Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses     

Wardatou Boukari  Denis Filloux  Jean Heinrich Daugrois  Emmanuel Fernandez  Dimitre Mollov  Claudia Kaye  Martha Hincapie  Alexander Sanchez  Jianping Wang  Philippe Roumagnac  Philippe Rott 《Plant pathology》2020,69(6):1060-1069

Viruses in the genus Mastrevirus (family Geminiviridae), including those infecting sugarcane, have natural geographical ranges almost exclusively restricted to Africa and the Indian Ocean islands off the African coast. Only sugarcane white streak virus (SWSV) in Barbados and sugarcane striate virus (SStrV) in Florida and Guadeloupe are known to infect a few sugarcane varieties in the Western Hemisphere. In this study, PCR assays were developed to detect these two viruses in sugarcane. Five hundred and seventy-one DNA samples from Saccharum species and interspecific hybrids from the Miami World Collection of sugarcane and related grasses were tested for the presence of SStrV and SWSV by PCR. No variety was found infected by SWSV but SStrV was detected in 19 varieties. PCR data were confirmed by sequencing amplified fragments (248 bp). These fragments shared 93%–100% nucleotide identity with SStrV sequences from the GenBank database. SStrV isolates were distributed in six phylogenetic groups, including the four strains of the virus. Most varieties infected by SStrV originated from Asia, thus confirming a previous hypothesis stating that this virus originated from this continent. Absence of SStrV in commercial sugarcane in Florida also suggested that this virus has not been spread in this location, while infected plants have been present for several decades.  相似文献   

Non‐spherical pearl layers in the Polynesian ‘black‐lipped’ Pinctada margaritifera: The non‐nacreous deposits compared to microstructure of the shell growing edge     

Jean‐Pierre Cuif  Yannicke Dauphin  Gilles Luquet  Oulfa Belhadj  Stphan Rouzire  Murielle Salom  Marine Cotte  Andrea Somogyi  Kadda Medjoubi  Cedrik Lo  Denis Saulnier 《Aquaculture Research》2020,51(2):506-522

Cultivated pearls frequently exhibit morphological irregularities making obvious that mineral deposition was irregularly distributed onto nucleus surface. Taking advantage of experimental cultivations with short durations (from 10 days to few months), these irregular deposits predating occurrence of the nacre were investigated in Polynesian pearls by biochemical characterizations and a series of physical methods. Diversity in the resulting data suggests that various in‐depth alterations of the biomineralization mechanism may have occurred during the grafting process, leading to diversity in the biochemical pathways to nacreous deposition. This allows a precise discussion of current views about pearl formation. The “reversed shell theory” is formally disproved through point to point comparison with development of the shell growing edge. Similarity of pearl formation with “regeneration” or “shell repair” is also discussed, emphasizing the differences between these concepts.  相似文献   

Evaluation of the Potential of Lipid-Extracted Chlorella vulgaris Residue for Yarrowia lipolytica Growth at Different pH Levels     

Guillaume Delfau-Bonnet  Nabila Imatoukene  Tiphaine Clment  Michel Lopez  Florent Allais  Anne-Lise Hantson 《Marine drugs》2022,20(4)

Projections show that the cultivation of microalgae will extend to the production of bio-based compounds, such as biofuels, cosmetics, and medicines. This will generate co-products or residues that will need to be valorized to reduce the environmental impact and the cost of the process. This study explored the ability of lipid-extracted Chlorella vulgaris residue as a sole carbon and nitrogen source for growing oleaginous yeasts without any pretreatment. Both wild-type Yarrowia lipolytica W29 and mutant JMY3501 (which was designed to accumulate more lipids without their remobilization or degradation) showed a similar growth rate of 0.28 h⁻¹ at different pH levels (3.5, 5.5, and 7.5). However, the W29 cell growth had the best cell number on microalgal residue at a pH of 7.5, while three times fewer cells were produced at all pH levels when JMY3501 was grown on microalgal residue. The JMY3501 growth curves were similar at pH 3.5, 5.5, and 7.5, while the fatty-acid composition differed significantly, with an accumulation of α-linolenic acid on microalgal residue at a pH of 7.5. Our results demonstrate the potential valorization of Chlorella vulgaris residue for Yarrowia lipolytica growth and the positive effect of a pH of 7.5 on the fatty acid profile.  相似文献   

Changes in fatty acid and sterol composition during oogenesis in the pearl oyster Pinctada margaritifera     

Isabelle Vahirua‐Lechat  Frédéric Laure  Jean René LeCoz  Jean Pierre Bianchini  Mereani Bellais  Gilles Le Moullac 《Aquaculture Research》2008,39(16):1739-1746

The fatty acid and sterol composition of the oyster Pinctada margaritifera during oogenesis and in eggs was analysed. No major differences were observed during oogenesis, but the egg composition was significantly different from that of gonads. The amount of saturated fatty acids was the highest in eggs and the C16:0 predominant (P<5%); by contrast, the amount of 22:6(n‐3) was significantly lower (P<5%) than in gonads. No major differences were observed for the polar lipid (PL) composition during oogenesis. The main free sterols in gonads and eggs were cholesterol and brassicasterol. Among free sterols, the proportion of cholesterol diminished continuously from the beginning to the end of gonad maturation, and this decrease persisted in eggs after spawning. Cholesterol represented 40% to 55% of the sterol ester encountered in gonad and eggs. This study allowed us to investigate the fatty acid and sterol composition during oogenesis of the pearl oyster P. margaritifera, leading to a clearer understanding of the nutritional requirements of pearl oyster during the reproduction process.  相似文献   

Variability in conspecific predation among longnose lancetfish Alepisaurus ferox in the western Indian Ocean   总被引：1，自引：0，他引：1  

Evgeny V Romanov  Frédéric Ménard  Veniamin V Zamorov  Michel Potier 《Fisheries Science》2008,74(1):62-68

ABSTRACT:   Conspecific predation among longnose lancetfish Alepisaurus ferox was investigated in four spatio-temporal strata of the western Indian Ocean. The cannibalism level varied from 0 to 45.5% by frequency of occurrence and was negatively related with abundance of non-evasive prey (such as crustaceans Charybdis smithii and Natosquilla investigatoris ) and foraging success. Predation by lancetfish is often described as a non-selective process, constrained by local prey availability and by its feeding speed during an attack of prey. Our results show that lancetfish may adapt its opportunistic foraging behavior, feeding on non-conspecific abundant prey such as crustaceans when available, and switching to a high level of conspecific predation in poor waters.  相似文献   

小麦EST—SSRs分子标记的特性及其遗传作图     

张立异  Leroy  Philip  Bernard  Michel  张庆勤  Sourdille  Pierre 《麦类作物》2008,28(1):11-20

为了解普通小麦EST来源的微卫星的多样性,从大约1000个包含微卫星的ESTs中设计了300对引物,研究和评估了它们的多态性水平,并且将多态性标记加入到现有的遗传图谱中。在五种不同类型的重复单元中,三个碱基的重复单元出现最多,占到77％。几乎所有的EST—SSRs标记（99．3％）的重复单元都含有G-C碱基对。37．4％的微卫星都是四次重复。对于扩增和多态性,300对引物中有60对没有扩增,21．3％的扩增引物没能产生预期的扩增片断。58％的标记至少在所用8个材料的一个中显示出多态性。W7984和Opata组合表现出最高的多态性水平。大多数普通小麦EST—SSRs标记的重复次数小于10,并且4次重复是最为普遍的。81个新的EST—SSR位点被添加到两个已有的参照遗传图谱中（62个加到ITMI,19个加到CTCS）。研究结果表明小麦EST-SSRs标记展示了一些不同于基因组微卫星的特异特征,在标记发展和其他遗传应用中,这就使得它们能够成为一种非常有价值的资源。  相似文献   

Changes in sorghum production,soil P forms and P use efficiency following long-term application of manure,compost and straw in a Ferric Lixisol     

Dohan Mariam Soma  Delwendé Innocent Kiba  Nana Ewusi-Mensah  Zacharia Gnankambary  François Lompo  Michel Papoaba Sedogo 《Acta Agriculturae Scandinavica, Section B - Plant Soil Science》2018,68(5):401-411

Low phosphorus availability in cultivated soils limits sustainable crop production in sub‐Saharan Africa. This study aimed at evaluating the effect of long‐term application of different types of organic amendments on soil P forms, P use efficiency and sorghum yields. A long term experiment established in 1980 at Saria in Burkina Faso, comparing the effects of manure, compost and sorghum straw was used. Manure and compost significantly increased organic P and resin‐P by about 35% and 64%, respectively after 10 and 32 years of sorghum cultivation, and HCl‐P after 32 years of cultivation compared to the control. Manure significantly increased NaHCO₃-Pi and NaOH-Pi by 63% and 26%, respectively compared to the control. Sorghum straw had little effect on measured soil P forms. Manure and compost were the best in increasing sorghum grain yield, which effect were strongly correlated to soil pH, carbon and nitrogen. The partial factors productivities of P resulting from the application of studied organic amendments were similar and low, but significantly higher than that of the control treatment. Organic amendments with high P content, maintaining soil carbon and pH could be used to improve soil P availability, sorghum yield and reduce the demand for mineral phosphorus fertilizers.  相似文献   

Technique for rapid, small-scale analysis of vitamin C levels in fruit and application to a tomato mutant collection     

Stevens R  Buret M  Garchery C  Carretero Y  Causse M 《Journal of agricultural and food chemistry》2006,54(17):6159-6165

We present a technique for easy, rapid analysis of both total and reduced forms of vitamin C in fruits using microplates and a plate reader. This technique has been compared with a spectrofluorometric technique classically used for assaying vitamin C in fresh tomato. We have applied these methods to a population of 118 tomato mutant lines and controls in search of variability for this trait. Six lines, identified as having high vitamin C levels, and four lines having low vitamin C levels have been chosen for further study. The vitamin C levels have been compared with sugar concentration, dry matter content, fruit weight, titratable acidity, and firmness. The correlations that often exist in tomato varieties between sugar and vitamin C content (positive correlation) or fruit weight and vitamin C content (negative correlation) can be uncoupled in the lines selected for further analysis.  相似文献   

Accumulation and extractability of grape skin tannins and anthocyanins at different advanced physiological stages     

Fournand D  Vicens A  Sidhoum L  Souquet JM  Moutounet M  Cheynier V 《Journal of agricultural and food chemistry》2006,54(19):7331-7338

Quantitative and qualitative modifications of tannins and anthocyanins in grape skin were investigated at different dates of harvest, from berries sorted on the basis of their density. Free anthocyanins accumulated until 170 g/L of sugars in pulp before undergoing a slight decrease. Changes in anthocyanin composition were observed with increasing sugar levels in the pulp that reflected structural differences between classes of anthocyanins. The proportion of methoxylated anthocyanins continued to increase in the skin as sugar accumulated while the proportion of coumaroylated anthocyanins initially increased (up to 200 g/L of sugars in the pulp) and then rapidly decreased. In comparison, no major quantitative nor qualitative change was observed for tannins, except for a slight increase of the mean degree of polymerization. Whatever the physiological stage of the pulp, the extraction yield of skin phenolics into hydroalcoholic solution for 5 h was lower than 77% for anthocyanins and 38% for proanthocyanidins. For both classes of compounds, no clear evolution in these extraction yields could be observed as sugars accumulated in pulp (from 162.6 to 275.0 g/L). Nevertheless, some structural features within each family of compounds significantly influenced extractability, for example, a lower extraction yield for coumaroylated anthocyanins and for tannins with a high degree of polymerization. Finally, no direct relationship could be found in extraction media between the amounts of all red pigments (measured in acidic conditions) and the color intensity at 520 nm (measured in wine-like model solutions).  相似文献   

Fine-earth translocation by tillage in stony soils in the Guadalentin, south-east Spain: an investigation using caesium-134     

Timothy A. Quine  Gerard Govers  Jean Poesen  Des Walling  Bas van Wesemael  Jose Martinez-Fernandez 《Soil & Tillage Research》1999,51(3-4):279-301

Tillage erosion is increasingly recognised as an important soil erosion process on agricultural land. In view of its potential significance, there is a clear need to broaden the experimental database for the magnitude of tillage erosion to include a range of tillage implements and agricultural environments. The study discussed in this paper sought to address the need for such data by examining tillage erosion by a duckfoot chisel plough in stony soils on steep slopes in a semi-arid environment. Results of the investigation of coarse fraction (rock fragment) translocation by tillage in this environment have been presented elsewhere and the paper focuses on tillage translocation and erosion of the fine earth. Tillage translocation was measured at 10 sites, representing both upslope and downslope tillage by a duckfoot chisel plough on five different slopes, with tangents ranging from 0.02 to 0.41. A fine-earth tracer, comprising fine earth labelled with ¹³⁴Cs, was introduced into the plough layer before tillage. After a single pass of the plough, incremental samples of plough soil were excavated and sieved to separate the fine earth from the rock fragments. Translocation of the fine-earth tracer was established by analysing the ¹³⁴Cs content of the samples of fine earth. These data were used to establish translocation distances for each combination of slope and tillage direction. Translocation distances of the fine earth were not significantly different from translocation distances of the coarse fraction. For all sites, except uphill on the 0.41 slope, translocation distances were found to be linearly related to slope tangent. The soil flux due to tillage for each site was calculated using the translocation distance and the mass per unit area of the plough layer. For slopes with tangents <0.25, the relationship between soil flux and tangent was linear and the soil flux coefficient derived was 520–660 kg m⁻¹ per pass. This is much larger than the coefficients found in other studies and this high magnitude is attributed to the non-cohesive nature and high rock fragment content of the soil in this investigation. A second contrast with previous studies was found in non-linearity in the relationship between soil flux and tangent when steeper slopes were included. This was a product of variation in plough depth between the steepest slopes and the remainder of the study area. On the basis of the study it is suggested that an improved understanding of tillage erosion may be obtained by considering the dual processes of tillage detachment (mass per unit area of soil subject to tillage) and tillage displacement (equivalent to translocation distance per pass) in assessing, comparing and modelling tillage translocation. An improved model is proposed that recognises the complexity of soil redistribution by tillage, provides a framework for process-based investigation of the controls on tillage fluxes, and allows identification of potential self-limiting conditions for tillage erosion.  相似文献