Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm     

Fernando Brito Lopes  Fernando Baldi  Ludmilla Costa Brunes  Marcos Fernando Oliveira e Costa  Eduardo da Costa Eifert  Guilherme Jordão Magalhães Rosa  Raysildo Barbosa Lobo  Cláudio Ulhoa Magnabosco 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2023,140(1):1-12

This study was carried out to evaluate the advantage of preselecting SNP markers using Markov blanket algorithm regarding the accuracy of genomic prediction for carcass and meat quality traits in Nellore cattle. This study considered 3675, 3680, 3660 and 524 records of rib eye area (REA), back fat thickness (BF), rump fat (RF), and Warner–Bratzler shear force (WBSF), respectively, from the Nellore Brazil Breeding Program. The animals have been genotyped using low-density SNP panel (30 k), and subsequently imputed for arrays with 777 k SNPs. Four Bayesian specifications of genomic regression models, namely Bayes A, Bayes B, Bayes Cπ and Bayesian Ridge Regression methods were compared in terms of prediction accuracy using a five folds cross-validation. Prediction accuracy for REA, BF and RF was all similar using the Bayesian Alphabet models, ranging from 0.75 to 0.95. For WBSF, the predictive ability was higher using Bayes B (0.47) than other methods (0.39 to 0.42). Although the prediction accuracies using Markov blanket of SNP markers were lower than those using all SNPs, for WBSF the relative gain was lower than 13%. With a subset of informative SNPs markers, identified using Markov blanket, probably, is possible to capture a large proportion of the genetic variance for WBSF. The development of low-density and customized arrays using Markov blanket might be cost-effective to perform a genomic selection for this trait, increasing the number of evaluated animals, improving the management decisions based on genomic information and applying genomic selection on a large scale.  相似文献   

Using midday stem water potential for scheduling deficit irrigation in mid–late maturing peach trees under Mediterranean conditions     

José Manuel Mirás-Avalos  Francisco Pérez-Sarmiento  Rosalía Alcobendas  Juan José Alarcón  Oussama Mounzer  Emilio Nicolás 《Irrigation Science》2016,34(2):161-173

Irrigation techniques that reduce water applications are increasingly applied in areas with scarce water resources. In this study, the effect of two regulated deficit irrigation (RDI) strategies on peach [Prunus persica (L.) Batsch cv. “Catherine”] performance was studied over three growing seasons. The experimental site was located in Murcia (SE Spain), a Mediterranean region. Two RDI strategies (restricting water applications at stage II of fruit development and postharvest) based on stem water potential (Ψ_s) thresholds (?1.5 and ?1.8 MPa during fruit growth and ?1.5 and ?2.0 MPa during postharvest) were compared to a fully irrigated control. Soil water content (θ_v), Ψ_s, gas exchange parameters, vegetative growth, crop load, yield and fruit quality were determined. RDI treatments showed significantly lower values of θ_v and Ψ_s than control trees when irrigation water was restricted, causing reductions in stomatal conductance and photosynthesis rates. Vegetative growth was reduced by RDI, as lower shoot lengths and pruning weights were observed under those treatments when compared to control. However, fruit size and yield were unaffected, and fruit quality was slightly improved by RDI. Water savings from 43 to 65 % were achieved depending on the year and the RDI strategy, and no negative carryover effect was detected during the study period. In conclusion, RDI strategies using Ψ_s thresholds for scheduling irrigation in mid–late maturing peach trees under Mediterranean conditions are viable options to save water without compromising yield and even improving fruit quality.  相似文献   

A comparative description of two farmer-managed irrigation systems in Nepal     

Edward D. Martin  Robert Yoder 《Irrigation and Drainage Systems》1988,2(2):147-172

The organization of two farmer-managed irrigation systems in the western hills of Nepal is described by examining the ways in which the activities of water allocation, water distribution, maintenance, and resource mobilization are performed. Due to the topography and environment, these two organizations are structured primarily to mobilize the large amount of labor required for maintenance of the intake and canal. Both organizations precisely define each member's water allocation. In one system, water is allocated in proportion to the area of an individual's land holding, while in the other water allocation is by purchased shares. These two cases were used to analyze the importance of the principle of water allocation for expansion of area irrigated and equity of access to irrigation. Evidence from the two systems shows that in this hill environment water allocation by purchased shares provides the individual incentive and an organizational mechanism for efficient development of irrigation resources. Expansion of area irrigated and equity of access to irrigation were found to be greater in the system which allocates water by purchased shares than where water was allocated in proportion to area irrigated.  相似文献   

Artificial inoculation and susceptibility of Pinus armandii to Dothistroma septosporum     

Zuzana Jánošíková  Emília Ondrušková  Katarína Adamčíková 《Forest Pathology》2023,53(5):e12826

Dothistroma needle blight (DNB) is a serious needle disease of conifers that primarily affects pine species (Pinus spp.). Dothistroma septosporum is one of the DNB pathogens that has a diverse range of host species excluding Pinus armandii. In 15 inoculated P. armandii seedlings, D. septosporum acervuli were observed in 43 infected needles of ten seedlings with a mean disease severity of 1.11% at 25 weeks after inoculations, demonstrating the potential of D. septosporum to cause symptoms on the needles of P. armandii via artificial inoculation. The disease severity of P. armandii was similar to the positive control, Pinus nigra (median 0.75 for P. armandii to 0.70 for P. nigra), thus, P. armandii acts under artificial conditions as a susceptible host species.  相似文献   

Management strategy influences landscape patterns of high-severity burn patches in the southwestern United States     

Singleton  Megan P.  Thode  Andrea E.  Sánchez Meador  Andrew J.  Iniguez  Jose M.  Stevens  Jens T. 《Landscape Ecology》2021,36(12):3429-3449

Landscape Ecology - Spatial patterns of high-severity wildfire in forests affect vegetation recovery pathways, watershed dynamics, and wildlife habitat across landscapes. Yet, less is known about...  相似文献   

Multivariate analysis of invasive plant species distributions in southern US forests     

Lázaro-Lobo  Adrián  Ramirez-Reyes  Carlos  Lucardi  Rima D.  Ervin  Gary N. 《Landscape Ecology》2021,36(12):3539-3555

Landscape Ecology - Invasive plants cause significant impacts in forested areas throughout the world. However, little is known about the relative importance of environmental drivers on the...  相似文献   

Contrasting edge and pasture matrix effects on ant diversity from fragmented landscapes across multiple spatial scales     

Lasmar  Chaim J.  Queiroz  Antônio C. M.  Rosa  Clarissa  Carvalho  Nathália S.  Schmidt  Fernando A.  Solar  Ricardo R. C.  Paolucci  Lucas N.  Cuissi  Rafael G.  Ribas  Carla R. 《Landscape Ecology》2021,36(9):2583-2597

Landscape Ecology - Harmful effects of habitat loss and fragmentation can be detected across multiple spatial scales, yet most studies that aim to characterize these effects take place at a single...  相似文献   

Effect of Density at Harvest on the Growth Performance and Profitability of Hatchery‐reared Spotted Rose Snapper,Lutjanus guttatus,Cultured in Floating Net Cages          下载免费PDF全文

Carlos Humberto Hernández  Crisantema Hernández  Francisco Javier Martínez‐Cordero  Nicolás Castañeda‐Lomas  Guillermo Rodríguez‐Domínguez  Albert G. J. Tacon  Eugenio Alberto Aragón‐Noriega 《Journal of the World Aquaculture Society》2016,47(1):51-60

This study evaluated the effect of the density at harvest on the performance and profitability of hatchery‐reared spotted rose snapper cultured in cages. The fish were stocked at harvest densities of 15, 20, and 22 kg/m³ in cages of 222 and 286 m³. More than 39,000 snapper fingerlings with an initial weight of 14 g were stocked. The fish were fed an extruded diet and cultured over a 360 d period. The thermal growth coefficient ranged from 0.04 to 0.05 and survival was 95% for all treatments, with the highest final weight (436.8 g) observed for fish reared at a density of 20 kg/m³. The allometric value b indicated that hatchery‐raised, cage‐cultured snapper were heavier than their wild counterparts. The major costs were feed (ranging from 44.7–45.9%), labor (22.4–32.6%), and seed costs (20.2–26.1%). The total production cost ranged from US$ 6.5 to US$ 7.5/kg. The baseline scenario was not economically feasible. However, a 10% increase in the sales price resulted in increases in the internal rate of return (183%) and net present value (US$ 97,628.9). These results suggest that L. guttatus has the potential for commercial production in cages.  相似文献   

Reflected‐light Influences the Coloration of the Peppermint Shrimp,Lysmata boggessi (Decapoda: Caridea)          下载免费PDF全文

Natalia S. Calvo  Magaly RoldÁn‐Luna  Jorge A. Argáez‐Sosa  Gemma L. Martínez‐Moreno  Maite Mascaró  Nuno Simões 《Journal of the World Aquaculture Society》2016,47(5):701-711

One alternative to contribute to the reduction of the pressure on coral reef ecosystems brought about by an increasing demand for marine aquarium ornamentals is to improve and further develop the culture of desirable species for trade. Peppermint shrimp from the genus Lysmata are among the most intensively traded decapod in the trade and while several studies have been conducted to improve its culture, individuals obtained from culture facilities are generally paler than those collected from the wild. Because color is a fundamental component of the price tag on most marine ornamental live species, poorly colored animals command a lower price, reducing competitiveness. In this study, we evaluate the influence of tank background color (reflected light) on the morphological coloration change of Lysmata boggessi. In a 15‐d experiment, 30 individuals were exposed either to reflected‐red or white light and the relative change of coloration between initial and final moments was quantified with photography (RGB color model). At the end of the experimental period, shrimp exposed to red‐reflected light presented a more intense red coloration than those exposed to white‐reflected light. These results demonstrate that a simple change in background tank color can enhance shrimp external coloration. Such a cheap‐to‐implement procedure can support the culture of more colorful, hence more valuable ornamental shrimp that can compete with those captured from the wild.  相似文献   

Environment not ‘nativeness’ dictates reproductive trait shifts in Ponto‐Caspian gobies          下载免费PDF全文

Markéta Konečná  Michal Janáč  Kevin Roche  Pavel Jurajda 《Ecology of Freshwater Fish》2016,25(1):167-170

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