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1.
哺乳动物的肠道内栖息着庞大复杂的微生物群体,其微生物群体与宿主的消化吸收、物质的营养代谢和免疫功能密切相关,是影响机体健康的重要因素之一。随着分子生物学技术在肠道微生物领域的应用,特别是新一代测序技术的快速发展,使得人们对复杂的肠道微生物的研究更加深入。基于宏基因组学技术不仅能够研究肠道微生物组的多样性、揭示消化道微生物对宿主生理代谢的影响,还能进一步深入挖掘新的功能基因,并揭示宿主基因与微生物组间的互作关系和共同进化。作者综述了宏基因组学技术在哺乳动物肠道微生物中的主要应用和存在的不足,并展望了其在肠道微生物研究中的广阔应用前景,从而加深人们对肠道微生物影响宿主肠道健康作用的认识。  相似文献   

2.
动物肠道中寄生着数以亿计的微生物,参与到动物机体中如代谢和免疫等重要的生理过程中。然而,在粪便等复杂样本中包含着大量微生物,无法通过纯培养技术进行研究,无法评估样本中的微生物多样性。通过宏基因组学技术可以对微生物群总DNA进行分析,使其成为目前研究复杂样本微生物结构和功能的重要工具。并且伴随高通量测序技术和生物信息学的进步,对微生物的分析流程也在不断地被改进。本文比较了在宏基因组学中普遍应用的标志基因扩增子分析和全宏基因组分析,对宏基因组技术在几类野生脊椎动物肠道微生物领域中的应用进行综述,以期使宏基因组技术在野生动物领域研究中拥有更加广泛的应用。  相似文献   

3.
肠道微生物与宿主遗传背景互作关系的研究进展   总被引:1,自引:0,他引:1  
哺乳动物的肠道寄居着大量而且种类繁多的微生物,它们受到宿主基因和环境尤其是食物的影响。近年来,随着宏基因组的出现和测序技术的不断发展,关于人和其他动物的肠道微生物研究日益深入。肠道微生物与人类肥胖和Ⅱ型糖尿病相关性的发现等,进一步加强了科学界对于肠道微生物的关注度。然而,对于肠道微生物与宿主的密切联系以及相互作用机制仍然需要深入研究。本文简要论述了肠道微生物对宿主的功能贡献和宿主的遗传背景对肠道微生物的影响。  相似文献   

4.
鸡肠道中生存着丰富的微生物,这些微生物在宿主的营养代谢与免疫方面有重要作用。高通量测序技术的发展为肠道微生物的研究提供了新的思路,文章简要介绍了宏基因组学,阐述肠道微生物结构变化对宿主的影响及不同饲养条件、宿主生理特征改变对肠道微生的影响,并重点从宏基因组的层面透析鸡肠道微生物菌落结构、营养代谢特征、免疫功能与鸡的健康生长之间的关联性,以期为鸡肠道微生物的研究提供思路。  相似文献   

5.
肠道微生物群的变化与动物机体健康息息相关,肠道微生物群可调控动物机体内能量代谢、异源物质代谢,修复细胞和提高机体免疫机能。宏基因组学技术可用于检测动物肠道微生物群的动态变化。本文主要对宏基因组学研究的生物信息学技术和平台及宏基因组学在动物肠道微生物群中的应用进行综述,为后续开发肠道生态系统动态的全球模型及动物机体的靶向治疗提供理论基础。  相似文献   

6.
宏基因组学揭示瘤胃微生物多样性及功能   总被引:1,自引:0,他引:1  
反刍动物瘤胃内栖息着庞大和复杂的微生物群体,这些微生物与宿主的消化吸收、营养代谢和免疫功能息息相关,宿主及其微生物共同组成了一个"超级生物体"。由于绝大部分瘤胃微生物不可培养,因此以厌氧培养为基础的传统研究方法存在明显的弊端。宏基因组学通过高通量的测序方法,能够全面展示微生物多样性,准确发现新的功能基因。此外,宏基因组学揭示了宿主基因和微生物组之间的互作关系。随着组学技术的不断发展,宏基因组学在瘤胃微生物组研究方面具有广阔的应用前景。  相似文献   

7.
在过去的10~15年,由于新的"组学"技术的发展对微生物群落的遗传和代谢谱进行大规模的分析,人们对肠道菌群组成和功能的认识呈指数增长,从而为揭示肠道菌群的调节及其对机体的影响提供参考。肠道菌群像一个免疫系统与宿主协同工作,促进健康,但有时可能引发疾病。研究对肠道菌群领域现有观点进行总结和梳理,就菌群对宿主健康的潜在影响以及益生菌、益生元和多酚对肠道菌群的调节作用展开综述。  相似文献   

8.
家畜肠道微生物群落之间、微生物与宿主之间不断相互作用,形成动物肠道内复杂的微生物生态环境。肠道微生物及其代谢产物对维持家畜正常生长发育、营养代谢、繁殖性能等方面有着重要作用。微生物-脑-肠轴是中枢神经系统和肠道微生物之间的双向调节渠道。利用代谢组学对微生物代谢物进行检测能对微生物多样性分析数据进行补充,从而进一步揭示肠道微生物与宿主之间相互作用关系。该文综述了家畜肠道微生物代谢物的种类、代谢组学在肠道微生物研究中的应用以及肠道微生物代谢物对家畜动物的影响等内容,有助于了解微生物代谢物与家畜之间的相互作用以及研究的现状。  相似文献   

9.
微生物非培养技术的重大进展以及生物信息学技术的发展,使得人类对牛奶微生物这一复杂的群落有了新的认识,即牛奶微生物群落具有丰富的多样性和多方面的生物学作用,并且可以直观反映奶牛机体的代谢水平并影响新生犊牛的营养代谢与健康。因此,本文总结了奶牛牛奶微生物群的最新研究成果,重点描述了牛奶微生物的内源性途径假说,讨论了其在奶牛乳腺健康与犊牛胃肠道发育中的重要作用,并概述了包含16S基因组学和宏基因组学等在牛奶微生物研究中的应用。  相似文献   

10.
肠道微生物产生的代谢物是影响宿主健康的关键介质。肠道中细菌、真菌、原生动物分解各种膳食营养素而产生的小分子代谢物有益于宿主健康。微生物产生的色氨酸与宿主多种不同生理过程紧密关联,如宿主的生理防御、内稳态、肠道屏障免疫以及炎症性疾病等,但还不清楚这些色氨酸代谢物之间是否存在协同或竞争关系。因此,明确由微生物代谢产生色氨酸的作用机制将有助于进一步解释微生物代谢产物与肠道健康之间的关系。本文主要综述了肠道细菌、真菌、原生动物与色氨酸代谢的特点及其代谢产物在肠道免疫屏障中的作用,色氨酸代谢物作为关键信号分子在不同的肠道炎症疾病中维持肠道稳态的作用,色氨酸代谢物在宿主免疫调节中的作用,旨在探讨肠道微生物的色氨酸代谢物对宿主健康的潜在影响,为今后肠道微生物代谢与哺乳动物健康这一新兴领域的研究提供参考。  相似文献   

11.
The gastrointestinal microbiome is a diverse consortium of bacteria, archaea, fungi, protozoa, and viruses that inhabit the gut of all mammals. Studies in humans and other mammals have implicated the microbiome in a range of physiologic processes that are vital to host health including energy homeostasis, metabolism, gut epithelial health, immunologic activity, and neurobehavioral development. The microbial genome confers metabolic capabilities exceeding those of the host organism alone, making the gut microbiome an active participant in host physiology. Recent advances in DNA sequencing technology and computational biology have revolutionized the field of microbiomics, permitting mechanistic evaluation of the relationships between an animal and its microbial symbionts. Changes in the gastrointestinal microbiome are associated with diseases in humans and animals including inflammatory bowel disease, asthma, obesity, metabolic syndrome, cardiovascular disease, immune‐mediated conditions, and neurodevelopmental conditions such as autism spectrum disorder. While there remains a paucity of data regarding the intestinal microbiome in small animals, recent studies have helped to characterize its role in host animal health and associated disease states. This review is intended to familiarize small animal veterinarians with recent advances in the field of microbiomics and to prime them for a future in which diagnostic tests and therapies will incorporate these developments into clinical practice.  相似文献   

12.
Gut microbiota is generally recognized to play a crucial role in maintaining host health and metabolism. The correlation among gut microbiota, glycolipid metabolism, and metabolic diseases has been well reviewed in humans. However, the interplay between gut microbiota and host metabolism in swine remains incompletely understood. Given the limitation in conducting human experiments and the high similarity between swine and humans in terms of anatomy, physiology, polyphagy, habits, and metabolism and in terms of the composition of gut microbiota, there is a pressing need to summarize the knowledge gained regarding swine gut microbiota, its interplay with host metabolism, and the underlying mechanisms. This review aimed to outline the bidirectional regulation between gut microbiota and nutrient metabolism in swine and to emphasize the action mechanisms underlying the complex microbiome–host crosstalk via the gut microbiota–gut–brain axis. Moreover, it highlights the new advances in knowledge of the diurnal rhythmicity of gut microbiota. A better understanding of these aspects can not only shed light on healthy and efficient pork production but also promote our knowledge on the associations between gut microbiota and the microbiome–host crosstalk mechanism. More importantly, knowledge on microbiota, host health and metabolism facilitates the development of a precise intervention therapy targeting the gut microbiota.  相似文献   

13.
猪肠道细菌培养组学研究进展   总被引:2,自引:0,他引:2  
猪肠道菌群是由所有定殖在猪肠道里的大量细菌、病毒、真菌和古菌等构成的集合。已有研究表明,很多疾病以及猪重要经济性状都与肠道菌群有关。目前,肠道菌群研究使用较多的技术是16S rRNA基因测序和宏基因组测序,但这些技术并不能了解具体菌株的实际功能和生理特性。肠道细菌的分离培养具有特殊重要的意义。近几年来,肠道细菌的培养取得了重要进展,基于培养条件的多样性分离培养出了更多的肠道细菌类别,这对促进肠道菌群在菌株水平的研究以及推广应用有重要意义。本文主要从猪肠道菌群组成结构、培养组学发展、猪肠道细菌培养组学的研究现状等方面进行论述和展望,为后续猪肠道菌群菌株的功能和影响表型的机制研究提供参考借鉴。  相似文献   

14.
Cancer is a substantial global health problem both in humans and animals with a consistent increase in mortality and incidence rate. The commensal microbiota has been involved in the regulation of several physiological and pathological processes, both within the gastrointestinal system and at distant tissue locations. Cancer is not an exception, and different aspects of the microbiome have been described to have anti- or pro-tumour effects. Using new techniques, for example high-throughput DNA sequencing, microbial populations of the human body have been largely described and, in the last years, studies more focused on companions' animals have emerged. In general, the recent investigations of faecal microbial phylogeny and functional capacity of the canine and feline gut have shown similarities with human gut. In this translational study we will review and summarize the relation between the microbiota and cancer, in humans and companion animals, and compare their resemblance in the type of neoplasms already studied in veterinary medicine: multicentric and intestinal lymphoma, colorectal tumours, nasal neoplasia and mast cell tumours. In the context of One Health, microbiota and microbiome integrative studies may contribute to the understanding of the tumourigenesis process, besides offering an opportunity to develop new diagnostics and therapeutic biomarkers both for veterinary and human oncology.  相似文献   

15.
There are abundant microorganisms in the gastrointestinal tract of chicken, which play important roles in the metabolism and immunity of the host. The development of high-throughput sequencing technology for intestinal microbial research provides a new way of thinking. The article elaborates that metagenomics and effects of changes in intestinal microbial structure on the host and different feeding conditions, host physiological characteristics effect on intestinal microbial. This article focuses on the analysis of correlation between the intestinal microbial colony structure and characteristics of nutrient metabolism, immune function, and healthy growth of chicken on the level of metagenomics, and we hope to provide ideas for the study of intestinal microbial.  相似文献   

16.
Information on the gut microbiome composition of different mammals could provide novel insights into the evolution of mammals and succession of microbial communities in different hosts. However, there is limited information on the gut microbiome composition of marine mammals, especially cetaceans because of sampling constraints. In this study, we investigated the diversity and composition of microbial communities in the stomach, midgut, and hindgut of 2 stranded short-finned pilot whales (Globicephala macrorhynchus) and hindgut of a stranded pygmy sperm whale (Kogia breviceps) by using 16S rRNA gene amplicon sequencing technology. On the basis of the 50 most abundant operational taxonomic units, principal coordinate analysis, and non-metric multidimensional scaling analysis, we confirmed that the gut microbial communities of the 3 whales were different. Our results revealed that the gut microbiome of 1 stranded short-finned pilot whale GM16 was dominated by Firmicutes (mainly Clostridium) and Fusobacteria; whereas that of the other pilot whale GM19 was composed of Gammaproteobacteria and Bacteroidetes (mainly Vibrio and Bacteroides, respectively), probably caused by intestinal disease and antibiotic treatment. The gut microbiome of the pygmy sperm whale was dominated by Firmicutes and Bacteroidetes. Moreover, different gastrointestinal tract regions harbored different microbial community structures. To our knowledge, this is the first report of the gut microbiome of short-finned pilot whales, and our findings will expand our current knowledge on microbial diversity and composition in the gastrointestinal tract of cetaceans.  相似文献   

17.
温度是一个重要的非生物环境变量,能够驱动动物谱系的适应轨迹和动物群落的组成。环境温度作为影响动物肠道微生物菌群变化的众多因素之一,能够影响肠道微生物菌群的组成及丰度,进而调控宿主生长、发育、繁殖、免疫等生物学过程及功能。动物肠道核心菌群的组成及其代谢产物在不同温度下存在显著差异,在单胃动物、反刍动物等中都有相应的报道。极端温度主要通过诱导肠道微生物菌群产生结构和功能上的差异,进而对宿主表型产生影响。目前,对于温度如何影响动物肠道菌群的了解仍非常有限。本文针对不同环境温度条件下,肠道微生物菌群结构和功能的差异及相关研究进行了总结及综述。探讨由环境温度引起的肠道微生物菌群与宿主适应机制之间的关系,包括对宿主产热机制、消化系统和免疫系统等其他方面的影响并开展研究,将为肠道微生物对宿主健康的调节提供参考和思路。  相似文献   

18.
肠道微生物被称为动物的“隐藏免疫器官”,不仅能参与宿主代谢还能影响宿主的免疫系统,对维持机体健康至关重要。作者主要介绍了培养组学的发展历程及其对动物肠道微生物研究的重要意义、传统微生物培养方法和分子生物学方法在研究微生物时各自的优、缺点。培养组学是基于传统微生物培养方法同时采用多种培养条件进行微生物培养,再辅以基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)和16S rRNA基因测序技术建立的一种新型微生物分离、鉴定方法,该方法将传统微生物培养技术与分子生物学技术的优点融为一体。该方法在挖掘“新微生物”的研究中,具有发现、找到并获得的优势;在微生物的研究中可定制分离目标菌株进行验证,并能通过丰富注释清楚地了解肠道微生物组。此外,分析了培养组学分别在家禽肠道、猪肠道、反刍动物肠道等动物肠道的研究应用现状,提出了环境条件对肠道微生物的影响,如人类接触对肠道菌群的影响、同物种不同性别肠道菌群的差异,以期为培养组学在动物肠道微生物的研究运用中提供参考。  相似文献   

19.
The gut microbiota is comprised of a diverse array of microorganisms that interact with immune system and exert crucial roles for the health. Changes in the gut microbiota composition and functionality are associated with multiple diseases. As such, mobilizing a rapid and appropriate antimicrobial response depending on the nature of each stimulus is crucial for maintaining the balance between homeostasis and inflammation in the gut. Major players in this scenario are antimicrobial peptides (AMP), which belong to an ancient defense system found in all organisms and participate in a preservative co-evolution with a complex microbiome. Particularly increasing interactions between AMP and microbiota have been found in the gut. Here, we focus on the mechanisms by which AMP help to maintain a balanced microbiota and advancing our understanding of the circumstances of such balanced interactions between gut microbiota and host AMP. This review aims to provide a comprehensive overview on the interplay of diverse antimicrobial responses with enteric pathogens and the gut microbiota, which should have therapeutic implications for different intestinal disorders.  相似文献   

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