM重组质粒中扩增编码JSRV跨膜蛋白(TM)的基因序列,并引入标签多肽HA序列和限制性内切酶位点,将其重组至真核表达载体pcDNA3.1(+)中,构建了重组质粒pcDNA-TM-HA.通过转染HepG2细胞并用G418筛选,对稳定表达TM的阳性细胞进行纯化,获得了稳定表达JSRV tm基因的HepG2细胞系.间接免疫荧光及western blot检测结果表明,重组蛋白TM-HA在HepG2细胞中得到正确表达.JSRV TM蛋白稳定表达细胞系的建立为进一步研究该蛋白与JSRV诱导OPA发病关系提供了重要的实验平台. 相似文献
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根据GenBank登录的绵羊肺腺瘤病毒gag基因序列设计1对特异性引物，经RT—PCR扩增出了276bp的片段。产物经回收与pMD18-TVector连接后转化到基因工程菌DH5a中，提取重组质粒，经PCR及测序鉴定后，作为阳性模板建立SYBRGreenI荧光定量PCR标准曲线，并做敏感性试验、特异性试验、重复性试验和临床检测应用。结果表明，标准曲线循环阈值与模板浓度呈良好的线性关系，产物Tm在82～82．5℃之间，灵敏度为2．22个拷贝／μL，特异性和重复性较好，较常规RT—PCR方法提前1h出检测结果。本试验建立了检测JSRV的SYBR—GreenI荧光定量PCR方法，为该病的早期快速诊断，并定量分析JSRV感染程度奠定了基础。 相似文献
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对呼和浩特市四子王旗某种羊场的疑似绵羊肺腺瘤病的4只病羊,通过临床诊断、病理组织学观察,PCR、RT-PCR和半巢式PCR技术对疑似病羊进行检测诊断.结果显示:(1)"小推车试验"时有鼻液流出;(2)剖检时可见肺肿大实变,切开肺脏时可见大量泡沫状液体从切面渗出;(3)病理组织学观察肺脏有大小不一的腺瘤灶,而且肺泡上皮细胞呈乳头状增生;(4)根据GenBank中登录的绵羊肺腺瘤病毒全序列(AF105220),设计合成3对特异性引物和3条巢式引物,经RT-PCR、PCR及半巢式PCR法扩增并测序,利用RT-PCR和PCR分别扩增出与预期大小一致的条带U3(175 bp)、env(225 bp)、gag(300 bp),序列分析表明与引起该病的绵羊肺腺瘤病毒序列同源性较高,分别达97.2%、96.5%、94.4%.应用半巢式引物扩增片段分别为U3(133 bp)、env(178 bp)、gag(275 bp).经过以上方法确诊该羊场的疑似病例为绵阳肺腺瘤病. 相似文献
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内源性绵羊肺腺瘤病毒NM株gag基因的克隆、序列分析及蛋白结构预测 总被引：2，自引：0，他引：2
提取内源性绵羊肺腺瘤病毒内蒙古分离株（NM）总DNA，参照GenBank中内源性绵羊肺腺瘤病毒enJS56A1株gag基因序列设计1对引物。应用PCR技术特异性地扩增出病毒的gag基因片段，将其克隆到pMD19-T载体中进行测序得到完整的gag基因序列，并用DNAStar软件进行序列分析，分析结果表明，与内源性南非代表毒株enJS56A1（AF153615）的gag基因序列比较，核苷酸同源性为98．9％，推导出的氨基酸同源性为98．4％。与外源性美国代表株JSRV21（AF105220）的gag基因序列比较，核苷酸同源性为89．6％，氨基酸同源性为94．8％。利用生物信息学软件对其蛋白结构进行预测，结果表明gag-enJSRV-NM为一结构松散的蛋白分子，这也是我国首次报道的内源性绵羊肺腺瘤病毒的gag基因的全序列，为我国科研工作者进行更深入的研究奠定了基础。 相似文献
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Criado-Fornelio A Buling A Cunha-Filho NA Ruas JL Farias NA Rey-Valeiron C Pingret JL Etievant M Barba-Carretero JC 《Veterinary parasitology》2007,150(4):352-356
With the aim to improve current molecular diagnostic techniques of Hepatozoon sp. in carnivore mammals, we developed a quantitative PCR (qPCR) assay with SYBR Green I®. The method, consisting of amplification of a 235 bp fragment of the 18S rRNA gene, is able to detect at least 0.1 fg of parasite DNA. Reproducible quantitative results were obtained over a range of 0.1 ng–0.1 fg of Hepatozoon sp. DNA. To assess the performance of the qPCR assay, DNA samples from dogs (140) and cats (50) were tested with either standard PCR or qPCR. Positive samples were always confirmed by partial sequencing of the 18S rRNA gene. Quantitative PCR was 15.8% more sensitive than standard PCR to detect H. canis in dogs. In cats, no infections were detected by standard PCR, compared to two positives by qPCR (which were infected by H. canis as shown by sequencing). 相似文献
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Quantification of total bacteria, enterobacteria and lactobacilli populations in pig digesta by real-time PCR 总被引：2，自引：0，他引：2
Castillo M Martín-Orúe SM Manzanilla EG Badiola I Martín M Gasa J 《Veterinary microbiology》2006,114(1-2):165-170
Jejunum digesta samples were taken from weaning pigs in order to evaluate real-time PCR (qPCR) as a method for quantifying pig gut bacteria. Total bacteria, lactobacilli and enterobacteria were quantified by qPCR and the results were compared with those obtained with traditional methods: 4',6-diamidino-2-phenylindole (DAPI staining) for total bacteria, selective culture for lactobacilli and enterobacteria. Real-time PCR showed higher values in terms of 16S rRNA gene copies than DAPI counts or CFU. Despite the differences, the lactobacilli:enterobacteria ratio was similar between methods (2.5 +/- 0.58 for qPCR and 3.1 +/- 0.71 for selective culture, P = 0.39). Possible reasons for the higher PCR counts are discussed considering both an overestimation with PCR by quantification of dead bacteria or free DNA and also an underestimation with conventional methods. Inherent differences in the pre-treatment of the samples could partially explain the discrepancies observed. Regardless of the numerical differences between methods, values obtained by qPCR and traditional methods showed a significant correlation for lactobacilli and total bacteria. In the light of these results, real-time PCR seems a valid method to quantify microbial shifts in the gastrointestinal tract. 相似文献
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A Real-time quantitative PCR method was developed for the rapid detection of enterohemorrhagic Escherichia coli （EHEC） O157∶H7 based on the primers and TaqMan probes which were designed for the conservative domain of rfbE gene of EHEC O157∶H7.The results showed that the sensitivity of Real-time PCR was 7.3 CFU/mL.20 from 310 samples of meat,egg,milk and its products,animal diarrhea materials and artificial contamination samples were positive detected by Real-time PCR assay,which was in accordance with the testing result according to AOAC standard.The results indicated that Real-time PCR assay was a sensitive,rapid and simple tool. 相似文献
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To establish a rapid assay for detection of Vibrio parahaemolyticus(VP), Real-time PCR method was developed targeting to toxR gene of Vibrio parahaemolyticus.The results showed that the test for 15 bacteria strains using the Real-time PCR method, only Vibrio parahaemolyticus test was positive, indicating that the method had high specificity.In addition, the sensitivity of Real-time PCR was 4.9 CFU/mL.Furthermore, a total of 3 positive samples for Vibrio parahaemolyticus were detected from 150 clinical samples by the Real-time method, which was in accordance with the testing result by GB 4789.7-2013 standard detection protocol.Therefore, the Real-time method provided a novel rapid and sensitive detection method with good practicality for Vibrio parahaemolyticus infection. 相似文献
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为建立检测副溶血弧菌(Vibrio parahaemolyticus,VP)的快速检测方法,本研究以VP toxR基因为靶基因设计合成引物及TaqMan探针,建立了实时荧光定量PCR快速检测VP的方法。结果显示,对15株试验菌株进行实时荧光定量PCR检测,只有VP检测为阳性,表明该检测方法特异性强;该方法的灵敏度为4.9 CFU/mL,利用该检测方法对采集的150份样品进行检测,共计检出3份VP阳性样品,与国标法(GB 4789.7-2013)检测结果一致,显示了良好的实用性。该检测方法灵敏度高、特异性强,具有良好的实用性。 相似文献
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为建立鸽白细胞介素8（interleukin-8,IL-8）基因实时荧光定量PCR检测方法,本研究根据GenBank上公布的鸽IL-8基因序列,在保守区域设计1对特异性引物,以鸽子淋巴细胞提取的核酸为模板扩增鸽IL-8基因部分片段并克隆到pMD18-T载体上。提取重组质粒通过系列制备标准品,建立鸽IL-8基因SYBR GreenⅠ染料法实时荧光定量PCR标准曲线,并进行特异性、敏感性和重复性试验。结果显示,实时荧光定量PCR熔解曲线呈单一熔解峰,试验线性相关系数为1.0,IL-8基因的扩增效率为103%。敏感性结果显示最低可检测到16个拷贝数;用该方法检测其他鸽白细胞介素细胞因子（IL-1β、IL-6、IL-18）和双蒸水的结果均为阴性。批间、批内变异系数均≤1.52%。因此,本研究建立的实时荧光定量PCR检测方法可用于鸽IL-8 mRNA的检测,为病毒感染宿主细胞后细胞因子表达的定量分析奠定基础。 相似文献
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PAN Chao WEI Tian-chao NONG Hai-lian LI Xiu-feng JIANG Gui-lin YUAN Ya-dong CHENG Er-cai MO Mei-lan WEI Ping 《中国畜牧兽医》2016,43(10):2547-2552
To develop a quantitative Real-time PCR method for detection of pigeon interleukin-8 (IL-8),a pair of specific primers was designed based on the conserved region of IL-8 gene sequence published on GenBank.A fragment of IL-8 gene was amplified from the pigeon lymphocytes template and cloned into pMD18-T vector.Plasmid DNA was extracted from the bacteria and was serially diluted to serve as a standard.A standard curve for the SYBR Green Ⅰ of quantitative Real-time PCR was established and the specificity,sensitivity and reproducibility of this assay were investigated.The results showed that the quantitative Real-time PCR melting curve only had one single melting peak.The assay was linear with R2 values was 1.0;The reaction efficiency for the pigeon IL-8 gene was 103%.The detection limit of this assay was 16 copies per reaction.Other interleukin including IL-1β,IL-6 and IL-18 and double distilled water control were tested by this assay and the results were all negative.The CV values of intra- and inter-assay were less than 1.52%.The established quantitative Real-time PCR assay of this study was suitable for the detection of pigeon IL-8.It would provide basis for analyzing cytokine expression quantitatively after the host cell was infected by the virus. 相似文献
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为建立鸡传染性贫血病毒(chicken infectious anemia virus,CIAV)的实时荧光定量PCR检测方法,本试验通过CIAV基因组保守区域设计1对扩增片段大小为180bp的特异性引物,构建pGM-T-CIAV重组质粒,制备阳性标准品,建立SYBR GreenⅠ实时荧光定量PCR标准曲线,并进行敏感性试验、特异性试验和重复性试验。结果显示,CIAV的Ct阈值与标准品浓度在5.33×108至5.33×103拷贝/μL间呈良好的线性关系,相关系数R2=0.998,斜率为-3.443,产物Tm值在86℃左右。该方法与网状内皮组织增生病病毒(REV)、禽白血病病毒(ALV)J亚型、马立克氏病病毒(MDV)、传染性法氏囊病病毒(IBDV)基因组均无交叉反应,敏感性为5.33拷贝/μL,比普通PCR高1 000倍,批内和批间重复试验变异系数均小于3%。结果表明,本试验建立的CIAV SYBR GreenⅠ实时荧光定量PCR检测方法可实现对鸡传染性贫血病的早期诊断及感染程度的定量分析的检测。 相似文献
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ZHAO Xueli LIU Yi BAN Fuguo YAN Ruoqian WANG Huajun WANG Shujuan MA Zhenyuan WANG Dongfang 《中国畜牧兽医》2018,45(8):2086-2094
This study was aimed to establish a double TaqMan MGB Real-time PCR assay to simultaneously and specifically detect canine distemper virus (CDV) and canine parvovirus (CPV) in one reaction.Two pairs of specific primers for CDV and CPV,along with two TaqMan MGB probes for each virus were designed in the assay basing on CDV H gene and CPV VP2 gene sequences.The specificity,sensitivity and repetition of the double TaqMan MGB Real-time PCR assay were tested,and 48 samples taken from clinic suspicious CDV and CPV infected canines had been testified by the established double TaqMan MGB Real-time PCR.The results indicated that the doulde TaqMan MGB Real-time PCR assay was successfully established,and the number of standard curve correlation (R2) of CDV and CPV were 0.997 and 0.993,respectively.The specificity of the double TaqMan MGB Real-time PCR assay revealed that amplifications were showed on CDV and CPV samples,but other pathogens and negative controls had no amplifications;The sensitivity of CDV and CPV were both 10 copies/μL.Meanwhile,14 CDV positive samples,19 CPV positive samples and 4 CDV/CPV double positive samples were detected,which were consistent with the results of the sequencing.Therefore,the established double TaqMan MGB Real-time PCR assay had high sensitivity,specificity and flux accurate quantitative,which could be applied to clinical CDV/CPV infection each periods. 相似文献
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单核细胞增生李斯特氏菌实时荧光定量PCR快速检测方法的建立 总被引：1，自引：0，他引：1
为建立单核细胞增生李斯特菌(Listeria monocytogenes,LM)的快速检测方法,本研究以LM iap基因为靶基因设计合成引物及TaqMan探针,建立实时荧光定量PCR快速检测LM的方法。结果显示,对15株试验菌株进行实时荧光定量PCR检测,只有LM菌株检测为阳性,表明该检测方法特异性强;该方法的灵敏度为6.5 CFU/mL;稳定性和重复性试验结果表明,同一样品重复检测4次Ct值的变异系数均小于2%;利用该检测方法对采集的139份样品进行检测,共计检出3份LM阳性样品,与国标法(GB 478930-2010)检测结果一致。该检测方法灵敏度高、特异性强、重复性好,具有良好的实用性。 相似文献