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1.
【目的】本研究以猪种布鲁氏菌Toll/白介素-1受体(TIR)结构域蛋白(Brucella suis TIR domain containing protein, Bs-TDCP)为研究对象,进行基因克隆、生物信息学分析及蛋白互作研究,为后续开发适合动物或人类使用的有效布鲁氏菌疫苗奠定基础。【方法】利用GenBank数据库查找黑腹果蝇髓样分化因子88(Dm-MyD88)和人MyD88(Hs-MyD88)基因序列,设计特异性引物进行基因序列扩增。根据猪种布鲁氏菌测序结果,获得Bs-TDCP基因序列。通过ExPASy、SWISS-MODEL、TMHMM、SMART等在线工具分析Bs-TDCP蛋白理化性质、二级和三级结构、跨膜及功能结构域,并进一步研究Bs-TDCP蛋白与Toll样受体(TLRs)信号通路的关键胞内配体MyD88分子之间的蛋白串扰。【结果】猪种布鲁氏菌TIR结构域蛋白Bs-TDCP基因的开放阅读框(ORF)大小为828 bp,编码275个氨基酸,其中丙氨酸占12.7%,分子式为C1345H2196N390O 相似文献
2.
《中国兽医杂志》2015,(5)
根据嗜水气单胞菌的溶血素(Hly A)、外膜蛋白(Omps)及丝氨酸蛋白酶(Ahp A)基因,分别设计3对特异性引物。通过3重PCR法对三对基因进行克隆与生物信息学分析。溶血素、外膜蛋白及丝氨酸蛋白酶基因的开放阅读框分别为1 863 bp、1 071 bp及894 bp,分别编码621、357及298个氨基酸。同时,对其氨基酸序列进行系统进化树构建、蛋白理化性质分析、蛋白信号区域和结构区域分析、蛋白二级结构预测、蛋白三级结构预测及蛋白免疫原性分析。本研究对大鲵源致病性嗜水气单胞菌主要毒力基因进行生物信息学分析,为进一步研究嗜水气单胞菌保护性抗原多样性而提供理论基础。 相似文献
3.
羊布鲁氏菌16M基因组分泌蛋白的生物信息学分析 总被引：3，自引：1，他引：2
对羊布鲁氏菌全基因组16M中全部3 197个氨基酸序列进行生物信息学分析.利用SignalP和TatP软件分析N-端信号肽,结果显示具有N-端信号肽的序列有288个;继而用TMHMM和Phobius软件对这288个序列进行跨膜区预测,得到不含跨膜区的蛋白208个;最后利用LipoP对这208个蛋白进行分类,得到具有信号肽的蛋白191个.使用SecretomeP软件对被预测为无信号肽的蛋白质进行分析,结果显示有391个可能通过非经典途径分泌.由于分泌蛋白在细菌的致病过程中起着重要作用,而布鲁氏菌基因组编码的大多数蛋白的功能尚未确定,因此分析和预测布鲁氏菌的分泌蛋白可为更完整地、系统地研究布鲁氏菌的分子致病机理提供非常重要的信息. 相似文献
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本试验旨在研究绵羊和人的主要组织相容性复合体(MHC)DRB1基因外显子2(exon2)单核苷酸多态性(SNPs)和单氨基酸多态性(SAPs),并进行生物信息学分析。运用生物基因组学数据库,利用生物信息学及比较基因组学方法对人与绵羊MHC-DRB1基因exon2序列多态性进行分析,采用生物信息学软件对绵羊MHC-DRB1的蛋白质结构及生物学功能进行预测和分析。结果显示,人主要组织相容性复合体(HLA)和绵羊主要组织相容性复合体(OLA)的DRB1 exon2均存在丰富的SNPs位点和SAPs位点,单一多态位点和简约多态位点数不尽相同,二者相比仅有14个SNPs位点相同,其余位点均不同。序列分析结果表明,二者MHC-DRB1 exon2序列具有高度相似性。进一步生物信息学分析结果显示序列变异引起的单氨基酸变化引发了蛋白质二级结构和三级结构的改变,可能因此会引起基因功能的异常,从而引发抗病性和疾病易感性的变异。 相似文献
5.
试验旨在对布鲁氏菌S19毒力因子A（BvfA）基因进行克隆及原核表达,并对其编码的BvfA蛋白结构进行生物信息学分析。登录GenBank下载布鲁氏菌S19的1号染色体（登录号：CP030751.1）,根据文献报道的布鲁氏菌S19 BvfA基因的位置和BvfA蛋白的分子质量,在NCBI的ORF Finder中预测编码BvfA蛋白的开放阅读框（ORF）,根据ORF预测的BvfA基因设计扩增BvfA基因的引物,克隆该序列并连接到表达载体pET-32a（+）上,构建重组质粒pET-32a（+）-BvfA,并诱导其在大肠杆菌BL21（Ril）感受态细胞中表达,表达产物经SDS-PAGE和Western blotting验证,并用生物信息学方法对BvfA蛋白结构进行在线预测。结果显示,BvfA基因ORF全长为336 bp,表达纯化得到分子质量为11 ku的分泌型BvfA蛋白;生物信息学分析显示,BvfA蛋白属于不稳定的亲水性蛋白,无跨膜结构,第1-28位氨基酸处存在信号肽区域,BvfA蛋白55.6%定位于细胞外,有12个可能的磷酸化位点,无O-糖基化位点,BvfA蛋白二级结构主要由α-螺旋和无规则卷曲组成。以上结果可为后续研究BvfA蛋白在布鲁氏菌中的致病机制及寻找布鲁氏菌病新的治疗靶点提供一定的参考。 相似文献
6.
为了检测荷斯坦牛二酰基甘油酰基转移酶1(diacylglycerol acyltransferase 1,DGAT1)基因外显子8的单核苷酸多态性(SNPs)位点,预测分析碱基突变对蛋白质结构和功能的影响,并讨论不同物种间DGAT1的进化关系。本研究利用PCR-SSCP综合测序方法检测DGAT1基因外显子8的SNPs位点,用生物信息学方法分析DGAT1蛋白的基本性质和结构功能,并分析不同物种间DGAT1氨基酸同源性及构建其进化树。PCR-SSCP分析结果显示,DGAT1基因外显子8存在1个双突变位点,即M694和M695;蛋白质结构和功能预测结果显示,该双突变不影响蛋白质的理化性质和结构,但能引起蛋白质功能域组成发生改变;进化分析结果显示,荷斯坦牛DGAT1氨基酸序列与绵羊同源性最高(99.1%),与黑猩猩同源性最低(65.3%)。 相似文献
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本研究旨在构建表达载体pET-30a-VjbR,进而表达布鲁氏菌VjbR蛋白;利用生物软件分析该蛋白生物信息学信息,为进一步研究该蛋白奠定基础。以布鲁氏菌Rev.1株基因组为模板,扩增VjbR基因序列,将其克隆至原核表达载体pET-30a(+)中,获得重组质粒pET-30a-VjbR,并进行原核表达、Western-blot检测及该基因的生物信息学分析。结果显示:本试验成功克隆并表达了VjbR基因;经对表达产物进行SDS-PAGE分析纯化,发现本试验得到较纯蛋白;经Western-blot检测,发现该基因表达蛋白可与布鲁氏菌羊阳性血清发生特异性反应,具有良好的反应原性;通过生物信息学系列软件统计分析,发现VjbR蛋白无跨膜区,无信号肽,且该蛋白共有15个抗原决定簇,在二级结构中,α-螺旋的氨基酸有131个,占比为49.81%。布鲁氏菌VjbR基因的成功表达与纯化,为进一步制备该蛋白的单克隆抗体及iELISA诊断试剂盒的研制奠定了基础。 相似文献
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本研究利用RT-PCR方法分段克隆水牛TLR4 cDNA后拼接成全长,并克隆于pMD20-T载体中,同时运用生物信息学软件对其核苷酸序列及编码蛋白质的结构进行分析和预测。结果表明,克隆的TLR4 cDNA ORF全长2526 bp,共编码841个氨基酸,N端具有由25个氨基酸组成的信号肽,该蛋白预测的分子质量为95.98 ku,等电点为6.37;水牛TLR4与GenBank中登录的水牛TLR4(DQ857349)核苷酸序列同源性达99.01%,与黄牛、绵羊、野猪、马、人和黑猩猩的同源性超过80%,与小鼠和狗的同源性次之,分别为72.17%和61.30%,与鸡的最低,仅为53.94%;该蛋白是由胞外区(1-634位氨基酸)、跨膜区(635-657位氨基酸)和胞内区(658-841位氨基酸)3部分构成的跨膜蛋白,胞外区含有12个LRR串联重复结构域、胞内区具有TIR结构域。本试验成功克隆了水牛TLR4 cDNA全长,并获得了核苷酸及其蛋白质的生物信息学分析数据,为进一步研究其功能奠定了基础。 相似文献
10.
试验旨在研究Toll样受体2(Toll-like receptor,TLR2)基因的多态性及其与中国美利奴羊布鲁氏菌病易感性的相关性。利用生物信息学方法对NCBI上公布的绵羊TLR2基因序列进行比对,选出多态位点丰富的片段进行扩增,运用PCR-SSCP的方法对206个中国美利奴布鲁氏菌病阴性样本和80个中国美利奴羊布鲁氏菌病阳性样本进行TLR2基因的多态性检测,然后对不同等位基因的PCR产物进行测序,确定该基因的多态性位点,经卡方检验分析每个SNP位点的等位基因频率、基因型频率及其多态性与布鲁氏菌病易感性的相关性,利用生物信息学软件分析RNA二级结构及蛋白质的二级结构。结果表明,在279bp的序列中共检测到3个SNPs,分别为:C1731T、G1737C和G1749T,均未引起对应氨基酸的改变,属于无义突变。这些位点在病例组和对照组之间的等位基因频率及基因型频率均不存在显著差异(P0.05)。各突变位点均能引起RNA二级结构和最小自由能的改变,而蛋白质的二级结构均未改变。由此得出,中国美利奴羊TLR2基因的3个SNPs位点(C1731T、G1737C和G1749T)与中国美利奴羊布鲁氏菌病易感性无相关性。 相似文献
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试验首次克隆了绵羊CS-3基因序列,预测了CS-3蛋白的结构、功能及其特点,并分析了其在不同组织中的表达情况及CS-3基因与肉质性状的相关性。结果显示,CS-3基因cDNA全长838 bp,完整的开放阅读框(ORF)为70-804 bp,编码244个氨基酸。氨基酸序列中存在3个保守结构域,蛋白质二级结构以无规卷曲和α-螺旋为主,富含疏水区,存在多个磷酸化位点和1个蛋白激酶C(protein kinase C,PKC)的磷酸化位点。通过实时荧光定量RT-PCR技术分析了CS-3基因在凉山半细毛羊部分组织中的表达情况。结果表明,CS-3基因主要在凉山半细毛羊的心脏和肌肉中表达,15 d时各组织中心脏的表达量最高,极显著高于其它各组织(P＜0.01);在心脏和肌肉组织中,CS-3基因的表达量随着年龄的增长而减少,其中在60 d时心脏中的表达量最高。 相似文献
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The galE gene of Streptomyces lividans was used to probe a cosmid library harbouring Brucella melitensis 16M DNA and the nucleotide sequence of a 2.5 kb ClaI fragment which hybridised was determined. An open reading frame encoding a predicted polypeptide with significant homology to UDP-galactose-4-epimerases of Brucella arbortus strain 2308 and other bacterial species was identified. DNA sequences flanking the B. melitensis galE gene shared no identity with other gal genes and, as for B. abortus, were located adjacent to a mazG homologue. A plasmid which encoded the B. melitensis galE open reading frame complemented a galE mutation in Salmonella typhimurium LB5010, as shown by the restoration of smooth lipopolysaccharide (LPS) biosynthesis, sensitivity to phage P22 infection and restoration of UDP-galactose-4-epimerase activity. The galE gene on the B. melitensis 16M chromosome was disrupted by insertional inactivation and these mutants lacked UDP-galactose-4-epimerase activity but no discernible differences in LPS structure between parent and the mutants were observed. One B. melitensis 16M galE mutant, Bm92, was assessed for virulence in CD-1 and BALB/c mice and displayed similar kinetics of invasion and persistence in tissues compared with the parent bacterial strain. CD-1 mice immunised with B. melitensis 16M galE were protected against B. melitensis 16M challenge. 相似文献
14.
金黄色葡萄球菌是一种重要的人畜致病菌,IsdD属于金黄色葡萄球菌Isd系统中的重要成员。本研究根据GenBank报道的金黄色葡萄球菌IsdD基因序列设计一对特异性引物,以金黄色葡萄球菌基因组DNA为模板扩增出目的片段IsdD,将其用NcoⅠ和XhoⅠ双酶切后连接到载体pET32a(+)上,构建重组质粒pET32a(+)-IsdD。序列分析结果显示,目的基因序列与网上的IsdD序列相比核苷酸序列和氨基酸序列同源性均在98%以上。将鉴定正确的重组质粒转化到大肠杆菌E.coli BL21中并成功诱导表达出大小为61.3 ku的蛋白,这为下一步研究IsdD蛋白的结构和功能奠定了良好基础。 相似文献
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Brucella melitensis Rev 1 organisms were salt-extracted and the cell surface proteins (BCSPs) were found to be mainly 39-42 kDa (group 2 porin proteins) in addition to 31.6, 32.5, 58.5 and 14.7 kDa proteins. DEAE-Sephadex anion-exchange column chromatography of BCSPs yielded fraction 1, which contained one major protein (39.8-42.0 kDa) and a minor protein (31.6 kDa). All these proteins were found to be immunogenic by Western blotting. Fraction 1 along with monophosphoryl lipid A and trehalose dicorynomycolate adjuvants as well as BCSPs alone induced significant (p < or = 0.05) protection in BALB/c mice. Both these immunizing agents produced almost equivalent protection to live B. melitensis Rev 1 vaccine at 15 and 30 days post challenge. Lymphocyte stimulation test as well as delayed-type hypersensitivity reaction revealed that both these preparations induced cell-mediated immune response. These preparations also induced humoral immune response as indicated by indirect ELISA. Neither of the immune responses was significantly less (p < or = 0.05) than that with live B. melitensis Rev 1 vaccine, except that their duration was short. 相似文献
16.
Minas A Stournara A Minas M Papaioannou A Krikelis V Tselepidis S 《Veterinary microbiology》2005,111(3-4):211-221
Fluorescence polarization assay (FPA) is a new test for the serological diagnosis of Brucella spp. infection in animals. The FPA is validated for the diagnosis of B. melitensis infection in sheep. For this purpose, 166 sera originated from natural infected sheep (verified by culture) and 851 sera originated from healthy animals (reared in areas where B. melitensis was never been isolated) were tested. The optimum cut-off value that offers the highest diagnostic sensitivity (DSn) and diagnostic specificity (DSp) was determined at 87mP with the use of ROC analysis. The DSn and DSp of FPA using this cut-off value are calculated at 97.6 and 98.9% with a 95% confidence interval (CI) of 93.9-99.3% and 98.0-99.5%, respectively. The DSn and DSp of FPA have been assessed also using as positive reference (n=587), sera that gave positive results at least in two tests used for diagnosis of B. melitensis in sheep as Rose Bengal Test (RBT), modified Rose Bengal Test (m-RBT), complement fixation test (CFT), indirect Elisa (i-Elisa) and competition Elisa (c-Elisa) originated from animals reared in flocks infected by B. melitensis. The optimum cut-off value using the above panel of positive reference sera was the same offering a DSn of 95.9% with a 95% CI, 94.0-97.4%, since the DSp remains the same. The DSn and DSp as well as performance, accuracy and agreement of FPA's result were compared with those of other tests used. The accuracy of FPA is very high, similar with that of i-Elisa. FPA is a promising assay, which offers a DSn and accuracy better that of those of the tests currently approved for the diagnosis of B. melitensis in sheep and goats. Due to its simplicity, the sort time that results can be obtained and its accuracy it can be used and improve the laboratory testing capacity as well as the efficacy of the eradication program based on test-and-slaughter policy. 相似文献
17.
De Hertogh B Lahlimi L Lambert C Letesson JJ Depiereux E 《Veterinary microbiology》2008,127(3-4):369-378
The genome sequences of three Brucella biovars and of some species close to Brucella sp. have become available, leading to new relationship analysis. Moreover, the automatic genome annotation of the pathogenic bacteria Brucella melitensis has been manually corrected by a consortium of experts, leading to 899 modifications of start sites predictions among the 3198 open reading frames (ORFs) examined. This new annotation, coupled with the results of automatic annotation tools of the complete genome sequences of the B. melitensis genome (including BLASTs to 9 genomes close to Brucella), provides numerous data sets related to predicted functions, biochemical properties and phylogenic comparisons. To made these results available, alphaPAGe, a functional auto-updatable database of the corrected sequence genome of B. melitensis, has been built, using the entity-relationship (ER) approach and a multi-purpose database structure. A friendly graphical user interface has been designed, and users can carry out different kinds of information by three levels of queries: (1) the basic search use the classical keywords or sequence identifiers; (2) the original advanced search engine allows to combine (by using logical operators) numerous criteria: (a) keywords (textual comparison) related to the pCDS's function, family domains and cellular localization; (b) physico-chemical characteristics (numerical comparison) such as isoelectric point or molecular weight and structural criteria such as the nucleic length or the number of transmembrane helix (TMH); (c) similarity scores with Escherichia coli and 10 species phylogenetically close to B. melitensis; (3) complex queries can be performed by using a SQL field, which allows all queries respecting the database's structure. The database is publicly available through a Web server at the following url: http://www.fundp.ac.be/urbm/bioinfo/aPAGe. 相似文献
18.
L M Ribeiro S Herr F Chaparro F H van der Vyver 《The Onderstepoort journal of veterinary research》1990,57(2):143-144
Brucella melitensis biotype 1 was isolated in pure culture from the lungs, liver, spleen, kidney, stomach contents, abomasum and brain of an aborted caprine (Boer goat) foetus in the district of Cullinan near Pretoria. The 18 does and 1 ram in the flock of Boer goates were examined serologically by means of the complement fixation (CF) test, using Brucella abortus antigen. Six weeks later they were examined again, using B. abortus as well as B. melitensis biotype 1 antigens. No significant differences were found between the 2 CF tests using B. abortus antigen, or between the results obtained by using the B. abortus and B. melitensis antigens. Twelve goats, showing CF antibody titres, were slaughtered and examined bacteriologically. No relationship was found between the serological and bacteriological results. 相似文献
19.
P M Pieterson B Gummow S Pefanis C G Venter S Herr 《The Onderstepoort journal of veterinary research》1988,55(1):15-17
Circumstantial evidence is presented for the occurrence of a variant of a vaccine strain of B. melitensis Rev 1, designated "FSA" (foreign South African). FSA resembles Rev 1 in its reactions to penicillin and streptomycin but reacts closer to a field strain of B. melitensis as regards dye (thionine and basic fuchsin) sensitivity and colony size. Although colonies of Rev 1 were consistently smaller than other B. melitensis strains, their size was 0,75 mm as opposed to the 1-2 mm reported in the literature, while B. melitensis 16M colonies were 1,25-1,5 mm as opposed to the 3-4 mm previously reported. Rev 1 was found to be urease positive, unless a test of low sensitivity was applied. 相似文献
20.
研制抗羊种布鲁菌脂多糖抗原的单克隆抗体,并应用其建立检测布病的双夹心ELISA方法。本研究采用热酚水法提纯羊种布鲁菌(16M菌株)的脂多糖抗原,并经SDS-PAGE鉴定。用脂多糖和灭活的羊种布鲁菌16M作为免疫抗原,交替免疫6～8周龄BALB/c雌鼠,第1次免疫用羊种布鲁菌标准菌16M全菌加等量弗氏完全佐剂;第2次免疫用脂多糖加等量弗氏不完全佐剂。将脂多糖作为包被抗原建立间接ELISA方法,筛选针对抗羊种布鲁菌(16M菌株)脂多糖的单克隆抗体杂交瘤细胞株。筛选出3株能稳定分泌抗羊种布鲁菌脂多糖单克隆抗体的杂交瘤细胞株,分别命名为5H3、6B8和3H7,细胞培养上清的ELISA效价在1∶1 000～1∶5 000,小鼠腹水单克隆抗体ELISA效价在1∶10 000～1∶160 000;抗体亚类鉴定表明:5H3、6B8属于IgM亚类,3H7属于IgG3亚类;特异性试验结果显示:3株杂交瘤细胞分泌的抗体不与大肠杆菌O157裂解抗原、鸡白痢沙门氏菌裂解抗原、鸭源鸡杆菌脂多糖抗原以及福氏志贺菌裂解抗原反应,仅与灭活的羊种布鲁菌(16M)发生反应。布鲁菌虎红平板凝集试验和试管凝集试验检测结果显示,获得的单抗可与标准检测抗原形成明显的颗粒凝集物和伞状凝集物。利用所建立的单克隆抗体细胞株,建立了一种检测布鲁菌的双夹心间接ELISA方法,并进行了特异性和敏感性检测。对模拟样品和临床样品进行检测,准确性均很高。 相似文献