Identification of potential genomic regions for egg weight by a haplotype-based genome-wide association study using Bayesian methods     

A. H. Khaltabadi Farahani  H. Mohammadi  M. H. Moradi  H. A. Ghasemi 《British poultry science》2020,61(3):251-257

ABSTRACT

1. Theoretically, haplotype blocks might be a more suitable alternative to SNP genotypes as they are usually better at capturing multi-allelic QTL effects, compared to individual SNP genotypes in genome-wide association studies. The objectives of this study were to identify genomic regions related to egg weight traits by Bayesian methods (BayesA, BayesB, and BayesN) that fit fixed-length haplotypes using GenSel software.

2. Genotypes at 294,705 SNPs, that were common on a 600K Affymetrix chip, were phased for an egg-laying hen population of 1,063 birds. Recorded traits included first egg weight (FEW) and average egg weight at 28, 36, 56, 66, 72 and 80 weeks of age.

2. Fitting 1Mb haplotypes from BayesB resulted in the highest proportion of genetic variance explained for the egg weight traits. Based on the trait, the genetic variance explained by each marker ranged from 27% to 76%.

3. Different haplotype windows associated with egg weight traits only explained a small percentage of the genetic variance.

4. The top one 1-Mb window on GGA1 explained approximately 4.05% of total genetic variance for the FEW. Candidate genes, including PRKAR2B, HMGA2, LEMD3, GRIP1, EHBP1, MAP3K7, and MYH were identified for egg weight traits.

5. Several genomic regions, potentially associated with egg weight traits, were identified, some of which overlapped with known genes and previously reported QTL regions for egg production traits.  相似文献   

Effect of saline irrigation water on agronomical and phytochemical characters of chamomile (Matricaria recutita L.)     

Kambiz Baghalian  Ali Haghiry  Mohammad Reza Naghavi  Abodollah Mohammadi 《Scientia Horticulturae》2008,116(4):437-441

In arid and semi-arid regions, where water availability is a major limitation in crop production, using alternative water resources, such as saline water is one way to utilize lands. Chamomile (Matricaria recutita L.) as an annual medicinal herb may be considered as an economic substitute for field crops irrigated with fresh water since it has adaptability to wide range of climate and soil. A field examination was conducted during 2004–2005 using complete randomized block design with four replications in order to evaluate the effects of saline irrigation water on morphological characters, mineral content, oil quantity (content, yield), oil composition and apigenin content of chamomile. In each plot, 0.6 g/m² of seeds were grown in 4 rows. The irrigation water had five different salinity levels (0, 4, 8, 12 and 16 dS m⁻¹). The investigated characters through cultivation were fresh weight of flower (g), dry weight of flower (g), dry weight of aerial stems (g), dry weight of root (g), oil yield (kg/h), oil content (%), oil quality and apigenin content (%). After harvesting, the content of minerals (Na⁺, Cl⁻, K⁺, Ca²⁺, Mg²⁺) were evaluated in aerial parts and roots of each plot. Mean comparisons for fresh flower weight in different treatments showed that fresh flower yield decreased with increasing salinity and it was higher in control compared to others. Analysis of variance showed that saline irrigation water had no significant effect on oil quantity (yield and content), oil quality (chemical composition) or apigenin content. Our results showed that chamomile is able to maintain all its medical properties, under saline condition and could be cultivated economically in such conditions.  相似文献   

Ethnobotanical Uses and Antimicrobial Properties of Plants in Small‐Scale Tropical Fish Farms: The Case of Indonesian Fish Farmers in Java (Indonesia)          下载免费PDF全文

Domenico Caruso  Angela Maria Lusiastuti  Taukhid Taukhid  Jean‐Christophe Avarre  Munti Yuhana  Samira Sarter 《Journal of the World Aquaculture Society》2017,48(1):83-92

Among the most common plants used by fish farmers in Java, 18 were selected for deeper ethnobotanical and laboratory investigation into their antimicrobial activity. These plants are mainly used against fish diseases, but with no precise therapeutic indication, leading to low specificity of use. Leaves, which were the most commonly used part of plants, were generally placed directly in water or less frequently added to the feed. Disk diffusion tests showed that 15 plants of the 18 (83%) displayed varying degrees of antibacterial activity and that Streptococcus agalactiae was more sensitive than Aeromonas hydrophila. Crude ethanolic extracts (EE) were more active than water macerates (WM), and minimum inhibitory concentrations (MICs) ranged from 12.5 to 25 mg/mL. Only the EE of Piper betle had an inhibitory effect against A. hydrophila. No MIC was found for any of the WM studied here. Furthermore, both the EE and, to a lesser extent, the WM of active plants were able to reduce bacterial growth by more than 99%, even at doses below their MICs. These results suggest that these plant extracts have a potential for eco‐friendly prevention of bacterial fish diseases.  相似文献   

Can dogs carry the global pandemic candidate avian influenza virus H9N2?     

H Amirsalehy  H Nili  A Mohammadi 《Australian veterinary journal》2012,90(9):341-345

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Comparison of different models for estimation of genetic parameters of early growth traits in the Mehraban sheep.     

P Zamani  H Mohammadi 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2008,125(1):29-34

Genetic parameters for birth weight (BW), weaning weight (WW) and pre-weaning daily gain (PWDG) in Iranian Mehraban sheep were estimated using restricted maximum likelihood (REML) procedure. Six different animal models were fitted, differentiated by including or excluding maternal effects, with and without covariance between maternal and direct genetic effects. The estimates for direct heritability ranged from 0.26 to 0.53, 0.18 to 0.32 and 0.15 to 0.33 for BW, WW and PWDG respectively. The estimates were substantially higher when maternal effects, either genetic or environmental, were ignored in the model. The results of this study show that full models with maternal genetic and environmental effects gave the most accurate estimates for early growth traits.  相似文献   

Dietary supplementation effects of Pediococcus acidilactici as probiotic on growth performance,digestive enzyme activities and immunity response in zebrafish (Danio rerio)     

Mojtaba Mohammadi Arani  Amir Parviz Salati  Omid Safari  Saeed Keyvanshokooh 《Aquaculture Nutrition》2019,25(4):854-861

This study was carried out to assess the effects of Pediococcus acidilactici on zebrafish (Danio rerio). Different levels of P. acidilactici including 0, 1 × 10⁶, 2 × 10⁶, 4 × 10⁶ and 8 × 10⁶ colony‐forming unit per g of the diet (cfug^?1) were examined in fish with 120 ± 10 mg weight for 60 days in a completely randomized design. The results showed that the best growth indices were recorded in group 4 × 10⁶ cfug^?1 (p < 0.05). The highest number of total viable count and lactic acid bacteria of intestine were found in group 4 × 10⁶ cfug^?1 (p < 0.05). The maximum activity of digestive enzymes including amylase, lipase, protease and alkaline phosphatase was observed in group 4 × 10⁶ cfug^?1. The highest activity for superoxide dismutase was recorded in group 4 × 10⁶ cfug^?1 while catalase, glutathione peroxidase and glutathione reductase showed the highest activity in group 8 × 10⁶ cfug^?1. The most growth inhibition zone of Aeromonas hydrophylla, Flavobacterium columnare, Vibrio anguillarum and Edwardsiella tarda was found in group 4 × 10⁶ cfug^‐1 (p < 0.05). Therefore, P. acidilactici as a probiotic improved growth and immunity of the zebrafish and could be used by zebrafish farmers.  相似文献   

Effect of water salinity on embryonic development of longfin yellowtail Seriola rivoliana larvae     

Samira Reinoso  Jorge Mora‐Pinargote  Milton Bohrquez‐Cruz  Stanislaus Sonneholzner  Wilfrido Argüello‐Guevara 《Aquaculture Research》2020,51(3):1317-1321

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Beneficial effects of Bacillus subtilis on water quality,growth, immune responses,endotoxemia and protection against lipopolysaccharide‐induced damages in Oreochromis niloticus under biofloc technology system     

Ghasem Mohammadi  Taida Juliana Adorian  Gholamreza Rafiee 《Aquaculture Nutrition》2020,26(5):1476-1492

The present research explored the effects of Bacillus subtilis on water quality, growth, immune responses, endotoxemia and protection against lipopolysaccharide (LPS) damages in Nile tilapia Oreochromis niloticus under biofloc system. B. subtilis was added at 0, 1, 2, 3 and 4 grams (1.19 × 10⁸ CFU/g) per kg of basal diet, named T1 (control), T2, T3, T4 and T5, respectively, and fed to fish (14.82 ± 0.42 g) for 50 days. The concentrations of TAN, NO₂ and NO₃ were significantly reduced, and fish fed probiotics displayed significantly better growth performances versus the control, concomitantly with significantly enhanced activities of digestive enzymes. They also showed significantly declined serum glucose and cholesterol vice versa significantly improved immune responses (total protein, albumin, globulin, lysozyme, alternative complement, protease, immunoglobulins, alkaline phosphatase and respiratory burst), antioxidant capacity (superoxide dismutase, total antioxidant capacity, malondialdehyde) and skin mucus parameters (total protein, lysozyme, alternative complement, protease, immunoglobulins). Meanwhile, significantly lower endotoxin (LPS) concentrations were detected in the intestines and serum of fish fed probiotics. LPS challenge induced profound oxidative stress and impaired immune responses. Interestingly, probiotic alleviated LPS‐induced damages and restored mentioned parameters. In conclusion, B. subtilis effectively enhanced fish production, immunity and protection against LPS‐induced damages in tilapia under biofloc system.  相似文献   

Hematology of great sturgeon (<Emphasis Type="Italic">Huso huso</Emphasis> Linnaeus, 1758) juvenile exposed to brackish water environment     

Asad Mohammadi Zarejabad  Mohammad Ali Jalali  Mohammad Sudagar  Somayeh Pouralimotlagh 《Fish physiology and biochemistry》2010,36(3):655-659

The effect of environmental salinity on hematological parameters of great sturgeon Huso huso juveniles was studied. Five-month-old juveniles (mean body weight 28.3 ± 2.1 g) were subjected to 0, 3, 6, 9, and 12 ppt salinities. The hematological parameters were assessed after a period of 20 days rearing at these salinities. After transfer from fresh water to brackish water, red blood cells, hematocrit, haemoglobin and mean corpuscular haemoglobin decreased, but mean corpuscular volume increased. Mean corpuscular haemoglobin concentration, white blood cells, monocyte counts, and eosinophil counts showed no significant variations with increase in environmental salinity. An increase was found in lymphocyte counts according to the increase of salinity from 0 to 12 ppt, while the fresh water control group maintained basal levels. Decrease in neutrophil counts was observed in great sturgeon with increase in environmental salinity. These data show significant effect of salinity on the blood parameters of great sturgeon.  相似文献   

Goal programming approach for sustainable forest management （case study in Iranian Caspian forests）     

Soleiman Mohammadi  Limaei Maryam  Seddigh Kouhi  Teymour Rostami  Sharaji 《林业研究》2014,25(2):429-435

We used a goal programming technique to determine the optimal harvest volume for the Iranian Caspian forest. We collected data including volume, growth, wood price at forest roadside, and variable harvesting costs. The allometric method was used to quantify seques- trated carbon. Regression analysis was used to derive growth models. Expected mean price was estimated using wood price and variable harvesting costs. Questionnaire was used to determine the constraints and the equation coefficients of the goal programming model. The optimal volume was determined using the goal programming method according to multipurpose forest management. LINGO software was used for analysis. Results indicated that the optimum volumes of species were 250.25 m3.ha-1 for beech, 59 m3.ha-1 for hornbeam, 73 m3.ha-1 for oak, 41 m3.ha-1 for alder, and 32 m3.ha-1 for other species. The total optimum volume is 455.25 m3.ha-1.  相似文献