Implementation of two high through-put techniques in a novel application: detecting point mutations in large EMS mutated plant populations     

Antoine LF Gady  Freddy WK Hermans  Marion HBJ Van de Wal  Eibertus N van Loo  Richard GF Visser  Christian WB Bachem 《Plant methods》2009,5(1):13-14

Background  

The establishment of mutant populations together with the strategies for targeted mutation detection has been applied successfully to a large number of organisms including many species in the plant kingdom. Considerable efforts have been invested into research on tomato as a model for berry-fruit plants. With the progress of the tomato sequencing project, reverse genetics becomes an obvious and achievable goal.  相似文献   

The Pelagos Sanctuary for Mediterranean marine mammals     

Giuseppe Notarbartolo‐di‐Sciara  Tundi Agardy  David Hyrenbach  Tullio Scovazzi  Patrick Van Klaveren 《水产资源保护:海洋与淡水生态系统》2008,18(4):367-391

• 1. In February 2002, France, Italy and Monaco agreed to establish an international sanctuary for Mediterranean marine mammals. The resulting Pelagos Sanctuary encompasses over 87500 km² of the north‐western Mediterranean Sea, extending between south‐eastern France, Monaco, north‐western Italy and northern Sardinia, and surrounding Corsica and the Tuscan Archipelago.
• 2. The Pelagos Sanctuary illustrates how the tenets of Marine Protected Area (MPA) design can be reconciled with the dynamic nature of oceanic systems, because its spatial scale was defined by oceanographic and ecological considerations, specifically the location of the Ligurian permanent frontal system.
• 3. By expanding protective measures beyond national waters, the Pelagos Sanctuary also sets a precedent for the implementation of pelagic protected areas in the high seas. The Pelagos Sanctuary will contribute to the conservation of the Mediterranean Sea at two scales: (i) locally, by protecting important cetacean foraging and breeding grounds in the Ligurian Sea, and by providing ‘umbrella’ protection to other marine predators in this area; and (ii) regionally, by empowering other conservation measures, such as the Specially Protected Areas Protocol of the Barcelona Convention and the wider goals of the Agreement on the Conservation of Cetaceans of the Black and Mediterranean Seas (ACCOBAMS).
• 4. However, because few cetacean species are resident within the Sanctuary, their effective long‐term conservation will require large‐scale management and coordinated monitoring throughout the Mediterranean basin.

Copyright © 2007 John Wiley & Sons, Ltd.  相似文献   

How much variation can be explained by seasonal,spatial and environmental effects in nekton assemblages of the Terminos Lagoon?     

Julia Ramos Miranda  David Mouillot  Atahualpa Sosa Lopez  Thang Do Chi  Domingo Flores Hernández 《水产资源保护:海洋与淡水生态系统》2008,18(5):508-517

• 1. The coastline is very sensitive to both climatic and human influences but also provides essential goods and services upon which human welfare depends. Species inhabiting these coastal areas provide valuable resources and enhance ecosystem functioning: it is therefore essential to understand the main factors influencing species abundance patterns. The aim of this study is to estimate the amount of variation in nekton coastal assemblages explained by spatial, temporal and environmental variables.
• 2. Nekton sampling was carried out over 17 months in the Terminos Lagoon, a reserve area situated in the Gulf of Mexico, using a shrimp trawl. At each station, 11 environmental variables were recorded. The influence of seasonal, spatial and environmental variables on nekton species abundance was analysed using Partial Canonical Correspondence Analysis (PCCA).
• 3. The explanatory variables explained only 19.7% of the total observed variation in the nekton community for the Terminos Lagoon. The major part of the explained variation was due to the spatial effect (9.2%), while environmental variables and seasonality explained only 3.6% and 0.8%, respectively, suggesting the necessity to consider experimental fishing design in such artisanal fisheries.
• 4. Results also suggest focusing on more integrative indicators of community structure such as measures of taxonomic diversity based on presence/absence or on measures related to functional attributes of communities rather than using species abundance patterns to predict changes in coastal ecosystems.

Copyright © 2007 John Wiley & Sons, Ltd.  相似文献   

Comparative energy and economic analyses of conventional and System of Rice Intensification (SRI) methods of rice production in Thai Nguyen Province,Vietnam     

Tuyet Thi Anh Truong  John Fry  Phu Van Hoang  Hoang Huy Ha 《Paddy and Water Environment》2017,15(4):931-941

The consumption of energy inputs in agricultural production has been increasing rapidly during the past decades. However, given the limitations and costs of non-renewable energy, increasing production while using the least energy possible has become a major concern of most nations. Prompted by this concern, we conducted a face-to-face survey of 90 farming households in Thai Nguyen Province, Vietnam, to find out how energy is being used in agriculture and, specifically, in their rice production. Through analysis of energy input–output balances, combined with economic efficiency analysis, a comparison was made of conventional and SRI methods of rice production. The study found that applying the SRI method can save around 23% of energy inputs, while increasing energy outputs by 11%. Economic benefits per hectare also rise by more than 8 million dong (USD 364) compared to those under the conventional cultivation system. The study also showed conflicts between the energy and economic balances for manual compared with machine ploughing operations. This study contributes to providing an overview of energy consumption in rice cultivation at the household level. Its findings can help stakeholders to assess current policies and make better decisions on the uses of energy in agricultural production. In addition, the comprehensive approach taken here to analysing energy use and efficiency could expand the analysis and comparison of energy uses at sectoral or activity level—still a new field in Vietnam and many other countries.  相似文献   

Induced expression of selected plant defence related genes in pot azalea, <Emphasis Type="Italic">Rhododendron simsii</Emphasis> hybrid     

Gil Luypaert  Johan Witters  Johan Van Huylenbroeck  Patrick De Clercq  Jan De Riek  Ellen De Keyser 《Euphytica》2017,213(10):227

A set of putative marker genes to study plant defense responses against Polyphagotarsonemus latus, a key pest in the production of Rhododendron simsii hybrids, was selected and validated. Genes belonged to the biosynthetic pathway of phytohormones jasmonic acid (JA) (RsLOX, RsAOS, RsAOC, RsOPR3 and RsJMT) and salicylic acid (SA) (RsPAL and RsICS). Furthermore, RsPPO, a putative marker gene for oxidative stress response was successfully cloned from R. simsii. A CTAB-based extraction protocol was optimized to assure excellent RNA quality for subsequent RT-qPCR analysis. The RT-qPCR protocol was extensively tested and RsRG7 and RsRG14 were selected as reference genes from a geNorm pilot study. Validation of the marker genes was done after application with elicitors [methyl jasmonate (MeJA), coronatine, β-aminobutyric acid and acibenzolar-Smethyl] or wounding. Both 100 μM MeJA and 0.1 μM coronatine had a significant effect on the expression of all marker genes. Foliar application of MeJA on the shoots resulted in a significantly earlier response when compared to root application and subsequent sampling of the shoots. Expression patterns after MeJA treatment were generally the same in six R. simsii genotypes: ‘Nordlicht’, ‘Elien’, ‘Aiko Pink’, ‘Michelle Marie’, ‘Mevrouw Gerard Kint’ and ‘Sachsenstern’. Wounding resulted in the same expression patterns as MeJA treatment except for RsJMT. None of the genotypes showed a significant induction of the latter gene 6 h upon wounding. Findings of these experiments indicated that the tolerant genotype ‘Elien’ has low basal expression levels of RsPPO. This might be the first step towards the breeding of mite-tolerant genotypes.  相似文献   

High vegetative compatibility diversity of Cryphonectria parasitica infecting sweet chestnut (Castanea sativa) in Britain indicates multiple pathogen introductions     

A. Pérez-Sierra  P. Romón-Ochoa  C. Gorton  A. Lewis  H. Rees  S. Van Der Linde  J. Webber 《Plant pathology》2019,68(4):727-737

Chestnut blight, caused by Cryphonectria parasitica, was identified in Devon, UK, in December 2016. Intensive surveys detected the disease at further sites in Devon (seven), Berkshire (one), Dorset (one), Derbyshire (four) and a cluster of eight sites in southeast London. Over 570 survey samples were tested, and 227 were positive for C. parasitica by isolation and real-time PCR. A total of 227 isolates were tested for mating type, and 197 screened for vegetative compatibility group (VCG) and compared with VCGs known from mainland Europe. The same isolates were also screened for the presence of Cryphonectria hypovirus 1 (CHV-1). Eleven VCGs were identified within the UK population. Five corresponded to already known European VCGs but six were unique. The European VCGs mainly came from the Devon, Dorset, Berkshire and Derbyshire disease outbreaks, whilst unique VCGs were almost exclusively from the southeast London cluster. Both mating types were detected, but only one mating type was present at each site, with the exception of a single Devon site. Perithecia of C. parasitica were never observed at any site. CHV-1 was found in seven isolates from three different locations and was always subtype-I, which has limited hypovirulence. Therefore, although CHV-1 is associated with C. parasitica at some outbreaks, it probably has limited impact on virulence. The diversity of VCGs and their distribution at outbreak sites, together with findings of CHV-1, suggests C. parasitica has been introduced to the UK multiple times over at least two decades through international plant trade.  相似文献   

Development of enzymes for robust aryloxyphenoxypropionate and synthetic auxin herbicide tolerance traits in maize and soybean crops     

Clayton T Larue  Michael Goley  Lei Shi  Artem G Evdokimov  Oscar C Sparks  Christine Ellis  Andrew M Wollacott  Timothy J Rydel  Coralie E Halls  Brook Van Scoyoc  Xiaoran Fu  Jeffrey R Nageotte  Adewale M Adio  Meiying Zheng  Eric J Sturman  Graeme S Garvey  Marguerite J Varagona 《Pest management science》2019,75(8):2086-2094

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Root-growth response of winter barley to subsoiling     

G. Ide  G. Hofman  C. Ossemerct  M. Van Ruymbeke 《Soil & Tillage Research》1984,4(5):419-431

Root growth of winter barley was studied on 2 Belgian silt loam soils after subsoiling to 60 cm depth. In the first field (well-drained) rooting depth increased significantly after removal of a plough pan. At the flowering stage, total root weight in the soil layers between 25–50 cm and 50–75 cm was 125% and 325%, respectively, higher on the subsoiled plots than on the control. The P₂O₅ and K₂O concentrations in the roots were significantly increased by 20% and 40%, respectively. In the second field (imperfectly drained) with initially relatively high bulk densities in the subsoil, the influence of subsoiling was negligible. In this study, the clearly-shown root-growth retardation that resulted in a lower yield on the control, seemed to be caused by the high penetration resistance in the plough sole (> 3MPA) rather than poor aeration status induced by the high bulk densities.  相似文献   

Evaluation of the simultaneous effects of processing parameters on the iron and zinc solubility of infant sorghum porridge by response surface methodology     

Kayodé AP  Nout MJ  Bakker EJ  Van Boekel MA 《Journal of agricultural and food chemistry》2006,54(12):4253-4259

The purpose of this study was to improve the micronutrient quality of indigenous African infant flour using traditional techniques available in the region. Response surface methodology was used to study the effect of duration of soaking, germination, and fermentation on phytate and phenolic compounds (PC), pH, viscosity, and the in vitro solubility (IVS) of iron and zinc in infant sorghum flour. The phytate and the PC concentrations of the flour were significantly modified as a result of the duration of germination and fermentation and their mutual interaction. These modifications were accompanied by a significant increase in % IVS Zn after 24 h of sprouting. Except for the interaction of soaking and fermentation, none of the processing parameters exerted a significant effect on the % IVS Fe. The viscosity of the porridge prepared with the flour decreased significantly with the duration of germination, making it possible to produce a porridge with high energy and nutrient density. The use of germination in combination with fermentation is recommended in the processing of cereals for infant feeding in developing countries.  相似文献   

Influence of storage practices on acrylamide formation during potato frying     

De Wilde T  De Meulenaer B  Mestdagh F  Govaert Y  Vandeburie S  Ooghe W  Fraselle S  Demeulemeester K  Van Peteghem C  Calus A  Degroodt JM  Verhé R 《Journal of agricultural and food chemistry》2005,53(16):6550-6557

A number of parameters linked to storage of potatoes were evaluated with regard to their potential to influence the acrylamide formation in French fries. Acrylamide, which is a potential human carcinogen, is reported to be formed during the frying of potatoes as a result of the reactions between asparagine and reducing sugars. This study was conducted using three potato varieties (Bintje, Ramos, and Saturna) typically used in Belgium, The Netherlands, and the northern part of France for French fry and crisp production. Saturna, mainly used in crisp production, appeared to be the least susceptible for acrylamide formation during frying. Especially storage at low temperatures (4 degrees C) compared to storage at 8 degrees C seemed to enhance acrylamide formation due to a strong increase in reducing sugars caused by low-temperature storage. Because of the reversible nature of this physiological reaction, it was possible to achieve a significant reduction of the reducing sugars after a reconditioning of the cold-stored potatoes for 3 weeks at 15 degrees C. All changes in acrylamide concentrations could mainly be explained by the reducing sugar content of the potato (R2 = 0.84, n = 160). This means that, by ensuring a low reducing sugar content of the potato tuber, the risk for acrylamide formation will largely be reduced. Finally the use of a sprout inhibitor did not influence the composition of the potato, and thus acrylamide formation was not susceptible to this treatment.  相似文献