Bioinformatically mined simple sequence repeats in UniGene of Citrus sinensis     

Asheesh Shanker  Aarti BhargavaRicha Bajpai  Stuti SinghSucharita Srivastava  Vinay Sharma 《Scientia Horticulturae》2007

Characterization of microsatellites is extremely important for the development of molecular markers. Here, we present the detection and abundance of microsatellites or simple sequence repeats (SSRs) in UniGene sequences of Citrus sinensis. A total of 427 SSRs were mined in 8786 UniGene sequences downloaded from National Center for Biotechnology Information (NCBI). Depending on the repeat units, the length of SSRs ranged from 14 to 21 for mono-, 14 to 48 for di-, 18 to 48 for tri-, 24 to 40 for tetra- and 42 bp for hexa-nucleotide repeats. Average density of SSRs (1SSR/12.92 kb of 5518.71 kb sequences mined) suggests that only 4.43% of sequences contained SSRs. Di-nucleotide repeats were most frequent repeat type (49.41%) followed by tri-nucleotide repeats (41.45%). An attempt was made to design primer pairs for 427 identified SSRs but these were found only for 216 sequences. The positions of SSRs with respect to open reading frame (ORF) detected and annotation of sequences containing SSRs were also carried out to assign function to each of the sequences.  相似文献   

Development of Eco-friendly and Non-hazardous Weed Control Technology for Lowland Rice by Smothering through LDPE Film     

A. R. Khan  A. K. Ghorai  R. C. Srivastava  S. R. Singh 《Journal of Agronomy and Crop Science》1997,178(2):73-78

Intensive use of chemical herbicides and pesticides has raised serious concern about their effect on non-target organisms, plants, human bodies and the environment. Hence there is a continuous search for benign, harmless, non-hazardous and eco-friendly technology to control the growth of weeds which compete with crops for water, nutrients, light and space; thus reducing crop yield significantly. An attempt was made to control the weeds through smothering. This controls the weeds by cutting off light from the photosynthetic portion of weed plants by using black polyethylene sheets (LPDE film) which inhibit the top growth. Experiments to control the weeds in a lowland rice field through smothering were conducted in the high rainfall coastal region of eastern India wth eight treatments including smothering and conventional methods like hand/mechanical weeding and herbicides, etc. The treatment of smothering for one week + puddling + transplanting proved to be better than other conventional methods and may replace herbicide and hand/mechanical weeding totally with a better rice yield.  相似文献   

Triterpenoid glycoside from the roots of Terminalia alata     

Srivastava SK  Chouksey BK  Srivastava SD 《Fitoterapia》2001,72(2):191-193

The isolation and NMR spectra of the triterpenoidal glycoside, 2alpha,3beta,19alpha-trihydroxyolean-12-en-28-oic acid 3-O-beta-D-galactopyranosyl- (1-->3)-beta-D-glucopyranoside (1), from the roots of Terminalia alata are reported.  相似文献   

Effect of anthocyanin fractions from selected cultivars of Georgia-grown blueberries on apoptosis and phase II enzymes     

Srivastava A  Akoh CC  Fischer J  Krewer G 《Journal of agricultural and food chemistry》2007,55(8):3180-3185

In recent years, considerable attention has been paid to anthocyanins due to their abilities to inhibit oxidative stress and cell proliferation. The regulations of apoptosis and the phase II enzymes glutathione-S-transferase (GST) and quinone reductase (QR) are other potential mechanisms through which flavonoids such as anthocyanins may prevent cancer. Our study confirmed that anthocyanin fractions from high bush blueberry cultivars increased apoptosis using two different methods: DNA fragmentation and caspase-3 activity. The effect of anthocyanins on the activity of the detoxifying enzymes GST and QR was also determined. Major anthocyanins identified were delphinidin, cyanidin, peonidin, petunidin, and malvidin. In Tifblue and Powderblue cultivars, DNA fragmentation increased at anthocyanin concentrations from 50 to 150 microg/mL, but cells treated with the anthocyanin fraction of Brightblue and Brightwell showed a prominent ladder at 50-100 microg/mL when compared to cells treated with 150 microg/mL. There was a significant difference in the caspase-3 activity (P < 0.05) between the control cells and the cells treated with anthocyanins from all of the cultivars. The response correlated positively with dose. The QR activity was lower in all cells treated with an anthocyanin fraction from Tifblue, Powderblue, Brightblue, and Brightwell cultivars than in control cells (P < 0.05). The activity decreased gradually when treated with increased concentrations of anthocyanin fractions (50-150 microg/mL) in the Tifblue and Powderblue cultivars. The GST activity was lower (P < 0.05) in cells treated with anthocyanin fractions from all of the cultivars and at all concentrations. These results indicated that apoptosis was confirmed in HT-29 cells when treated with anthocyanins from blueberry cultivars at 50-150 microg/mL concentrations, but these same concentrations decrease QR and GST activities rather than induce them.  相似文献   

Composite wound dressing for drug release     

Roli Purwar  Poonam Rajput  Chandra Mohan Srivastava 《Fibers and Polymers》2014,15(7):1422-1428

Present study is focused on the preparation of two layers composite wound dressing for drug release. The outer layer is made of hydrogel which contains of drug and the core layer is made of fabric. The two layers structure of composite dressing is formed by grafting of polyacrylamide-co-acrylic acid hydrogel on cotton fabric using ammonium per sulphate (APS) as chemical initiator and polyethylene glycol (PEG) as crosslinker. The major factors affecting graft copolymerization of hydrogel on cotton fabric are optimized by varying concentration of monomers & initiator, reaction temperature and addition time of crosslinker. Maximum grafting of hydrogel is obtained at 5 % (w/v) APS and 15 % acrylamide/acrylic acid (1:1 w/w ratio) concentration. The FTIR spectra of composite dressing shows characteristics peak of acrylic acid and acrylamide. The composite wound dressing material is loaded with model drug bovine serum albumin (BSA) and drug release behaviour is studied at different pH. The dressing shows drug release in different pH with maximum release of drug in acidic medium.  相似文献   

Comparative sequence analysis of 16S rRNA gene of Pasteurella multocida serogroup B isolates from different animal species     

Dey S  Singh VP  Kumar AA  Sharma B  Srivastava SK  Singh N 《Research in veterinary science》2007,83(1):1-4

The phylogenetic relationships of five isolates of Pasteurella multocida serotype B:2 belonging to buffalo, cattle, pig, sheep and goat were investigated by comparative sequence analysis of 16S rRNA gene. The 1468bp fragment of 16S rRNA gene sequence comparison showed that the isolates of cattle (PM75), pig (PM49) and sheep (PM82) shared 99.9% homology with the buffalo isolate (vaccine strain P52) whereas, the goat isolate (PM86) shared 99.8% homology with the vaccine strain. The 16S rRNA gene sequences of these isolates were also found monophyletic with type B reference strain NCTC 10323 of P. multocida subsp. multocida. The present study indicated the close relationships of haemorrhagic septicaemia causing P. multocida serotype B:2 isolates of buffalo and cattle with other uncommon hosts (pig, sheep and goat).  相似文献   

Cloning and Sequencing of a 21 kDa Outer Membrane Protein Gene of <Emphasis Type="Italic">Leptospira interrogans</Emphasis> serovar Canicola strain Hond Utrecht IV     

Cheema PS  Srivastava SK  Chaudhuri P  Amutha R  Singh S  Sankar M  Thangapandian E 《Veterinary research communications》2007,31(5):521-527

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Identification of RAPD markers linked to the rust (<Emphasis Type="Italic">Uromyces fabae</Emphasis>) resistance gene in pea (<Emphasis Type="Italic">Pisum sativum</Emphasis>)     

S.?Vijayalakshmi  Kusum?Yadav  Chanda?Kushwaha  S.?B.?Sarode  C.?P.?Srivastava  Ramesh?Chand  B.?D.?SinghEmail author 《Euphytica》2005,144(3):265-274

Summary Two RAPD markers linked to gene for resistance (assayed as pustule number cm⁻² leaf area) to rust [Uromyces fabae (Pers.) de Bary] in pea (Pisum sativum L.) were identified using a mapping population of 31 BC₁F₁ [HUVP 1 (HUVP 1 × FC 1] plants, FC 1 being the resistant parent. The analysis of genetics of rust resistance was based on the parents, F₁, F₂, BC₁F₁ and BC₁F₂ generations. Rust resistance in pea is of non-hypersensitive type; it appeared to be governed by a single partially dominant gene for which symbol Ruf is proposed. Further, this trait seems to be affected by some polygenes in addition to the proposed oligogene Ruf. A total of 614 decamer primers were used to survey the parental polymorphism with regard to DNA amplification by polymerase chain reaction. The primers that amplified polymorphic bands present in the resistant parent (FC 1) were used for bulked segregant analysis. Those markers that amplified consistently and differentially in the resistant and susceptible bulks were separately tested with the 31 BC₁F₁ individuals. Two RAPD makers, viz., SC10-82₃₆₀ (primer, GCCGTGAAGT), and SCRI-71₁₀₀₀ (primer, GTGGCGTAGT), flanking the rust resistance gene (Ruf) with a distance of 10.8 cM (0.097 rF and LOD of 5.05) and 24.5 cM (0.194 rF and a LOD of 2.72), respectively, were identified. These RAPD markers were not close enough to Ruf to allow a dependable maker-assisted selection for rust resistance. However, if the two makers flanking Ruf were used together, the effectiveness of MAS would be improved considerably.  相似文献   

Fertility Improvement in Autotetraploids of Pea — Selection for Seed-Set and Disjunction Index     

H. Kumar    V. C. Mercykutty  C. P. Srivastava 《Plant Breeding》1993,110(1):81-83

Four seed-set groups of plants, viz. unselected ‘general’ and selected ‘high’, ‘medium’ and ‘low’ were constituted in C₁ generation from randomly selected autotetraploids of two pea cultivars, T 163 and 5064-S. In C₂ generation, ten plants were selected at random in each of the four groups. Two seeds each from selected autotetraploids were drawn and bulked to make 20 seeds in each of the four groups to raise C₃ generation. Selection resulted in a gradual shift in seed-set, though the magnitude and nature varied with the group and generation. Improvement in the seed-set from C₁ to C₃ generation was associated with the increase in bivalents per cell, disjunction index and total chiasmata. Increase in total chiasmata was mostly due to an increase in proximal ones. Increase in seed-set was reflected in improvement of grain yield per plant.  相似文献   

The electrofocusing composition of the Large and Small Sub-unit polypeptides of Fraction-1-Protein in rice x wheat and rice x sorghum hybrids     

N. K. Srivastava  S. Yoshida 《Euphytica》1990,48(3):219-224

Summary The polypeptide composition of Fraction-1-Protein (F1P) from rice × sorghum, rice × wheat hybrids and their respective parents have been analyzed by a microelectrofocusing method. The large sub-unit (LSU) is composed of three polypeptides and the small sub-unit (SSU) of two polypeptides in rice and sorghum parents and rice × sorghum hybrids. Similarly, LSU is composed of three polypeptides in the rice and wheat parents and rice × wheat hybrids. Two polypeptides occur in the SSU of rice parent and rice × wheat hybrids where as only one polypeptide in the wheat parent. These polypeptides also differ in their isoelectric points. Based on the previous reports of F1P inheritance in hybrids in other crops, F1P analysis of rice × sorghum and rice × wheat hybrids does not seem to be an important marker to identify such intergeneric hybrids. Since this is first such report of F1P inheritance in hybrids between distantly related plants, its implication in different modes of inheritance are discussed.Abbreviations F1P Fraction-1-Protein - IEF Isoelectric focusing - pI Isoelectric points - LSU Large sub-unit - RuBPCase Ribulose 1,5-Bisphosphate Carboxylase-oxygenase - SSU Small sub-unit  相似文献