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1.
Soto E Griffin M Arauz M Riofrio A Martinez A Cabrejos ME 《Journal of aquatic animal health》2012,24(2):81-90
Edwardsiella ictaluri was consistently isolated from the spleens, livers, and head kidneys of diseased Nile tilapia Oreochromis niloticus from a farm experiencing mortality events in several culture ponds. We describe the first published outbreak of E. ictaluri-induced edwardsiellosis in Nile tilapia. Pure cultures of the isolated bacteria were characterized both biochemically and molecularly. Biochemical analysis was performed using the API-20E and RapID One systems, and antimicrobial susceptibility was determined by the broth microdilution method. Molecular analysis involved sequencing of the 16S rRNA gene, species-specific real-time polymerase chain reaction (PCR), and PCR-mediated genomic fingerprinting (rep-PCR). Pairwise sequence analysis of the 16S rRNA gene identified the case isolates to be a 100% match to E. ictaluri cultured from channel catfish in the southeastern United States. However, rep-PCR analysis identified the case isolates to be genetically different from representative strains isolated from disease outbreaks in cultured channel catfish in Mississippi. Infectivity challenges (intraperitoneal injection and immersion) demonstrated that a representative E. ictaluri strain isolated from tilapia was pathogenic to naive tilapia, reproducing clinical signs and mortality, thereby establishing Koch's postulates. 相似文献
2.
Esteban Soto Matt Griffin Maziel Arauz Andres Riofrio Alexis Martinez Maria Eugenia Cabrejos 《Journal of aquatic animal health》2013,25(2):81-90
Abstract Edwardsiella ictaluri was consistently isolated from the spleens, livers, and head kidneys of diseased Nile tilapia Oreochromis niloticus from a farm experiencing mortality events in several culture ponds. We describe the first published outbreak of E. ictaluri–induced edwardsiellosis in Nile tilapia. Pure cultures of the isolated bacteria were characterized both biochemically and molecularly. Biochemical analysis was performed using the API-20E and RapID One systems, and antimicrobial susceptibility was determined by the broth microdilution method. Molecular analysis involved sequencing of the 16S rRNA gene, species-specific real-time polymerase chain reaction (PCR), and PCR-mediated genomic fingerprinting (rep-PCR). Pairwise sequence analysis of the 16S rRNA gene identified the case isolates to be a 100% match to E. ictaluri cultured from channel catfish in the southeastern United States. However, rep-PCR analysis identified the case isolates to be genetically different from representative strains isolated from disease outbreaks in cultured channel catfish in Mississippi. Infectivity challenges (intraperitoneal injection and immersion) demonstrated that a representative E. ictaluri strain isolated from tilapia was pathogenic to naïve tilapia, reproducing clinical signs and mortality, thereby establishing Koch's postulates. Received August 30, 2011; accepted January 30, 2012 相似文献
3.
A temperature-sensitive (Ts) mutant strain of Ornithobacterium rhinotracheale (ORT) was developed after exposure of the wild-type organism to N-methyl-N'-nitro-N-nitrosoguanidine. The Ts mutant strain grew at 31 C but had its growth inhibited at 41 C unlike wild-type parent strain. The Ts mutant and parent strains were characterized. Morphologic and biochemical properties of wild-type and mutant strains did not show any differences. The strains were also characterized by polymerase chain reaction (PCR)-based fingerprinting methods. Results showed similar patterns in repetitive sequences by repetitive PCR (enterobacterial repetitive intergenic consensus, highly conserved repeated DNA elements present in Streptococcus pneumoniae (BOX), repetitive extragenic palindromic, and Salmonella enteritidis repetitive element primers); however, random amplified polymorphic DNA fingerprinting was able to differentiate mutant and parent strains showing a unique pattern for each of the ORT strains. The rationale for the use of a Ts strain as a vaccine is based on the ability of the mutant to colonize the upper respiratory tract but not the lower respiratory tract and systemic system of the birds, where the wild-type strain causes severe lesions. In a preliminary evaluation, Ts strain of ORT was recovered from tracheas and choanae of Ts-treated turkeys for 13 days postadministration of the strain either in drinking water or by oculonasal instillation. Humoral immune response was detected in Ts-vaccinated but not in control group birds after 3 wk postadministration. Results suggest that Ts strain of ORT has promising potential use as a live vaccine for ORT. 相似文献
4.
Seroprevalence and identification of Ornithobacterium rhinotracheale from broiler and broiler breeder flocks in Thailand 总被引：1，自引：0，他引：1
Ornithobacteriosis is an infectious disease of avian species that has been reported in almost all countries around the world, except Thailand. The objectives of this study were to determine the seroprevalence of Ornithobacterium rhinotracheale (ORT) and to isolate and identify ORT in broilers and broiler breeders in Thailand. Chicken antibodies had been randomly checked from 17 farms (19 flocks) of broilers and 23 farms (28 flocks) of broiler breeders. The seropositive flocks were 63% and 100% in broilers and broiler breeders, respectively. The sera analysis showed that the individual 280 broiler sera antibody responses were 67.5% negative, 12.9% suspect, and 19.6% positive. The individual antibody responses of 510 broiler breeder sera revealed 12.2% negative, 38.0% suspect, and 49.8% positive samples. The bacteria were isolated and identified by polymerase chain reaction (PCR). Bacterial isolation and identification revealed that nine isolates of the 12 PCR analysis samples showed positive results to PCR analysis. All the positive PCR samples were collected from the broiler breeder farms. 相似文献
5.
为了确定采集自内蒙古地区某牧场的病料内的病原菌,对其进行细菌的分离培养。将分离培养出的2株病原菌进行16S rDNA扩增、细菌生化鉴定、致病性试验以及细菌耐药性试验。结果表明,分离菌在伊红美蓝琼脂培养基上可生长出暗红色或黑色并且带有金属光泽的菌落;镜检可见,分离菌为革兰阴性杆菌;分离菌生化鉴定结果与大肠杆菌标准菌株ATCC 25922测定的结果相一致;分离菌的16S rDNA与大肠杆菌标准菌株16S rDNA PCR扩增结果相一致;分离到的2株大肠杆菌均具有致病性,对多种抗生素均有耐药性。结果提示,该次分离得到的病原菌主要为具有多重耐药性的致病性大肠杆菌。 相似文献
6.
浙江省蚕区桑树“凋萎”症状病因诊断 总被引：1，自引：1，他引：0
从浙江省临安、桐庐等地桑园中的"凋萎"桑树根、茎部获得151个细菌分离物样品。经离体水培接种试验表明,这些分离物均可引起桑树"凋萎"症状,其形态、大小、染色反应、培养性状与对照番茄青枯菌(Ralstonia so-lanacearum)相近;PCR鉴定其中125个分离物为雷尔氏菌(Ralstonia solanacearum)。结合田间发生症状,将桑树"凋萎"症状诊断为细菌性青枯病。从125个雷尔氏菌株中选择16个典型菌株进行研究,根据生理小种划分标准,这些菌株均为雷尔氏菌的生理小种1,其中75%为青枯菌的生化型Ⅴ、25%为青枯菌的生化型Ⅲ。 相似文献
7.
Species and strain specific identification of lactic acid bacteria in complex microflora 总被引：2，自引：0，他引：2
The identification of lactic acid bacteria in a complex microbiota using bacteriological culture in combination with phenotypic and genotypic identification techniques is laborious and time-consuming. New molecular methods permit a fast and culture-independent characterisation of such microbiota. Denaturing gradient gel electrophoresis (DGGE) of PCR fragments of the 16S rRNA gene has been proven to be a suitable tool. Here the use of PCR-DGGE with group specific primers is described to investigate the dynamic of sourdough microbiota from addition of the starter until the microbiota remained stable. Species were identified by applying an identification ladder obtained from reference strains or by sequence analysis of the PCR fragments. Furthermore, a method for detection of strains in complex microbiota is described. A strain specific chromosomal DNA fragment of Lactobacillus paracasei LTH 2579 was isolated applying the subtraction hybridisation. Based on the acquired target sequence a specific PCR system was established and combined with a PCR system specific for the species L. paracasei. Use of this detection system permitted to identify and quantitatively detect L. paracasei LTH 2579 in fermented sausages and upon consumption in faecal samples. 相似文献
8.
Specific identification of Gallibacterium by a PCR using primers targeting the 16S rRNA and 23S rRNA genes 总被引：1，自引：0，他引：1
Bojesen AM Vazquez ME Robles F Gonzalez C Soriano EV Olsen JE Christensen H 《Veterinary microbiology》2007,123(1-3):262-268
Gallibacterium was recently established as a new genus including organisms previously reported as Pasteurella anatis, [Actinobacillus] salpingitidis and avian Pasteurella haemolytica-like organisms. The aim of the present study was to develop a PCR method allowing unambiguous identification of Gallibacterium. PCR primers positioned in the 16S rRNA (1133fgal) and 23S rRNA (114r) genes were defined and their specificity was subsequently tested on 122 strains. Twenty-five of the strains represented all of the presently available 15 phenotypic variants of Gallibacterium from different geographical locations, 22 other strains represented other poultry associated bacterial species or bacteria which could pose a differential diagnostic problem including members of the families Pasteurellaceae, Enterobacteriaceae and Flavobacteriaceae, and finally 75 Gallibacterium field strains isolated from Mexican chicken egg-layers. Specific amplicons were generated in all 100 Gallibacterium strains tested, whereas none of the non-Gallibacterium strains tested positive. Correct identification was confirmed by hybridization with the Gallibacterium specific probe GAN850. Two internal amplification control strategies were successfully incorporated into the PCR assay, one based on amplification of the house-keeping gene rpoB (sharing target DNA) and another based on addition of trout DNA (foreign target DNA) and amplification with beta-actin specific primers. In conclusion, the described PCR assay enables specific identification of Gallibacterium and will thus stand as a strong alternative to the present diagnostic methods. 相似文献
9.
Twenty morphologically similar strains of a Mycobacterium sp isolated from milk of cows with bovine mastitis in the US Department of Agriculture dairy herd were identified as M smegmatis. Mastitis isolates submitted from Vermont and Washington also were identified as M smegmatis. A scheme for presumptive identification of rapidly growing mycobacteria was developed, using culture media and bacteriologic techniques commonly used in mastitis diagnostic laboratories. Important tests used were acid-fast staining, rapidity of growth, pigmentation, nitrate reduction, arylsulfatase activity, mucic acid utilization, acid production from galactose, rhamnose, and inositol, and growth at 45 C and 52 C. 相似文献
10.
Pusterla N Leutenegger CM Sigrist B Chae JS Lutz H Madigan JE 《Veterinary parasitology》2000,90(1-2):129-135
A real-time quantitative PCR using the TaqMan fluorogenic detection system (TaqMan PCR) was established for identification of Ehrlichia risticii, the agent of Potomac horse fever (PHF). The TaqMan PCR identified an 85 base pair section of the 16S rRNA gene by use of a specific fluorogenic probe and two primers. This technique was specific for eight tested E. risticii strains. The TaqMan system identified 10 copies of a cloned section of the 16S rRNA gene of E. risticii. The sensitivity and specificity of the TaqMan PCR were similar to those of conventional nested PCR. The TaqMan PCR was evaluated on horses with infectious colitis and on freshwater stream snails collected from regions with a history of PHF. E. risticii could be detected in 22 of 153 (14.4%) horses with infectious colitis and in 25 of 234 (10.7%) snails in the TaqMan PCR. The same results were obtained in the conventional nested PCR. The Ehrlichia-load was in the range of 10,000-9,000,000 and 35,000-680, 000,000 Ehrlichia equivalents per microg leukocyte DNA and snail DNA, respectively. 相似文献
11.
为了解引起山羊皮下脓肿的主要病原,本研究从四川乐至县、金堂县和蓬溪县3个山羊养殖场无菌采集患皮下脓肿病羊脓液样本19份,通过细菌分离培养、生化试验及特异性PCR方法对其病原进行检测和鉴定,并通过药敏试验测定分离病原的药物敏感性。结果显示,PCR扩增法共检测出病原菌19株,其中伪结核棒状杆菌、金黄色葡萄球菌及化脓隐秘杆菌分离率分别为57.9%(11/19)、26.3%(5/19)及15.8%(3/19);采用细菌分离培养法分离到3种形态不同的病原菌共计17株,其中革兰氏阳性短杆菌经鉴定为伪结核棒状杆菌,分离率57.9%(11/19),革兰氏阳性球菌经鉴定为金黄色葡萄球菌,分离率为21.1%(4/19),革兰氏阳性杆菌经鉴定为化脓隐秘杆菌,分离率为10.5%(2/19),PCR鉴定较细菌分离培养法灵敏度更高。3种病原菌对丁胺卡那、氟苯尼考等多种药物敏感。结果表明,伪结核棒状杆菌是引起该地区山羊皮下脓肿的主要病原,金黄色葡萄球菌和化脓隐秘杆菌同样可引起山羊皮下脓肿,特异性PCR方法较细菌分离培养更为高效、准确。本研究结果可为后续进一步分析其生物学特性,以及四川地区山羊皮下脓肿的综合性防制提供依据。 相似文献
12.
Ornithobacterium rhinotracheale (ORT) is a bacterium responsible for a respiratory disease in turkeys and chickens and has been identified as one of the emerging respiratory bacterial pathogens. The clinical signs and lesions caused by ORT are very similar to those caused by other respiratory infectious agents; therefore, an accurate diagnostic test is necessary to identify the infection. In this study, we have investigated the use of outer membrane proteins of ORT in an indirect enzyme-linked immunosorbent assay (ELISA) to detect the exposure to ORT infection. Outer membrane proteins of ORT were extracted and used as an antigen in ELISA to detect infection in turkeys exposed to different serotypes of ORT. The ELISA results were compared with the conventional serum plate agglutination test. The agglutination test detected specific antibodies for ORT in 65% of experimentally infected turkeys during the first 2 wk of infection. The ELISA detected up to 100% of infected birds for 8 wk postinfection. The results suggest that ELISA is able to detect the exposure to ORT in later stages of the infection and this assay can be used in serologic surveillance of ORT infection for poultry in the field. 相似文献
13.
Bessa MC Michael GB Canu N Canal CW Cardoso M Rabsch W Rubino S 《Research in veterinary science》2007,83(3):302-310
This study aimed to investigate the relatedness of porcine Salmonella enterica subsp. enterica (S.) serovar Typhimurium strains isolated in Southern Brazil. Sixty-six isolates from pigs belonging to three commercial companies were submitted to phage typing, XbaI-macrorestriction (PFGE), IS200 hybridization, rep-PCR, antimicrobial susceptibility testing, and PCR assay targeting the spvR region. All strains presented a unique rep-PCR pattern and 63 strains had a common IS200 profile. One pulse-type (XA) was the most prevalent (39/66 strains) and included strains of phage types DT177, DT192, DT194 and RDNC. The spvR region was detected in three strains, which harboured plasmids of 90 kb. High rates of tetracycline, sulfonamide and streptomycin resistance were found. Isolates from farms located in different geographic regions but associated to the same commercial companies clustered together and presented a common resistance profile. Results suggested that clonal groups of S. Typhimurium are present in pig commercial companies in Southern Brazil. 相似文献
14.
E A ter Laak J H Noordergraaf R P Dieltjes 《Zentralblatt für Veterin?rmedizin. Reihe B. Journal of veterinary medicine. Series B》1992,39(8):553-562
The prevalence of mycoplasmas in the respiratory tracts of 148 pneumonic calves originating from 25 herds in the Netherlands is reported. Four types of culture media were used to isolate mycoplasmas: solid modified Edward medium, 2 types of Friis media, and A7B differential agar medium. Mycoplasmas were isolated both from nasal swab specimens and lung lavage fluids collected from live calves and from nasal mucosa and lung tissue specimens collected post mortem. All of the mycoplasma strains isolated could be identified as either Ureaplasma diversum (isolated from 80% of 25 herds), Mycoplasma dispar (92%), M. bovirhinis (88%), M. bovis (20%), M. bovigenitalium (4%), M. arginini (16%), or M. canis (12%). Isolation rates of M. dispar and U. diversum were considerably higher from lung lavage fluids than from nasal swab specimens. M. bovis was detected only in fattening herds and not in dairy herds. The respiratory tracts of 75% of the calves examined contained at least 2 mycoplasma species. In total, 25 different combinations of mycoplasma species were detected in specimens collected from noses and lungs. The pathogenic species U. diversum and M. dispar had not been isolated before in the Netherlands. 相似文献
15.
Englund S 《Veterinary microbiology》2003,96(3):277-287
There is an increasing demand for fast and reliable methods to distinguish Mycobacterium avium subsp. paratuberculosis (M. paratuberculosis) from closely related mycobacteria and also a need for rapid strain specific typing of clinical isolates for epidemiological reasons. In the present study, the potential of rep-PCR as a fingerprinting method for M. paratuberculosis was assessed and compared to conventional RFLP. A PCR assay was designed and optimised to obtain reproducible fingerprints of mycobacterial DNA with primers targeting the enterobacterial intergenic consensus (ERIC) sequence and the M. paratuberculosis specific insertion sequence IS900. Reproducible fingerprints were obtained with 60 strains of M. paratuberculosis, 16 strains of M. avium subsp. avium, 3 strains of M. intracellulare, and 11 other mycobacterial strains. A species-specific band pattern that was clearly distinguishable from that of other mycobacteria was obtained with M. paratuberculosis. The rep-PCR did not detect any differences among M. paratuberculosis strains of different RFLP types, and was therefore not considered as an alternative fingerprinting method. However, the species-specific band pattern make IS900/ERIC-PCR a suitable alternative for distinguishing M. paratuberculosis from other mycobacteria, especially in cases of IS900 PCR positive mycobacteria. The fingerprinting method reported was fast and easy to perform, and produced highly reproducible results. 相似文献
16.
J K Miflin X Chen R R Bragg J M Welgemoed J M Greyling R F Horner P J Blackall 《The Onderstepoort journal of veterinary research》1999,66(1):55-57
Seventy five bacteria tentatively identified as Haemophilus paragallinarum (the causative agent of infectious coryza), eight identified as Ornithobacterium rhinotracheale and 13 identified as NAD-independent Pasteurella species were isolated from chickens with respiratory infection in various provinces in South Africa. The isolates were characterized by conventional biochemical and serological methods. A polymerase chain reaction (PCR) assay specific for H. paragallinarum was used to identify the cultures directly from colonies. The PCR assay gave positive results for all isolates that were identified by conventional methods as H. paragallinarum, irrespective of whether they were nicotinamide adenine dinucleotide (NAD)-dependent (43 isolates) or NAD-independent (32 isolates). The eight isolates that were identified by conventional methods as O. rhinotracheale and the 13 isolates identified as various Pasteurella species gave negative results in the PCR assay. This study has demonstrated that colony PCR is a rapid method for uniquely identifying both NAD-dependent and NAD-independent strains of H. paragallinarum and distinguishing them from other bacteria, such as O. rhinotracheale and Pasteurella species. 相似文献
17.
旨在应用基于p113基因特异性的PCR方法对绵羊肺炎支原体(Mycoplasma ovipneumoniae,Mo)安徽流行株进行分子生物学鉴定。利用已报道的Mo p113基因引物,采用PCR方法对前期分离的Mo安徽流行株AH-01、AH-02、AH-03和AH-04进行p113基因扩增,并对菌株的p113基因扩增产物进行序列测定及分析。结果表明,利用建立的PCR方法,4株Mo临床分离株均可扩增到大小约为287 bp的特异性目的片段;安徽流行株AH01、AH02、AH03和AH04的p113基因序列两两之间的相似性均在95%以上,与Mo ATCC 29419和Mo贵州流行株GZ-QX1的p113基因序列相似性在88.6%～89.3%。提示基于p113基因的PCR方法可以用于绵羊肺炎支原体的分子生物学鉴定,为开展由Mo引起的绵羊和山羊肺炎的流行病学调查和科学防控提供了新方法。 相似文献
18.
甘肃地区牛源金黄色葡萄球菌分子鉴定及RAPD分型 总被引：1，自引：0，他引：1
本研究目的是分离鉴定引起甘肃地区奶牛乳房炎的金黄色葡萄球菌,掌握其基因型情况。利用16S、23SrRNA保守序列PCR扩增对乳房炎奶样中的金黄色葡萄球菌进行鉴定,并进行RAPD基因分型。结果表明,310份奶样中共分离出金黄色葡萄球菌100株,RAPD结果显示这100株金黄色葡萄球菌均可得到清晰的RAPD指纹图谱,扩增产物在2～7条带之间,具有多种带型组成。通过聚类分析100株菌产生11个基因型,其中Ⅰ型4株,Ⅱ型4株,Ⅲ型10株,Ⅳ型13株,Ⅴ型7株,Ⅵ型24株,Ⅶ型16株,Ⅷ型6株,Ⅸ型4株,Ⅹ型10株,Ⅺ型2株。Ⅵ型为该地区的流行优势菌群,不同牛场各基因型菌株分布有明显差异。本研究说明牛场的环境与养殖条件对病原菌流行传播有明显的影响,这一结果对地区性奶牛乳房炎的防治提供了可靠的理论依据。 相似文献
19.
本研究旨在调查山东地区鸡源沙门氏菌的流行情况及毒力基因分布。在山东地区规模化养鸡场采集病料,利用四硫磺酸钠煌绿增菌液（TTB）进行沙门氏菌选择增菌,并对分离菌株进行纯化培养、革兰氏染色、生化试验、培养基菌落形态鉴定,利用沙门氏菌属及血清型特异性引物对分离菌进行PCR扩增鉴定,并利用PCR方法检测分离菌中33种毒力基因分布。结果显示,分离菌在LB固体培养基和麦康凯培养基上呈无色半透明、光滑且边缘整齐的菌落,镜检为革兰氏阴性、两端钝圆的小杆菌。生化试验、培养基菌落形态鉴定、沙门氏菌属及血清型特异性引物PCR扩增结果显示,共分离到25株鸡源沙门氏菌,其中肠炎沙门氏菌9株,鸡白痢沙门氏菌和鼠伤寒沙门氏菌各8株。毒力基因检测结果显示,33种毒力基因在25株分离菌中均有检出,其中20种毒力岛基因（invJ、virK、sopA、mogA、hilA、hisJ、ssaB、ssaQ、ssiD、misL、mgtC、orf319、siiE、siiD、bcfA、pipC、sopB、araB、spoB和avrA基因）、肠毒素基因（stn基因）及菌毛毒力基因（fimA基因）检出率均为100%;2种毒力岛基因（sipA和sodC基因）及4种毒力质粒基因（spvA、spvC、spvD和spvR基因）检出率均为96%,spoE基因检出率为68%,fliC基因检出率为36%,gipA与spvB基因检出率均为32%,sseL基因检出率为4%;25株鸡源沙门氏菌中,分别携带31种（8株）、30种（1株）、29种（15株）和24种（1株）毒力基因;毒力基因gipA和spvB只在鼠伤寒沙门氏菌中检出,且在鼠伤寒沙门氏菌中检出率为100%。本研究结果表明,山东地区鸡源沙门氏菌主要为肠炎沙门氏菌、鸡白痢沙门氏菌和鼠伤寒沙门氏菌,分离菌皆携带多种毒力基因,其中gipA和spvB毒力基因只在鼠伤寒沙门氏菌中检出,可作为鼠伤寒沙门氏菌鉴定的备选基因之一。 相似文献
20.
桑树根际固氮细菌的分离鉴定及固氮酶活力测定 总被引：5，自引：1，他引：4
利用固氮细菌可降低桑园化肥使用量和提高桑叶产量与品质。采用选择性培养基,从桑树根际分离获得24个具有固氮能力的细菌分离株,以rep-PCR基因指纹分析聚类为18个聚类群。经固氮酶活性测定,PA19、PA2和PK1菌株具有较强的固氮酶活性。利用菌落形态特征观察及16S rDNA碱基序列测定和同源性分析,对3株细菌进行鉴定的结果是:PA19菌株为中慢生根瘤菌属(Mesorhizobium sp.),PA2菌株为假单胞菌属(Pseudomonas sp.),PK1菌株为土壤杆菌属(Agrobacterium sp.)。 相似文献