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为探讨小反刍兽疫病毒（peste des petits ruminants virus,PPRV）贵州流行株N基因分子特征和分群,试验设计了1对特异性引物,应用RT-PCR技术对小反刍兽疫（peste des petits ruminants,PPR）临床样本进行N基因扩增,克隆至pMD19-T载体,对阳性重组质粒进行测序,应用DANStar软件对测序序列和参考序列进行核苷酸同源性、氨基酸同源性、变异位点及系统进化树分析。结果显示：PPRV贵州流行株N基因扩增长度为1 578 bp,其相互间核苷酸、氨基酸同源性分别为99.6%~100.0%及99.2%~100.0%,与国内参考株N基因的核苷酸序列（97.7%~99.9%）及氨基酸序列（98.3%~100.0%）同源性较国外参考株（88.5%~97.7%和92.2%~98.5%）高;PPRV贵州流行株N基因编码的氨基酸同疫苗株Nigeria 75-1相比存在26个位点突变,但没有氨基酸的缺失或增加;基于N基因系统进化分析显示,PPRV贵州流行株同国内参考株处于同一个进化分支,但与国外参考株处于不同进化分支;其属于病毒进化的Ⅳ基因群,与国内参考株处于同一系统分群,但与疫苗株Nigeria 75-1（Ⅰ基因群）处于不同基因群。 相似文献
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Orf virus (ORFV), the type species of Parapoxvirus, is responsible for contagious ecthyma in sheep and goats. In the present report, sequence analysis of major envelope gene (B2L) of four Indian orf virus isolates originating two each from sheep and goats was carried out. These recent isolates belonged to different outbreaks that occurred in Kumaon hills and adjoining plains during 2004-2005. Preliminary screening of the scab samples was carried out by diagnostic PCR. Full-length B2L gene encoding for immunogenic major envelope protein from all the four ORFV isolates was amplified by PCR and the amplicons (1206 bp) were cloned and sequenced. Comparative sequence analysis revealed an open reading frame of 1137 nucleotides (nt) encoding a polypeptide of 378 amino acids (aa). Indian isolates were highly related amongst themselves with sequence identity of over 97% at the nt and aa level. Further, they showed 97-98% sequence identity with sequences of other ORFV isolates from around the world; while 94-95 and 82.7-83.8% sequence identity was observed, respectively, with pseudocowpox and bovine papular stomatitis viruses--the other members of the genus. Phylogenetic analysis also showed that these Parapoxviruses from sheep and goats are closely related to other orf viruses reported worldwide. 相似文献
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2013年12月新疆伊犁州霍城县发生不明山羊疫情,根据临床症状和剖检变化怀疑为小反刍兽疫感染。对3只病死山羊病料、8只患病山羊分泌物棉拭子样品和6只患病山羊血清样品分别进行病原学和血清学检测。利用竞争ELISA试剂盒对6份血清样本进行抗体检测,结果全部为阳性。利用抗原捕获ELISA试剂盒,在11只病羊样品中都检测到小反刍兽疫抗原。利用能特异性检测小反刍兽疫病毒的荧光定量RT-PCR方法,在11只病羊样品中检测到小反刍兽疫病毒核酸。利用特异引物进行PPRV N基因片段RT-PCR反应,从11只病羊样品中检测到PPRV核酸。针对2号样本病原核酸N基因和F基因片段进行序列同源性比较,结果该毒株与西藏流行株序列片段相似性分别为96.5%和97.5%。遗传进化分析,该病原属于谱系4,与巴基斯坦等国流行毒株遗传关系最近。 相似文献
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为了调查小反刍兽疫病毒四川简阳株(SCJY株)的分子遗传特征,我们对四川简阳发病羊鼻拭子中的小反刍兽疫病毒N基因进行了遗传进化分析。通过RT-PCR、克隆测序获得SCJY株N基因序列,使用DNASTAR软件将其与GenBank中的15条参考株序列进行同源性比对,使用MEGA6软件进行系统进化分析。结果显示:SCJY株N基因序列全长1578nt,与参考株的核苷酸同源性为88.9%～100%,氨基酸同源性为92.8%～100%,与2013～2014年小反刍兽疫中国流行毒株高度同源;系统进化分析将16个毒株N基因划分为4个谱系,SCJY株属于Ⅳ系。 相似文献
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【目的】对山羊干扰素刺激基因15(interferon-stimulated gene 15,ISG15)的CDS区进行克隆、表达和生物信息学分析,并探讨小反刍兽疫病毒(Peste des petits ruminants virus,PPRV)感染山羊子宫内膜上皮细胞(caprine endometrial epithelial cells,EEC)对ISG15的影响。【方法】根据GenBank中公布的山羊ISG15基因预测序列(登录号:XM_005690795)设计特异性引物,利用RT-PCR方法扩增山羊ISG15基因CDS区,连接至真核表达载体进行测序并表达,对不同物种ISG15核苷酸及氨基酸序列进行比对,并构建系统进化树,利用生物信息学方法对ISG15蛋白理化性质、跨膜结构、修饰位点、二级结构、三级结构、亚细胞定位等进行分析。通过构建真核表达载体转染及PPRV感染EEC细胞,利用间接免疫荧光的方法观察其外源性和内源性亚细胞定位,并探究PPRV感染对EEC细胞的影响。【结果】成功克隆出山羊ISG15基因CDS区并进行了真核表达。山羊ISG15核苷酸和氨基酸相似性及进化树分析都与盘羊和绵羊亲缘关系最近。生物信息学分析结果显示,山羊ISG15基因位于16号染色体上,全长474 bp,编码157个氨基酸,分子质量约为17.47 ku,为亲水性蛋白,无跨膜区和信号肽,有1个潜在的N-糖基化位点,16个潜在的O-糖基化位点和10个潜在的磷酸化位点。二级结构与三级结构预测显示,山羊ISG15蛋白由无规则卷曲、延伸链、α-螺旋和β-转角组成,比例分别为34.39%、31.21%、21.66%和12.74%。可以与干扰素和泛素化相关的蛋白相互作用,并参与机体的抗感染作用。亚细胞定位显示,外源性和内源性ISG15均定位于细胞质中。【结论】试验成功克隆出山羊ISG15基因CDS区序列,亚细胞定位发现内源性和外源性ISG15均定位于EEC细胞的细胞质中。结果为后续ISG15基因细胞内功能研究奠定基础。 相似文献
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Two hundred and ninety-three isolates of Staphylococcus aureus obtained from 127 bulk-tank milk samples of goats and sheep from Switzerland were characterised by pheno- and genotypic traits. Of the 293 S. aureus isolates, 193 (65.9%) were egg yolk-negative and 15 (5.1%) were negative for clumping factor and/or protein A determined by a latex agglutinating test system. For 285 isolates, PCR amplification of the 3' end of the coagulase gene showed a single amplicon. Five differently sized PCR products of 500, 580, 660, 740 and 820 bp were distinguished. In 191 isolates (n = 293) staphylococcal enterotoxin (SE) genes were detected: 123 isolates tested positive for SEC gene, 31 for SEG gene, 28 for SEA gene, 26 for SEJ gene, 24 for SEI gene, 4 for SEB gene and 4 for SED gene. Furthermore, 126 isolates were positive for the gene encoding the toxic shock syndrome toxin 1. Coagulase gene restriction profile analysis of the 145 isolates harbouring SEA or SEC genes revealed six different patterns using AluI and five different patterns using HaeIII. In summary, within these two groups, high genotypic uniformity within the different sized coagulase gene amplicons was demonstrated. This is the first study providing comprehensive characterisation data of S. aureus strains originating from bulk-tank milk samples of goats and sheep. Remarkable differences in phenotypic traits between S. aureus originating from goats and sheep and bovine milk were found. Moreover, the high prevalence of toxin-producing S. aureus may be important as it is relevant to food hygiene. 相似文献
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Candice Schmidt Juliana F. Cargnelutti Mário C.S. Brum Carolina K. Traesel Rudi Weiblen Eduardo F. Flores 《Veterinary microbiology》2013
We herein describe the partial nucleotide sequencing and phylogenetic analysis of the B2L gene of seventeen Brazilian orf viruses (ORFV). Seventeen viruses were recovered from outbreaks of contagious ecthyma in sheep and goats in four states in Southern and Northeast country, and three from commercial vaccines. Most analyzed viruses were associated with outbreaks of classical contagious ecthyma, with lip, nostrils and labial commissure involvement, yet udder/teat, feet, vulvar and disseminated lesions were also reported in some cases. Nucleotide sequence analysis revealed a high degree of B2L similarity among sheep sequences (>99%) regardless the geographic origin, and a remarkable high identity for the two goat isolates (>99.8%), with similarity dropping to below 99% when comparing viruses from the two species. A phylogenetic tree grouped most sheep and goat viruses on different branches. In addition, sequence alignment allowed the identification of up to six scattered nucleotide changes that were predominant and more consistent in goat isolates, including a number of sequences from other continents. Thus, in spite of the high nucleotide similarity, different degrees of similarity and discrete nucleotide changes in the B2L gene may help in grouping ORFV viruses according to host species. 相似文献
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Emmanuel Senyael Swai A. Kapaga F. Kivaria D. Tinuga G. Joshua P. Sanka 《Veterinary research communications》2009,33(8):927-936
Despite the widespread prevalence of infection with Peste des petits ruminants virus (PPRV) in goats and sheep industry in
Asia and sub-Saharan Africa, there have been few, if any, structured population-based studies examining the epidemiology of
this infection in Tanzania. In this study, we investigated the seroprevalence, and risk factors, of Peste des petitis ruminants(PPR)
in sheep and goat flocks from seven different geographical administration authorities (Ngorongoro, Monduli, Longido, Karatu,
Mbulu, Siha and Simanjiro) located in Northern Tanzania. Serum samples from 657 and 892 sheep and goats, respectively, corresponding
to 91 sheep/goat flocks and 43 villages were collected. Competitive enzyme linked immunosorbent assay (c-ELISA) was used to
detect the presence of antibodies in the serum against PPRV. Chi-square analysis and multivariable logistic regression model
were used to identify risk factors for PPRV seropositivity. Findings suggested that the sero-positive cases were significantly
higher in goats than in sheep (49.5% versus 39.8%; P = 0.002). The overall seroprevalence of PPRV infection in small ruminants
was 45.8%. Highest seroprevalence (42.6–88.02%) was observed in Mbulu, Siha, Longido, Ngorongoro districts, while antibodies
less than 40% to none were found in serum from Monduli, Karatu and Simanjiro, respectively. These findings confirm natural
transmission of PPRV under field condition for the first time in Tanzania. Results may be correlated with variations in the
sheep and goat husbandry practices within different geographic localities, the uncontrolled movement of animals, the levels
of natural immunity and the sharing of grazing field amongst agro and pastoralists. 相似文献
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小反刍兽疫病毒N、H和F蛋白的真核表达 总被引：1，自引：0，他引：1
目的构建小反刍兽疫病毒(PPRV)H、N、F、NF重组真核表达质粒并观察其在真核细胞内的表达情况。方法采用逆转录聚合酶链式反应(RT-PCR)技术,从病羊组织中扩增PPRV的N、H、F基因序列并克隆到真核表达载体pIRES1neo中,最后用PCR、酶切和序列分析对重组质粒进行鉴定;将重组质粒以磷酸钙介导法转染Vero细胞,用免疫荧光方法鉴定其在细胞中的表达。结果将RT-PCR产物电泳,得到与预期大小相符的特异性片段;重组质粒经pIRES1-N、pIRES1-H、pIRES1-F和pIRES1NF酶切后,均出现预期相符的片段;DNA测序表明插入片段的序列与小反刍兽疫病毒N、H、F蛋白基因序列完全一致,其大小分别为1575bp、1830bp和1641bp;将重组质粒感染真核细胞,经免疫荧光检测,证明所有蛋白均得到表达。结论成功构建了重组真核表达质粒pIRES1-N、pIRES1-H、pIRES1-F和pIRES1NF,为继续进行基因免疫研究奠定了基础。 相似文献
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Evaluation of the virulence of some strains of peste-des-petits-ruminants virus (PPRV) in experimentally infected West African dwarf goats 总被引：4，自引：0，他引：4
Couacy-Hymann E Bodjo C Danho T Libeau G Diallo A 《Veterinary journal (London, England : 1997)》2007,173(1):178-183
Different isolates of peste-des-petits-ruminants virus (PPRV) from outbreaks in Africa and India were investigated for virulence in West African dwarf goats in the Ivory Coast. Six groups of five animals received a virulent suspension of various strains of virus at a concentration of 103 TCID50/mL and the goats were observed for 15 days after infection. The Côte-d’Ivoire 89 (CI89), Guinea Conakry and Bissau Guinea PPRV strains caused a peracute disease; the India-Calcutta strain caused acute disease; the Sudan-Sennar strain produced an acute to mild disease, while the Nigeria 75/1 wild-type strain caused a mild disease and the animals recovered. The viruses studied contained examples of PPRV from specific lineage groups based on their nucleoprotein PPRV gene. This experiment indicated that virulence characteristics might be a useful marker to help classify PPRV isolates. 相似文献
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小反刍兽疫病毒RT-LAMP检测方法的建立 总被引：1，自引：0，他引：1
利用逆转录环介导等温核酸扩增技术(RT-LAMP)建立了小反刍兽疫病毒快速检测方法,同时评价了该方法的灵敏性和特异性。结果表明,根据小反刍兽疫病毒N基因保守区域设计的LAMP引物能够在63℃恒温下,1小时内实现目的核酸的大量扩增,由于在检测前加入荧光指示试剂,检测结果可以直接用肉眼判断,避免了由于开盖检验带来的扩增产物污染导致的假阳性。该检测体系具有较高的特异性,只能特异性地检测目的病毒,与其他同属的病毒或类似病毒等无交叉反应;具有较高的检测灵敏度,比普通RT-PCR灵敏性高10倍,与荧光RT-PCR的灵敏度相当。 相似文献
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Hammouchi M Loutfi C Sebbar G Touil N Chaffai N Batten C Harif B Oura C El Harrak M 《Veterinary microbiology》2012,160(1-2):240-244
Peste des petits ruminants virus (PPRV) recently caused a serious outbreak of disease in Moroccan sheep and goats. Alpine goats were highly susceptible to PPRV with mortality rates approaching 100%, as opposed to local breeds of sheep which were less susceptible to the disease. The relative susceptibility of alpine goats was investigated through an experimental infection study with the Moroccan strain of PPRV. Severe clinical signs were observed in the alpine goats with virus being excreted through ocular, nasal and oral routes. No difference in the severity of the disease in goats was observed with different inoculation routes and transmission of the virus by direct contact was confirmed. This study confirmed the susceptibility of the alpine goat to PPRV infection and describes a challenge protocol that effectively and consistently reproduced severe clinical signs of PPR in experimentally infected goats. 相似文献
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从规模化养殖场鸭群气管和泄殖腔试子分离到新城疫病毒(NDV)27株,用2株针对NDV HN单抗进行抗原表位分析,并选择4个分离株进行F基因高变区(374bp)和HN基因全长序列分析。抗原表位分析结果显示,27个鸭分离株均能与其中一株单抗C3-B7反应,而与另外一株单抗1E5反应为阴性。F基因(374bp)序列分析结果显示,4个鸭分离株均属于NDV ClassⅠ分支,分离株之间核苷酸同源性为99.2%～100%;分离株与NDV ClassⅡ毒株遗传距离为0.9%～9.9%,与NDV ClassⅠ毒株遗传距离为38.5%～41.7%。根据核苷酸序列推导的氨基酸序列表明,4个鸭NDV分离株F蛋白裂解位点氨基酸模式为:112-EROERL-117。HN基因序列分析结果显示,4个鸭NDV分离株HN基因全长1851bp,编码585个氨基酸;同源性比较发现4个鸭NDV分离株之间核苷酸同源性为99.7%～99.8%,与NDV ClassⅡ毒株核苷酸同源性为68.4%～70.5%,与NDV ClassⅠ毒株核苷酸同源性为95.8%～98.0%。本研究结果显示,鸭分离毒均属于NDV ClassⅠ弱毒,在抗原表位和基因序列上与广泛应用的NDV弱毒疫苗株(LaSota)不同,这些毒株的来源有待进一步深入研究。 相似文献
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Dissemination of small ruminant lentivirus (SRLV) infections in Norway is affected by the different control strategies used for maedi-visna virus (MVV) infections in sheep and caprine arthritis-encephalitis virus (CAEV) infections in goats. Here we investigated SRLV phylogenetic group variants in sheep. CAEV-like isolates, belonging to phylogenetic group C, were found among both seropositive sheep and goats in mixed flocks, in which sheep and goats are kept together. Intra-herd clustering confirmed that mixed flock animals were infected by the same virus variant, suggesting ongoing interspecies transmission. Few sheep flocks were found to be infected with the MVV-like phylogenetic group A. The apparent absence of SRLV group A type in goats is probably due to the MVV control programme and animal management practices. SRLV group C targets lungs and mammary glands in sheep, and induces typical SRLV pathological lesions. SRLV group C isolated from the sheep mammary glands suggested a productive infection and potential for transmission to offspring. SRLV group C was most prevalent among goats. A lower PCR sensitivity in seropositive sheep suggested a lower load of SRLV group C provirus in sheep than in goats. Higher genetic divergence of group C than in other SRLV groups and extensive heterogeneity among group C isolates in the matrix C-terminal region demonstrate the need for identifying conserved target regions when developing PCR protocols for SRLV detection. As sheep and goats may serve as reservoirs for all SRLV genogroup types, successful control programmes require inclusion of both species. 相似文献
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Dey S Singh VP Kumar AA Sharma B Srivastava SK Singh N 《Research in veterinary science》2007,83(1):1-4
The phylogenetic relationships of five isolates of Pasteurella multocida serotype B:2 belonging to buffalo, cattle, pig, sheep and goat were investigated by comparative sequence analysis of 16S rRNA gene. The 1468bp fragment of 16S rRNA gene sequence comparison showed that the isolates of cattle (PM75), pig (PM49) and sheep (PM82) shared 99.9% homology with the buffalo isolate (vaccine strain P52) whereas, the goat isolate (PM86) shared 99.8% homology with the vaccine strain. The 16S rRNA gene sequences of these isolates were also found monophyletic with type B reference strain NCTC 10323 of P. multocida subsp. multocida. The present study indicated the close relationships of haemorrhagic septicaemia causing P. multocida serotype B:2 isolates of buffalo and cattle with other uncommon hosts (pig, sheep and goat). 相似文献
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Singh BB Sharma JK Ghatak S Sharma R Bal MS Tuli A Gill JP 《Veterinary parasitology》2012,186(3-4):503-506
Echinococcosis is an important medical, veterinary and economic concern in India. Ten cysts were randomly selected from each intermediate host species (cattle, buffalo, sheep, goat and pigs). Either the germinal layer (sterile cysts) or protoscoleces (fertile cysts) were collected for molecular characterization. A 434 base pair fragment of the mitochondrial cytochrome oxidase-1 gene was amplified using PCR from each isolate. Ten representative samples (2 from each intermediate host species) were sequenced in both the directions from which readable sequences were obtained from nine for phylogenetic analysis (NCBI, Blast). Phylogenetic analysis of cytochrome oxidase I gene revealed that seven (77.7%) isolates, from cattle (2), pigs (2), buffaloes (1) and goat (2) were clustered with the Indian Buffalo (G3) strain of Echinococcus granulosus, while two (22.2%) isolates from sheep were clustered with the sheep strain (G1) of E. granulosus. Phylogenetic analysis of the cytochrome oxidase-1 gene revealed that the buffalo strain (G3) and common sheep strain (G1) are cycling among livestock in north India and that these strains are highly adapted to cattle, buffalo, sheep, goats and pigs. 相似文献