Protein markers of Marteilia sydneyi infection in Sydney rock oysters, Saccostrea glomerata     

M Simonian  S V Nair  W A O'Connor  D A Raftos 《Journal of fish diseases》2009,32(4):367-375

Marteilia sydneyi is the causative agent of QX disease in Sydney rock oyster, Saccostrea glomerata . It is responsible for disease outbreaks among oysters that occur during summer and can result in up to 95% mortality. QX disease has significantly decreased S. glomerata production in some areas of Australia's eastern seaboard over the past 30 years. Marteilia sydneyi sporulates in the digestive gland of oysters leading to complete disorganization of the infected tissues. The current study used proteomics to identify potential molecular markers of sporulating M. sydneyi infection during a field trial undertaken in the Georges River, Sydney, between December 2006 and May 2007. Early stages of M. sydneyi infection were detected by polymerase chain reaction, whilst cytological examination was used to identify sporulating M. sydneyi in the gut. Protein expression in oyster haemolymph was assessed during the M. sydneyi infection period by two dimensional electrophoresis. Proteome maps identified significant differences in the expression of four proteins in oysters with sporulating M. sydneyi infections.  相似文献   

Biochemical and Microbiological Assessment of Crucifix Crab (Charybdis feriatus) Stored at 4°C     

Thottingal K. Anupama  Sundarambal J. Laly  Kesavan Nair Ashok Kumar  Thazhakot V. Sankar  George Ninan 《Journal Of Aquatic Food Product Technology》2018,27(4):531-541

Charybdis feriatus is a highly prized crab in the local and international markets of East Asian countries. In local markets, crabs are sold live, iced, or refrigerated at 2°C – 4°C. The present study was carried out to determine the shelf life of whole crab stored at 4°C for 192 h using a set of biochemical, microbiological, and sensorial parameters. Biochemical indicators such as the total volatile base nitrogen (TVB-N) and trimethylamine nitrogen (TMA-N) increased significantly during storage and within an acceptable limit up to 144 h. Regarding the biogenic amines, cadaverine and spermidine increased significantly (p < 0.05) during the storage period. Among them, cadaverine could be proposed as a useful spoilage indicator for this crab species. The mesophilic and psychotropic bacterial count exceeded the limit of acceptance after 144 h of storage. Sensory attributes were gradually diminished with the storage time. Sensory scores were found to correlate well with both mesophiles and psychrotrophs. Based on the results of this study, the meat quality of Charybdis feriatus can be maintained up to 144 h when properly stored at a temperature of 4°C ± 1°C.  相似文献   

High-temperature-tolerant mungbean (Vigna radiata L.) lines produce better yields when exposed to higher CO2 levels     

H. Bindumadhava  L. Sharma  R. M. Nair  H. Nayyar  J.J Riley  W Easdown 《Journal of Crop Improvement》2018,32(3):418-430

Increasing global air temperatures, along with rising CO₂ levels, are causing concerns about reducing available freshwater resources and altering cropping patterns. They may influence overall growth and production pattern of crop plants. These likely changes would become major limiting factors for future sustainable food production largely in the tropics and subtropics. Thus, understanding physiological responses hold the key to determining the functional relationship between the environment and crop performance. We explore here the impact of rising CO₂ on the growth and yield traits of a few selected high-temperature (HT)-tolerant mungbean lines, which we earlier screened for HT tolerance using a physiological assay under managed growth conditions. The HT-tolerant lines grown under elevated CO₂ levels (550 and 700 μL L^?1) showed a considerable improvement in growth rates (13.5%, 67.8%, and 46.5% in plant height, leaf area, and total dry matter, respectively) and pod and seed yield (48.7% and 31.7%, respectively), compared to local checks under the same environments. Interestingly, the symptoms of accelerated pod maturity were also observed in most of these lines. The outcome of the study would undoubtedly open up opportunities for increased yield potentials of legumes under the conditions of the warming climate and elevated levels of carbon dioxide.  相似文献   

Cloning and characterisation of the ahpA gene of Pasteurella multocida serogroup b:2 (strain P52): short communication     

Rani SS  Chaturvedi VK  Gupta PK  Joseph S  Nair BC  Pandey KD 《Acta veterinaria Hungarica》2006,54(4):449-453

Pasteurella multocida B:2 is responsible for haemorrhagic septicaemia in cattle and buffaloes, causing severe economic losses in the developing countries. In the present study, the ahpA gene of P. multocida B:2 (P52) was cloned, sequenced and compared with the previously reported ahpA gene sequence in P. multocida A:1, which is responsible for its haemolytic phenotype. E. coli DH5a cells were further transformed with recombinant plasmid carrying the ahpA gene from P. multocida B:2 (P52) but SDS-PAGE analysis failed to show the expression of haemolysin protein. Slight haemolysis was albeit observed in horse blood agar plates streaked with recombinant E. coli carrying the ahpA gene. Our study indicates that there is 99.6% similarity and 0.4% divergence between ahpA gene of P. multocida B:2 (P52) and P. multocida A: 1, while membrane topology analysis has predicted that ahpA is an inner membrane protein with two strong hydrophobic regions at the N and C terminals. The presence of significant homology in ahpA sequence in A: 1 and B:2 perhaps suggests a common mechanism of pathogenesis in different species of animals.  相似文献   

Active root distribution pattern of <Emphasis Type="Italic">Hevea brasiliensis</Emphasis> determined by radioassay of latex serum     

Sherin George  P. R. Suresh  P. A. Wahid  Ramesh B. Nair  K. I. Punnoose 《Agroforestry Systems》2009,76(2):275-281

The active root distribution pattern of mature rubber (Hevea brasiliensis Muell. Arg.) up to a lateral distance of 250 cm from the tree and to a soil depth of 90 cm was studied in an oxisol by employing ³²P soil injection technique in Kerala, the state which accounts for 83% of rubber cultivation in India. The trees were aged 18 years and grown at a spacing of 4.9 × 4.9 m. The extent of absorption of applied ³²P by the tree from various placements was assessed by radio assay of leaf and latex serum. Latex serum registered higher counts and variability was less compared to leaf indicating the suitability of latex serum as a potential source for radio assay for ³²P studies in rubber. The results revealed that rubber is a surface feeder with 55% of the root activity confining to the top 10 cm of soil layer. Root activity declined with increasing depths and the concentration of physiologically active roots at 90 cm depth was only 6%. A more or less uniform distribution of root activity was noticed with respect to lateral distance indicating more extensive spread of lateral roots. Concentration of physiologically active roots in the surface layer suggests the possibility for competition under intercropped situation in mature plantations.  相似文献   

Comparative analysis of diversity based on morpho-agronomic traits and microsatellite markers in common bean     

Vipin Kumar  Shailendra Sharma  Amit Kumar Sharma  Shiveta Sharma  K. Venkataramana Bhat 《Euphytica》2009,170(3):249-262

Morpho-agronomic traits and microsatellite markers were used to survey genetic diversity in 115 common bean genotypes that included 70 Indian landraces, 24 released varieties and 21 exotic accessions. Twelve morpho-agronomic traits, namely, days to 50% flowering, leaflet length, leaflet width, pod length, pod width, number of pods per plant, days to maturity, seed length, seed width, number of seeds per pod, 100 seed weight and seed yield per plant were studied. Field data of two consecutive years were subjected to multivariate analysis as proposed by Mahalanobis’s D²-statistics, Tochers method of clustering and combined analysis of variance. Seventeen microsatellite markers were also used to examine genetic diversity at molecular level that showed polymorphic information content (PIC) in the range of 0.00–0.684. Dendrograms based on Euclidean distances and UPGMA analysis showed the presence of majority of released varieties into single cluster, which pointed toward their low genetic base in comparison to indigenous landraces and exotic germplasm. Significant correlation existed between morphological genetic distance and microsatellite genetic distance tested by Mantel test (r = 0.876).  相似文献   

Aroma profiles of the curry leaf, Murraya koenigii (L.) Spreng. chemotypes: Variability in north India during the year     

Ram Swaroop Verma  Rajendra Chandra PadaliaVinod Arya  Amit Chauhan 《Industrial Crops and Products》2012,36(1):343-348

Murraya koenigii (L.) Spreng. (Rutaceae) is characterized by a large chemical intraspecific variability among the land races. This fact makes it difficult to detect real changes occurring in their essential oil composition during annual cycle. Based on this, variations of essential oil yield and composition in two chemotypes (‘A’ and ‘B’) of M. koenigii were assessed in spring, summer, rainy, autumn and winter seasons under foot hill conditions of northern India. The essential oil yield ranged from 0.15% to 0.18% in chemotype ‘A’, while it varied from 0.12% to 0.14% in chemotype ‘B’. Essential oils of both chemotypes from different seasons were analysed by gas chromatography (GC-FID) and gas chromatography-mass spectrometry (GC-MS). A total of fifty-eight constituents representing 93.7-98.8% of chemotype ‘A’ and fifty-six constituents forming 96.1-98.7% of the total composition of chemotype ‘B’ were identified. Chemotype ‘A’ was characterized by higher percentages of α-pinene (34.6-41.9%), sabinene (26.1-36.1%), (E)-caryophyllene (2.4-5.4%) and terpinen-4-ol (1.5-5.3%), whereas chemotype ‘B’ was dominated by higher amount of α-pinene (52.7-65.3%), β-pinene (10.7-12.9%), (E)-caryophyllene (3.1-10.3%) and limonene (5.1-7.8%). Comparative results showed considerable variations in the essential oil composition of both chemotypes due to season of collection. Present study concluded that the M. koenigii leaves of desired quality may be obtained by selecting suitable chemotype and season.  相似文献   

Concomitant production of lipase, protease and enterocin by Enterococcus faecium NCIM5363 and Enterococcus durans NCIM5427 isolated from fish processing waste     

Vrinda Ramakrishnan  Bijinu Balakrishnan  Amit Kumar Rai  Bhaskar Narayan  Prakash M Halami 《International Aquatic Research》2012,4(1):1-14

Enterococci are widely distributed in the environment ranging from foods to humans and are gaining industrial importance due to their technological traits. In the present study, enterococci (Enterococcus faecium NCIM5363 (EF-63) and Enterococcus durans NCIM5427 (ED-27)) which are native to fish processing waste with an ability to produce lipase, protease and enterocin concomitantly were characterised. Lipase assay was performed by titrimetry and protease activity and was estimated using haemoglobin and casein as substrates in the presence of buffers at acidic, basic and neutral pH. Furthermore, enterocin produced by the isolates was characterised. Enterocin was also checked for its stability at different pH, temperature and proteolytic enzymes. Lipase production was found to be 22 and 10 U/ml in the absence of tributryin and increased to 40 and 24 U/ml in its presence for EF-63 and ED-27, respectively, indicating that the lipase produced is substrate dependent. Protease production was confirmed by protease assay, and the protease produced showed more affinity towards the acidic substrate. Enterocin produced was stable at low pH (2 to 3) and high temperature (121°C, 15 min) and had a molecular weight of approximately 6 kDa. It exhibited antibacterial activity against both Gram-positive and Gram-negative food-borne pathogens. Proteinase K inactivated enterocin completely, whereas trypsin did not. Novelty of this work lies in the immense industrial importance these cultures hold as they are capable of producing lipase, protease and enterocin apart from being useful in recovering proteins and lipids from fish processing wastes.  相似文献   

Identification of PCR-based DNA Marker Linked to High Phytase Level of Wheat     

Amit Vashishth  Sewa Ram  Vikas Beniwal 《Journal of Crop Science and Biotechnology》2018,21(1):83-88

The phytase is a key enzyme to hydrolyze phytic acid present in wheat grains and improves the bio-availability of micronutrients in monogastric animals. Phytase trait being contributed by specific regions of the genome requires identification of these regions, using suitable molecular markers. Hence, in the present investigation we attempted to develop a PCR-based marker that detects the phytase level in wheat. Six sets of PCR primers were designed on the basis of nucleotides sequence variation found in the sequence of both varieties. Out of six set of primers, one set amplified two different sized bands, i.e. 334 bp and 295 in two wheat cultivars C-306 (low phytase) and DBW 17 (high phytase), respectively. It exhibited a polymorphic banding pattern with length polymorphism and clearly separating low and high phytase genotypes. The primer set was also used for PCR of 46 synthetic hexaploids and 46 release varieties of wheat to validate the developed markers. Association among identified markers and phytase activity was found to be at 99.9% confidence level based on Fisher’s exact test (F-test). Therefore, this PCR primer set will be useful to select the wheat germplasm having high phytase levels and also in wheat breeding programs aimed at improving phytase levels in bread wheat cultivars.  相似文献   

Removal of Dyes Using Graphene-Based Composites: a Review     

Ishani Khurana  Amit Saxena  Bharti  Jitender M. Khurana  Pramod Kumar Rai 《Water, air, and soil pollution》2017,228(5):180

Water contamination has reached an alarming state due to industrialization and urbanization and has become a worldwide issue. Dyes contaminate water and are addressed extensively by researchers. Various technologies and materials have been developed for the treatment of contaminated water. Among them, adsorption has attracted great attention due to its ease and cost-effective nature. In recent years, graphene-based composites have shown great potential for the removal of contaminants from water. The literature reveals the usefulness of composites of graphene with metal oxides, carbon derivatives, metal hybrids and polymers for the removal of organic dyes from contaminated water. In this review, efforts have been made to compile the studies on the removal of cationic and anionic dyes from water using graphene-based composites.  相似文献