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1.
A mapping population of 96 BC1F9lines (Backcross Inbred Lines: BILs),derived by a single-seed descent method rom a backcross of Nipponbare (japonica) / Kasalath (indica // Nippon are, was used to detect quantitative trait loci (QTLs) for leaf bronzing index (LBI), stem dry weight (SDW), tiller number (TN) and root dry weight (RDW) under Fe2+ stress condition in rice. Two parents and 96 BILs were phenotyped for the traits by growing them in Fe2+ toxicity nutrient solution. A total of four QTLs were detected on chromosome 1 and 3, respectively, with LOD of QTLs ranging from 3.17 to 7.03. One QTL controlling LBI, DW, N and RDW was located at the region of C955-C885 on chromosome 1, and their contributions to whole variation were 20.5%, 36.9%, 43.9% and 38.8%,respectively. The QTL located at the region of C955-C885 on chromosome 1 may be important to ferrous iron toxicity tolerance in rice. Another QTL for SDW and RDW was located at the region of C25-C515 on chromosome 3, with respective contributions of 47.9% and 35.0% to whole variation. Further, two QTLs on chromosome 1 were located for RDW at the region of R2329-R210 and for TN at the region of R1928-C178. Comparing with the other mapping results, the QTL located at the region of C955-C885 on chromosome 1 was identical with the results reported previously. There is a linkage between a TL detected under Fe2+ stress condition for stem and root dry weight and a QTL detected under phosphorus-deficiency condition for dry weight on chromosome 3. This revised version was published online in July 2006 with corrections to the Cover Date.  相似文献   

2.
水稻苗期耐Cd胁迫的QTL定位分析   总被引:2,自引:0,他引:2  
[目的]进行水稻苗期耐Cd胁迫的QTL初步定位。[方法](1)以Lemont(美国)和Dular(印度)杂交建立的重组自交系(RILs)群体,包括123个家系和亲本在内,用含有0.2mg/L镉的水培液进行处理,以不加镉培养的水培液作为对照,考察了叶绿素含量、根长、株高、叶长等4个性状,并转换成抗性指数,用于评价水稻对Cd污染的抗性指标。(2)在已构建的以109个引物为基础的遗传图谱上进行复合区间定位。[结果](1)共检测到9个加性QTLs,涉及1,2,3,11等4条染色体,其中,以叶绿素抗性指数为指标,检测到3个与耐Cd有关的QTLs 分别位于第2,3,11染色体上,解释了14%,9%,9%的表型变异;(2)以根长抗性指数为评价指标,只定到1个位于第1染色体上控制耐Cd的QTLs,解释了9%的表型变异; (3)用株高抗性指数进行定位,共有3个与耐Cd相关的QTLs,位于1,1,11染色体上,分别解释了10%,27%,10%的表型变异;(4)而以叶长抗性指数进行水稻秧苗耐Cd性表现的QTL定位,结果发现也有2个QTLs与其耐Cd 反应有关,它们分别位于1,11染色体上,解释了21%,12%的表型变异。分析表明,在采用不同评价指标所检测到的9个与耐Cd相关的QTLs中,有7个集中于第1和第11染色体上,其中第1染色体上有4个,第11染色体上有3个。(结论)以株高和叶绿素抗性指数为评价指标,检测到的QTLs最多,根长抗性指数为评价指标的最少。研究还发现在第1和第11染色体上的相同区间内同时检测到以不同抗性指数为评价指标的多个与耐Cd相关的QTLs,推测它们可能是功能相同的几个紧密连锁的非等位基因,也可能就是同一等位基因的不同表现形式,从而也说明了该评价指标用于基因定位的准确性和可行性。  相似文献   

3.
Nitrogen (N) deficiency is a major yield‐limiting factor in rice production. The objective of this study was to identify putative QTLs for low‐N stress tolerance of rice, using an advanced backcross population derived from crosses between an indica cultivar ‘93‐11’ and a japonica cultivar ‘Nipponbare’ and genotyped at 250 marker loci. Plant height, maximum root length, root dry weight, shoot dry weight and plant dry weight under two N conditions and their relative traits were used to evaluate low‐N tolerance at the seedling stage. A total of 44 QTLs were identified on chromosomes 1, 2, 3, 4, 5, 6, 8 and 9. Eight intervals on five chromosomes were identified to harbour multiple QTLs, suggesting pleiotropism or multigenic effects according to the contributor of alleles. Some QTL clusters were found in the nearby regions of genes associated with N recycling in rice, indicating that the key N metabolism genes might have effects on the expression of QTLs. Several unique QTLs for relative traits were detected, which suggested the specific genetic basis of relative performance.  相似文献   

4.
大豆苗期耐低磷性及其QTL定位   总被引:2,自引:0,他引:2  
利用来自波高和南农94-156(耐低磷种质)的重组自交系群体NJ(SP)BN(151个家系)通过盆栽试验研究与耐低磷有关的性状,并进行耐低磷性状的QTL定位。初步结果表明,不施磷处理的总干重主要由单株P吸收量决定,而与磷利用效率无关;而单株P吸收量与根干重、根效率均极显著正相关,单株P吸收量变异的76.2%由根效率决定。不施磷处理的根冠比(R/S)显著增加主要是茎干重无显著变化而根干重显著增加所致。在D1b+W、F、G、N和O等5个连锁群上共检测到7个QTL与耐低磷有关。分别可解释所对应性状表型变异的4.8%~17.0%,其中5个QTL的增效基因来自亲本波高,2个QTL的增效基因来自亲本南农94-156。  相似文献   

5.
Phosphorus (P) deficiency is a major abiotic stress that limits plant growth and crop productivity throughout the world. In the present study, 184 recombinant inbred line (RIL) families developed from soybean varieties Kefeng No. 1 and Nanong 1138-2 were used to identify quantitative trait loci (QTL) associated with P deficiency tolerance. Seven traits of plant height (HT), weight of fresh shoot (FSW), weight of fresh root (FRW), weight of dry root (DRW), length of main root (RL), phosphorus content in leaf (LP), phosphorus content in root (RP), were used as parameters to assess the phosphorus deficiency tolerance. The QTL mapping for the seven traits was performed using the program WinQTLCart. Seven QTLs were detected and mapped on two linkage groups for three traits of weight of fresh shoot, phosphorus contents in leaf and in root. The QTLs that had LOD scores more than three were detected for all of the three traits above. Most of the QTLs explained more than 10% of the total variation. The two QTLs for phosphorus content in leaf explained more than 20% of the total variation, respectively. Five QTLs were mapped on linkage group F2, and two on linkage F1. It was suggested that the genes related to phosphorus deficiency tolerance located on linkage group F in soybean.Contributed equally to this work.  相似文献   

6.
Summary Quantitative trait loci (QTL) analysis for Al tolerance was performed in rice using a mapping population of 98 BC1F10 lines (backcross inbred lines: BILs), derived from a cross of Al-tolerant cultivar of rice (Oryza sativa L. cv. Nipponbare) and Al-sensitive cultivar (cv. Kasalath). Three characters related to Al tolerance, including root elongation under non-stress conditions (CRE), root elongation under Al stress (SRE) and the relative root elongation (RRE) under Al stress versus non-stress conditions, were evaluated for the BILs and the parents at seedling stage. A total of seven QTLs for the three traits were identified. Among them, three putative QTLs for CRE (qCRE-6, qCRE-8 and qCRE-9) were mapped on chromosomes 6, 8 and 9, respectively. One QTL for SRE (qSRE-4) was identified on chromosome 4. Three QTLs (qRRE-5, qRRE-9 and qRRE-10) for RRE were detected on chromosomes 5, 9, 10 and accounted for 9.7–11.8% of total phenotypic variation. Interestingly, the QTL qRRE-5 appears to be syntenic with the genomic region carrying a major Al tolerance gene on chromosome 6 of maize. Another QTL, qRRE-9, appears to be similar among different rice populations, while qRRE-10 is unique in the BIL population. The common QTLs for CRE and RRE indicate that candidate genes conferring Al tolerance in the rice chromosome 9 may be associated with root growth rates. The existence of QTLs for Al tolerance was confirmed in substitution lines for corresponding chromosomal segments. These results also provide the possibilities of enhancing Al tolerance in rice through using marker-assisted selection (MAS) and pyramiding QTLs.  相似文献   

7.
Drought is a major abiotic constraint for rice production worldwide. The quantitative trait loci (QTLs) for drought tolerance traits identified in earlier studies have large confidence intervals due to low density linkage maps. Further, these studies largely focused on the above ground traits. Therefore, this study aims to identify QTLs for root and shoot traits at the vegetative growth stage using a genotyping by sequencing (GBS) based saturated SNP linkage map. A recombinant inbred line (RIL) population from a cross between Cocodrie and N-22 was evaluated for eight morphological traits under drought stress. Drought was imposed to plants grown in 75 cm long plastic pots at the vegetative growth stage. Using a saturated SNP linkage map, 14 additive QTLs were identified for root length, shoot length, fresh root mass, fresh shoot mass, number of tillers, dry root mass, dry shoot mass, and root-shoot ratio. Majority of the drought responsive QTLs were located on chromosome 1. The expression of QTLs varied under stress and irrigated condition. Shoot length QTLs qSL1.38 and qSL1.11 were congruent to dry shoot mass QTL qDSM1.38 and dry root mass QTL qDRM1.11, respectively. Analysis of genes present within QTL confidence intervals revealed many potential candidate genes such as laccase, Calvin cycle protein, serine threonine protein kinase, heat shock protein, and WRKY protein. Another important gene, Brevis radix, present in the root length QTL region, was known to modulate root growth through cell proliferation and elongation. The candidate genes and the QTL information will be helpful for marker-assisted pyramiding to improve drought tolerance in rice.  相似文献   

8.
铁和锌是水稻生长必需的微量元素,也是重金属污染元素。在低洼或酸性土壤中,水稻容易遭受亚铁和锌毒害,抑制水稻生长,造成生物量和产量下降。为探讨水稻苗期耐亚铁毒、锌毒的遗传机制,利用优质粳稻品种Lemont和高产籼稻品种特青为亲本构建的高代双向回交导入系和308个在染色体上均匀分布的SNP标记剖析耐亚铁毒、锌毒相关的QTL。从双向导入系共检测到42个影响耐亚铁毒、锌毒相关性状如苗高、苗干重、根干重以及胁迫与对照相对值的QTL,多数位点增强亚铁毒、锌毒抗性的有利等位基因来自Lemont。其中同时在2个背景下表达的QTL有4个,占定位QTL总数的9.52%,说明大多数QTL的表达具有明显的遗传背景效应。同一遗传背景下同时影响耐亚铁毒和锌毒的QTL有9个,其中QSdw5在2个背景中均被检测到,其效应大小和方向一致,说明水稻苗期耐亚铁毒、锌毒之间存在遗传重叠位点。因此,通过分子标记辅助选择从Lemont中导入或聚合有利的遗传重叠区域,可以提高特青对亚铁毒、锌毒的抗性水平。  相似文献   

9.
水稻芽期与幼苗前期耐碱性状QTL定位   总被引:9,自引:0,他引:9  
利用包含120个株系的籼粳交来源(春江06/TN1)的加倍单倍体群体, 在Na2CO3胁迫下, 以发芽期和幼苗前期的相对发芽势等10个性状作为耐碱性评价指标, 进行水稻耐碱性的QTL定位。相关性分析表明, 相对发芽势和相对发芽率显著正相关, 相对苗高、相对根数和相对根长之间显著正相关。采用QTLNetwork统计软件共定位到14个加性QTL和13个上位性QTL。在第3染色体RM251~RM3280间有2个QTL, 在第7染色体RM3286~RM1279区域有3个QTL; 在第1、2和7染色体同一位置同时检测到2个上位性QTL, 在第12染色体RM1246~RM5199之间集中了4个上位性QTL, 耐碱数量基因表现出一因多效或紧密连锁现象。耐碱性盐QTL可能包括两类, 一类与K+、Na+等离子胁迫有关, 另一类与高pH胁迫有关。不同类型的水稻品种都具有一些耐碱基因, 可以通过有性杂交和分子标记辅助选择的方法选育优良的耐碱品种。  相似文献   

10.
利用“永久F2”群体进行小麦幼苗根系性状QTL分析   总被引:5,自引:1,他引:4  
为了研究小麦苗期根系性状的遗传,以小麦品种花培3号和豫麦57的杂交DH群体组配了一套含168个杂交组合的“永久F2”群体。利用WinRHIZO根系分析系统测定四叶一心期小麦水培幼苗根系总长度、直径、表面积、体积、根尖数、最大根长、茎叶干重、根干重及根茎干重比9个性状。采用复合区间作图法分析幼苗根系8个性状的QTL,定位了7个加性效应QTL和12对上位性互作QTL,包括加性效应、显性效应,加加互作、加显互作和显显互作,分布在1A、1D、2A、2B、2D、3A、3B、5D、6D和7D染色体上,单个QTL可解释0.01%~11.91%的遗传变异。在染色体2D上XWMC41至XBARC349.2区间检测到同时控制总根长和根干重的一个QTL。上位性对苗期根系生长发育有重要作用。试验结果表明,苗期根系性状的遗传机制较复杂, 因此在育种中要综合考虑根系各性状之间的关系,保证根系协调统一、发达健壮。  相似文献   

11.
Y. Xu  S. Li  L. Li  X. Zhang  H. Xu  D. An 《Plant Breeding》2013,132(3):276-283
Quantitative trait loci (QTLs) for salt tolerance with additive, epistatic and QTL × treatment interaction effects at seedling stage in wheat were identified. A set of 131 recombinant inbred lines derived from cross Chuan 35050 × Shannong 483 were evaluated under salt stress and normal conditions. Wide variation was found for all studied traits. A total of 18 additive and 16 epistatic QTLs were detected, among which five and 11 were with significant QTL × treatment effects. Ten QTL clusters were identified, and each may represent a single gene or closely linked genes. The locus controlling shoot K+/Na+ concentration ratio and shoot Na+ concentration on chromosome 5A may be identical to Nax2. The interval Xgwm6‐Xgwm538 on chromosome 4B for total dry weight was also identified in a previous study, both near the marker Xgwm6. The marker Xgwm6 may be useful for marker‐assisted selection. Six pairs of homoeologous QTLs were detected, showing synteny among the A, B and D genomes. These results facilitate understanding the mechanisms and the genetic basis of salt tolerance in wheat.  相似文献   

12.
Two hundred ninety-six Asian barley (Hordeum vulgare L.) accessions were assessed to detect QTLs underlying salt tolerance by association analysis using a 384 single nucleotide polymorphism (SNP) marker system. The experiment was laid out at the seedling stage in a hydroponic solution under control and 250 mM NaCl solution with three replications of four plants each. Salt tolerance was assessed by leaf injury score (LIS) and salt tolerance indices (STIs) of the number of leaves (NL), shoot length (SL), root length (RL), shoot dry weight (SDW) and root dry weight (RDW). LIS was scored from 1 to 5 according to the severity of necrosis and chlorosis observed on leaves. There was a wide variation in salt tolerance among Asian barley accessions. LIS and STI (SDW) were the most suitable traits for screening salt tolerance. Association was estimated between markers and traits to detect QTLs for LIS and STI (SDW). Seven significant QTLs were located on chromosomes 1H (2 QTLs), 2H (2 QTLs), 3H (1 QTL), 4H (1 QTL) and 5H (1 QTL). Five QTLs were associated with LIS and 2 QTLs with STI (SDW). Two QTLs associated with LIS were newly identified on chromosomes 3H and 4H.  相似文献   

13.
Lowland rice is often subject to iron toxicity which may lead to yield reduction. In order to cope with this nutrient disorder, plants have developed resistance strategies. The aim of this research was to assess morphological and physiological parameters linked to iron toxicity resistance mechanisms and to identify quantitative trait loci (QTLs) involved in their genetic determinism. A segregating population consisting of 164 recombinant inbred lines (RILs) derived from a cross between Azucena and IR64 was tested twice in hydroponics at the vegetative stage at 0 and 250 mg Fe2+ l−1. Morphological traits were measured on all 164 RILs. Physiological traits, which were too time-consuming to allow their measurement on all the population, were measured on the two parents and extreme individuals only, selected on the basis of their leaf bronzing index and shoot dry weight. A total of 24 putative QTLs was identified on chromosomes 1, 2, 3, 4, 7 and 11 for leaf bronzing index, shoot water content, shoot and root dry weight, relative variation of shoot and root dry weight, shoot iron concentration, stomatal resistance and chlorophyll content index. Several QTLs were detected in overlapping regions for different parameters. The pertinence of phenotyping extreme RILs only for a QTL analysis is discussed in this study. The QTL analysis allowed to better understand the physiological response of rice in the presence of an excess of ferrous iron, inclusive the relations existing between the stomata closure, the shoot water content reduction and the oxidative stress linked to these growth conditions.  相似文献   

14.
To study the salt tolerance genetics of sorghum, 181 recombinant inbred lines (RILs) were used to locate quantitative trait loci (QTLs) underlying salt stress adaptability. Six traits, namely, plant height (PH), stem diameter (SD), total biomass (TB), stem fresh weight (SFW), juice weight (JW) and Brix, were investigated under normal and salt stress conditions in two years. A total of 53 QTLs for the six traits under both conditions and their corresponding salt tolerance index (STI) were detected and phenotypic variation explained (PVE) ranged from 4.16% to 20.42%. Six of the QTLs, qTB6, qSFW9, qJW9, qBrix2, qBrix10 and qSTI-Brix9, were the main effect QTLs controlling salt tolerance and had a PVE more than 10%. qSFW9 and qJW9 colocalized in the same marker interval as SB5069-UGSM18 and had PVEs of 17.70% and 14.20%, respectively, with positive effects from L-Tian. QTL clusters controlling PH, TB, STI-TB, SFW and JW were consistently mapped in the marker interval of Xcup19-SB4177 on chromosome 7. These locations might serve as target sites for marker-assisted selection (MAS) in improving salt tolerance of sorghum.  相似文献   

15.
摘 要:[目的]研究稻作抗旱的根系特征及其遗传机理,发掘旱稻有利基因,从水旱稻杂交中选育高产耐旱的稻作品种提供理论基础和研究材料。[方法]以旱稻豪格劳为供体亲本,水稻沈农265为受体亲本,利用187个SSR标记构建了一套具有180个家系的旱稻渗入系群体,并采用单标记分析法,对拔节期根系6个性状:最长根长、粗根数、总根数、平均最粗根粗、根干重、总干重进行QTL定位。[结果]抽穗期共检测到QTL38个,其中影响上述六个性状的QTL数目分别是6、6、4、6、4和12,它们的总贡献率分别为29%、27%、21%、33%、23%和61%。除此,在粗根数和总根数中分别检测到3个和1个来自豪格劳的等位基因的加性效应为负,其余均为正。除平均根粗外,其它5个性状的加性效应都较大。[结论]89.5%的渗入位点对以沈农265为遗传背景的渗入系的6个性状根系有促进作用;定位到的影响不同根系性状的QTL多数成簇、集中分布;RM3853附近定位到影响四个性状的QTL,推测是一个在抽穗期与根系性状和抗旱密切相关的基因簇。  相似文献   

16.
Salinity is a major abiotic stress to barley (Hordum vulgare L.) growth and yield. In the current study, quantitative trait loci (QTL) for yield and physiological components at the late growth stage under salt stress and non-stress environments were determined in barley using a double haploid population derived from a cross between CM72 (salt-tolerant) and Gairdner (salt-sensitive). A total of 30 QTLs for 10 traits, including tiller numbers (TN), plant height, spikes per line (SPL), spikes per plant (SPP), dry weight per plant, grains per plant, grain yield, shoot Na+ (NA) and K+ concentraitions (K) in shoot, and Na+/K+ ratio (NAK), were detected, with 17 and 13 QTLs under non-stress and salt stress, respectively. The phenotypic variation explained by individual QTL ranged from 3.25 to 29.81%. QTL flanked by markers bPb-1278 and bPb-8437 on chromosomes 4H was associated with TN, SPL, and SPP under salt stress. This locus may be useful in the breeding program of marker-assisted selection for improving salt tolerance of barley. However, QTLs associated with NA, K, and NAK differed greatly between non-stress and salt stress environments. It may be suggested that only the QTLs detected under salt stress are really associated with salt tolerance in barley. D. Xue and Y. Huang contributed equally to the article.  相似文献   

17.
Low grain cadmium (Cd) and high grain zinc (Zn) rice cultivars have become the current rice breeding objectives. However, the genetic control of Cd and Zn concentrations in brown rice remains poorly understood, especially when grown in Cd-contaminated soil. In this study, quantitative trait loci (QTLs) associated with grain Cd and Zn concentrations and Cd/Zn ratio were identified using a doubled haploid population derived from a cross between japonica JX17 and indica ZYQ8 rice cultivars. Three and two QTLs were detected for Cd and Zn concentration in brown rice, respectively. Two QTLs associated with grain Cd/Zn ratio on chromosomes 3 and 6 were initially mapped. These QTLs accounted for 10.83–41.66% of the total variance of the three traits measured. Only one common locus on chromosome 6 was found for Cd concentration and Cd/Zn ratio. The lack of co-location of the QTLs for Cd and Zn concentrations in this mapping population suggests different genetic mechanisms. In summary, our results provide insight into the genetic basis of rice grain Cd and Zn accumulation; the isolated QTLs may be useful for marker-assisted selection and identification of genes associated with Cd and Zn accumulation in rice.  相似文献   

18.
‘Drought avoidance’ and ‘drought tolerance’ are two mechanisms by which plants adapt under water stress. These mechanisms are difficult to evaluate separately in field experiments. Using hydroponic culture, we studied the genetic control of drought tolerance in rice (Oryza sativa L.) without the effect of drought avoidance. A backcross inbred population of ‘Akihikari’ (lowland cultivar) × ‘IRAT109’ (upland cultivar) with 106 lines was cultured with (stressed condition) and without (non-stressed condition) polyethylene glycol (PEG) at seedling stage. The relative growth rate (RGR), specific water use (SWU), and water use efficiency (WUE) showed significant genotype × environment interactions with or without PEG, indicating that each line responded differently to water stress. A quantitative trait locus (QTL) analysis revealed that these interactions were QTL specific. A total of three QTLs on chromosomes 2, 4, and 7 were detected for RGR. The QTL on chromosome 7 had a constant effect across environments, while the QTL on chromosome 4 had an effect only under non-stressed condition and that on chromosome 2 only under stressed condition. The stress-specific QTL on chromosome 2 was not co-located with any QTLs for root system depth previously reported from the same mapping population. However, this QTL was co-located with a stress-specific QTL for SWU, suggesting that the control of transpiration was relevant to dry matter production under drought. We concluded that PEG-treated hydroponic culture is very effective for use in genetic analyses of drought tolerance at seedling stage.  相似文献   

19.
Rice is the most important cereal crop but is sensitive to salinity stress. Increased salinization is progressively reducing rice productivity, escalating calls for research to ensure sustainable food production. The genetic diversity available in cultivars provides a rich resource for discovering genes associated with salt tolerance which has not yet been sufficiently utilized. In this study, 54 QTLs associated with salt tolerance were detected through genome-wide association study (GWAS) using a core population consisting of 181 cultivars. We detected 17 loci significantly associated with dry weight ratio (DWR) for salt tolerance. In the region of a novel QTL qST-7.19 on chromosome 7, we identified a candidate gene encoding a multidrug and toxic compound extrusion (MATE) protein and further validated the effect by using near-isogenic line of the candidate gene. These QTLs and the candidate gene pave the ways for salinity tolerance improvement through molecular breeding.  相似文献   

20.
Quantitative trait loci for adventitious and lateral roots in rice   总被引:2,自引:0,他引:2  
H. Horii    K. Nemoto    N. Miyamoto    J. Harada 《Plant Breeding》2006,125(2):198-200
The mass of a root is determined by two underlying morphogenetic factors: (1) the length of the main root axis (root axis length: RAL), and (2) the amount of lateral root development generated by a unit length of the axis (branching index: BI). The mass of a rice adventitious root was partitioned into these two factors at the quantitative trait locus (QTL) level, using ‘Akihikari’ (a lowland cultivar as a recurrent parent) × ‘IRAT 109’ (an upland cultivar) backcross inbred lines. Four QTLs were detected for the dry weight of individual adventitious roots (root dry weight: RDW), which were associated with a QTL for RAL (chromosomes 1 and 9) or a QTL for BI (chromosomes 6 and 11). For BI, an additional QTL was detected on chromosome 1. The absence of co‐located QTLs suggested that RAL and BI are under separate genetic control. Despite its small population size and few replications, this study suggests that the partitioning of root mass into these underlying components could be useful for understanding the complexity involved in the genetic control of root growth.  相似文献   

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