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Molecular characterization of low pathogenic avian influenza viruses, isolated from food products imported into Singapore 总被引：1，自引：0，他引：1
Dawn Su-Yin Yeo Sock-Hoon Ng Chin-Wen Liaw Ley-Moy Ng Eugene Jing-Hui Wee Elizabeth Ai-Sim Lim Shirely Lay-Kheng Seah Wai-Kwan Wong Chee-Wee Lim Richard J. Sugrue Boon-Huan Tan 《Veterinary microbiology》2009,138(3-4):304-317
We have completed the genetic characterization of all eight gene segments for four low pathogenic avian influenza (LPAI) viruses. The objective of this study was to detect the presence of novel signatures that may serve as early warning indicators of the conversion of LPAI viruses to high pathogenic avian influenza (HPAI) viruses. This study included three H5N2 and one H5N3 viruses that were isolated from live poultry imported into Singapore as part of the national avian influenza virus (AIV) surveillance program. Based on the molecular criterion of the World Organisation for Animal Health (OIE), sequence analysis with the translated amino acid (aa) sequence of the hemagglutinin (HA) gene revealed the absence of multibasic aa at the HA cleavage site, identifying all four virus isolates as LPAI. Detailed phylogenetic tree analyses using the HA and neuraminidase (NA) genes clustered these isolates in the Eurasian H5 lineage, but away from the HPAI H5 subtypes. This analysis further revealed that the internal genes clustered to different avian and swine subtypes, suggesting that the four isolates may possibly share their ancestry with these different influenza subtypes. Our results suggest that the four LPAI isolates in this study contained mainly avian signatures, and the phylogenetic tree for the internal genes further suggests the potential for reassortment with other different circulating avian subtypes. This is the first comprehensive report on the genetic characterization of LPAI H5N2/3 viruses isolated in South-East Asia. 相似文献
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Matthew Stachowiak Shirely E. Clark Rebekah E. Templin Katherine H. Baker 《Water, air, and soil pollution》2010,211(1-4):251-259
We examined the impact of the effluent discharged from a freshwater (trout and related species) fish hatchery on the presence of antibiotic-resistant microorganisms in a small stream. There had been no documented use of antibiotics in the hatchery for at least 6 months prior to our study, although a variety of biocides were employed routinely for cleaning. Heterotrophic bacteria and Escherichia coli were isolated from both water column and sediment samples at sites above and below the discharge of the hatchery effluent as well as from the hatchery effluent itself. Randomly chosen isolates (≥96 isolates per site) were tested for their resistance to ampicillin, cephalexin, erythromycin, and tetracycline. Resistance to at least one antibiotic was found in greater than 30% of both the heterotrophic isolates and the E. coli isolates from each of the sites. There were no significant differences among the sites in the proportion of the heterotrophic isolates resistant to any specific antibiotic. The proportion of E. coli isolates resistant to tetracycline in the hatchery effluent and in both the downstream water and sediment samples was significantly higher than in either the upstream water or sediment. These results support the possibility of the hatchery as a source of tetracycline-resistant microorganisms even in the absence of recent use of this antibiotic. 相似文献
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Zach Bohannan Raghavendra Sumanth Pudupakam Jamin Koo Harrison Horwitz Josephine Tsang Amanda Polley Enyang James Han Elmer Fernandez Stanley Park Deanna Swartzfager Nicholas Seah Xi Qi Chantal Tu Wendi Velando Rankin Douglas H. Thamm Hye‐Ryeon Lee Sungwon Lim 《Veterinary and comparative oncology》2021,19(1):160-171
We report a precision medicine platform that evaluates the probability of chemotherapy drug efficacy for canine lymphoma by combining ex vivo chemosensitivity and immunophenotyping assays with computational modelling. We isolated live cancer cells from fresh fine needle aspirates of affected lymph nodes and collected post‐treatment clinical responses in 261 canine lymphoma patients scheduled to receive at least 1 of 5 common chemotherapy agents (doxorubicin, vincristine, cyclophosphamide, lomustine and rabacfosadine). We used flow cytometry analysis for immunophenotyping and ex vivo chemosensitivity testing. For each drug, 70% of treated patients were randomly selected to train a random forest model to predict the probability of positive Veterinary Cooperative Oncology Group (VCOG) clinical response based on input variables including antigen expression profiles and treatment sensitivity readouts for each patient's cancer cells. The remaining 30% of patients were used to test model performance. Most models showed a test set ROC‐AUC > 0.65, and all models had overall ROC‐AUC > 0.95. Predicted response scores significantly distinguished (P < .001) positive responses from negative responses in B‐cell and T‐cell disease and newly diagnosed and relapsed patients. Patient groups with predicted response scores >50% showed a statistically significant reduction (log‐rank P < .05) in time to complete response when compared to the groups with scores <50%. The computational models developed in this study enabled the conversion of ex vivo cell‐based chemosensitivity assay results into a predicted probability of in vivo therapeutic efficacy, which may help improve treatment outcomes of individual canine lymphoma patients by providing predictive estimates of positive treatment response. 相似文献
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Fook Yee Chye Pei Wan Ooi Seah Young Ng Mohd Rosni Sulaiman 《Journal Of Aquatic Food Product Technology》2018,27(2):144-164
Seaweeds are valuable sources of biologically active compounds that could be used as ingredients for pharmacological applications. Industrial fermentation using microorganisms provides a wide array of fermented foods and functional compounds with excellent health benefits. These fermentation-derived natural compounds have the potential to be applied as nutraceuticals and functional foods. Therefore, this paper presents an overview of the fermentation of sustainable seaweeds in producing valuable components, including anticoagulant, antioxidant, antimicrobial, anti-inflammatory, and anticancer. Fermentation-derived compounds are expected to receive more attention due to their environmentally friendly processing as well as consumer desire for natural foods. 相似文献
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Localization of linear B-cell epitopes on infectious bronchitis virus nucleocapsid protein 总被引：23，自引：0，他引：23
The nucleocapsid (N) protein of many viruses is highly conserved, immunogenic, and abundantly expressed during infection. These features make it a suitable candidate for diagnostic applications. The nucleocapsid protein of infectious bronchitis virus (IBV) was dissected into 12 fragments and expressed in Escherichia coli. Sera against Australia T, China Ch5, Singapore P4, USA M41 and China T3 isolates were used to study the conservation and localization of the antigenic region on the IBV nucleocapsid protein. Our results show linear immunodominant epitopes, which were found in three fragments covering amino acid residues 175-241, 310-370 and 360-409. 相似文献
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