Development of EST-SSR markers of Ipomoea nil     

Tong Ly  Hiroyuki Fukuoka  Asami Otaka  Atsushi Hoshino  Shigeru Iida  Eiji Nitasaka  Nobuyoshi Watanabe  Tsutomu Kuboyama 《Breeding Science》2012,62(1):99-104

Although Japanese morning glory (Ipomoea nil (L.) Roth.) has been used intensively for genetic studies, DNA markers have not been developed in Ipomoea nil sufficient to cover all chromosomes. Therefore, we conducted microsatellite (simple sequence repeats, SSR) marker development in I. nil for future genetic studies. From 92,662 expressed sequence tag (EST) sequences, 514 unique microsatellite-containing ESTs were identified. Primer pairs were designed automatically in 326 SSRs. Of 150 SSRs examined, 75 showed polymorphisms among strains. A phenogram based on the SSR genotypes revealed the genetic relation among seven Japanese morning glories from five different regions of the world and an ivyleaf morning glory (I. hederacea Jacq.). The developed SSR markers might be applicable for genetic studies of morning glories and their relatives.  相似文献   

Practical capability of a DNA pool‐based genome‐wide association study using BovineSNP50 array in a cattle population     

Yoshinobu UEMOTO  Nanae SASAGO  Tsuyoshi ABE  Hideki OKADA  Hitomi MARUOKA  Hiroaki NAKAJIMA  Noriaki SHOJI  Shin MARUYAMA  Naohiko KOBAYASHI  Hideyuki MANNEN  Eiji KOBAYASHI 《Animal Science Journal》2012,83(11):719-726

Genome‐wide association mapping for complex traits in cattle populations is a powerful, but expensive, selection tool. The DNA pooling technique can potentially reduce the cost of genome‐wide association studies. However, in DNA pooling design, the additional variance generated by pooling‐specific errors must be taken into account. Therefore, this study aimed to investigate factors such as: (i) the accuracy of allele frequency estimation; (ii) the magnitude of errors in pooling construction and in the array; and (iii) the effect of the number of replicate arrays on P‐values estimated by a genome‐wide association study. Results showed that the Illumina correction method is the most effective method to correct the allele frequency estimation; pooling errors, especially array variance, should be taken into account in DNA pooling design; and the risk of a type I error can be reduced by using at least two replicate arrays. These results indicate the practical capability and cost‐effectiveness of pool‐based genome‐wide association studies using the BovineSNP50 array in a cattle population.  相似文献   

Evaluation of Recombinant Forms of the Shiga Toxin Variant Stx2eB Subunit and Non-Toxic Mutant Stx2e as Vaccine Candidates against Porcine Edema Disease     

Toshio SATO  Takeshi MATSUI  Eiji TAKITA  Yumiko KADOYAMA  Sou-Ichi MAKINO  Ko KATO  Kazutoshi SAWADA  Takashi HAMABATA 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2013,75(10):1309-1315

  相似文献   

Characterization of canine filaggrin: gene structure and protein expression in dog skin     

Satoko Kanda  Takashi Sasaki  Aiko Shiohama  Koji Nishifuji  Masayuki Amagai  Toshiroh Iwasaki  Jun Kudoh 《Veterinary dermatology》2013,24(1):25-e7

Background – Filaggrin (FLG) is a key protein for skin barrier formation and hydration of the stratum corneum. In humans, a strong association between FLG gene mutations and atopic dermatitis has been reported. Although similar pathogenesis and clinical manifestation have been argued in canine atopic dermatitis, our understanding of canine FLG is limited. Hypothesis/Objectives – The aim of this study was to determine the structure of the canine FLG gene and to raise anti‐dog FLG antibodies, which will be useful to detect FLG protein in dog skin. Methods – The structure of the canine FLG gene was determined by analysing the publicly available canine genome DNA sequence. Polyclonal anti‐dog FLG antibodies were raised based on the canine FLG sequence analysis and used for defining the FLG expression pattern in dog skin by western blotting and immunohistochemistry. Results – Genomic DNA sequence analysis revealed that canine FLG contained four units of repeated sequences corresponding to FLG monomer protein. Western blots probed with anti‐dog FLG monomer detected two bands at 59 and 54 kDa, which were estimated sizes. The results of immunohistochemistry showed that canine FLG was expressed in the stratum granulosum of the epidermis as a granular staining pattern in the cytoplasmic region. Conclusions and clinical importance – This study revealed the unique gene structure of canine FLG that results in production of FLG monomers larger than those of humans or mice. The anti‐dog FLG antibodies raised in this study identified FLG in dog skin. These antibodies will enable us to screen FLG‐deficient dogs with canine atopic dermatitis or ichthyosis.  相似文献   

Transcription profile of chemokine receptors,cytokines and cytotoxic markers in peripheral blood of dogs with epitheliotropic cutaneous lymphoma     

Naoki Chimura  Aki Iio  Eiji Ozaki  Takashi Mori  Yusuke Ito  Nobuo Murayama  Masahiko Nagata  Kaori Ide  Koji Nishifuji  Hiroaki Kamishina  Sadatoshi Maeda 《Veterinary dermatology》2013,24(6):628-e155

  相似文献   

Relationships between body size and secondary sexual characters,and sperm characters in male Dolly Varden char (Salvelinus malma)          下载免费PDF全文

Toshiaki Yamamoto  Noritaka Hirohashi  Eiji Fujiwara  Tatsuya Suzuki  Hatsuna Maruta  Hirotake Omiya  Shigeru Kitanishi 《Ecology of Freshwater Fish》2017,26(3):397-402

In Salmonidae, subordinate males are exposed to higher risks of sperm competition than dominant males and thus are expected to improve the sperm characteristics (sperm concentrations, sperm velocity and sperm longevity). In this study, we investigated the relationships between body size and secondary sexual characters (breeding colour, hump height and snout length), and sperm characteristics of one‐year‐old (newly matured) Dolly Varden char. Small males displayed higher sperm concentrations than large males. Moreover, males with dull breeding colours, but not with lesser snout length and hump height, displayed an increased sperm velocity compared to males with bright colours, suggesting a trade‐off between sperm quantity and the investment in breeding colour. In addition, sperm longevity decreased as sperm swimming velocity increased. These findings indicate that small males with dull breeding colours improve the quantity and quality of their sperm to a great extent to enhance their chances of reproductive success.  相似文献   

Relationship between resistance to vole browsing and content of ether extract in the bark of larch species and hybrids     

Eiji Hayashi  Kazuya Iizuka  Shin-ichi Sukeno  Kohzo Kohno 《Journal of Forest Research》1998,3(2):119-122

We determined the survival rate of tree families produced by the intra- and interspecific crossing of larch species damaged by browsing of vole (Clethrionomys rufocanus bedfordiae Thomas) and the contents of ether extracts (EE) in their bark. The average survival ofLarix gmelini var.japonica Pilg. (L. gmelini)×L. gmelini (G×G) was highest, followed by the hybridL. gmelini×L. leptolepis Gordon (G×L). The families of the hybrid G×L, which is considered suitable for silviculture in Hokkaido, Japan, showed significant differences in survival rates, suggesting that it is possible to produce improved varieties of the hybrid which are more resistant to vole browsing. The EE contents of the bark were under strong hereditary control, and the rank of the EE content among the various families hardly fluctuated between the location of the test fields. The correlation coefficient between the survival rates and the EE contents was highly significant (r=0.89,n=24,p<0.01), indicating that the EE content in the bark may be used as a possible index of resistance or susceptibility to vole browsing in larch plantations. A part of this report was presented at the 106th Annual Meeting of the Japanese Forestry Society, at Sapporo, April, 1995.  相似文献   

Wireless monitoring of blood glucose levels in flatfish with a needle biosensor     

Hideaki Endo  Eiji Takahashi  Masataka Murata  Hitoshi Ohnuki  Huifeng Ren  Wakako Tsugawa  Koji Sode 《Fisheries Science》2010,76(4):687-694

A wireless biosensor system was developed for the continuous measurement of blood glucose levels in flatfish. The biosensor was implanted in the interstitial fluid under the scleral surface of the eyeball (EISF) to investigate the relationship between EISF and blood glucose levels. EISF glucose levels were found to be correlated with those in the blood and to be approximately the same as blood glucose levels in the range of 7–25 mg dl⁻¹. A needle-type biosensor was prepared for the continuous EISF glucose monitoring in flatfish. A working electrode was constructed using platinum iridium wire, and glucose oxidase was immobilized to the electrode. The biosensor was inserted into the EISF of flatfish for sensor implantation. A 650-mV potential (vs. Ag/AgCl) was applied by a wireless potentiostat to the working electrode for the amperometric glucose measurement. We investigated whether glucose in the EISF can be determined in vivo. The estimated glucose levels using a one-point calibration method were correlated with actual blood glucose levels. In conclusion, using a wireless biosensor system, we were able to monitor blood glucose levels in flatfish under free-swimming conditions for 16 h.  相似文献   

Observation of three‐dimensional flow structures and effluent transport around fish cages using a towed ADCP and free‐fall multi‐parameter profiler     

Hidekatsu Yamazaki  Wataru Aoyama  Eiji Masunaga  Mamoru Tanaka 《Aquaculture Research》2019,50(4):1107-1116

A field campaign was conducted around salmon cages, using a combination of a towed ADCP and a free‐fall multi‐parameter profiler, in order to investigate flow structures and the possible distribution of effluent materials. Two transect observations showed that hydrographic conditions changed dramatically within 5 days, from highly stratified open water conditions to weak stratification. Three‐dimensional observation revealed that flow was blocked behind the cages and that the blockage was reduced as the distance from the cages increased. The flow speed was positively correlated with the intensity of the backscattering signal. The R² value was high immediately behind the cages and decreased with distance from the cages. The flow time series behind the cages exhibited a k^–2 power law spectrum that was consistent with a typical internal wave spectrum. This suggests that eddies shed from the cages were highly influenced by stratification. We estimated the rate of kinetic energy dissipation, , from YODA Profiler data based on the Thorpe scale approach. We also estimated the eddy diffusivity coefficient, . Both and followed a lognormal probability density function. The mean was consistent with a one‐dimensional diffusion model assessed from the R² values of flow speed and backscatter intensity.  相似文献   

Estimation of temporal changes in the growth of green turtles <Emphasis Type="Italic">Chelonia mydas</Emphasis> in waters around the Ogasawara Islands     

Eiji Tanaka 《Fisheries Science》2009,75(3):629-639

Biological and life-cycle information is essential to any fisheries management program. We have investigated temporal changes in growth parameters in the von Bertalanffy growth curve for green turtles, Chelonia mydas, in waters around the Ogasawara Islands. The variance model of individual variability of growth used in our study was one derived from the stochastic differential equation with the white noise of constant intensity. Maximum likelihood estimates of the parameters were made using the data of 102 recovery records of tagging experiments from 1974 to 1995. The estimations were carried out for each of two models of linear and sudden changes in the parameters, and the best model was selected using Akaike's information criterion. The selected model was that all of the parameters excepting asymptotic straight carapace length were linear functions of year and that the asymptotic length was constant over the years. The estimated values of the growth coefficient in 1974 and 1995 were 0.0317 and 0.192 per year, respectively, and the estimated value of the asymptotic straight carapace length was 97.2 cm. Implications of the results and future issues to be resolved in near future are discussed.  相似文献