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稻瘟病菌致病性变异研究现状(述评) 总被引：1，自引：0，他引：1
陶家凤 《四川农业大学学报》1995,13(4):518-521
本文扼要叙述了稻瘟病菌致病性变异的可能途径，还介绍了在变异问题上两种对立的观点，最后作者对水稻杂交有种工作提出了建议。 相似文献
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鲤与生长性状相关的EST-SSRs标记筛选 总被引：4，自引：0，他引：4
以大头鲤(Cyprinus pellegrini Tchang)(母本)与荷包红鲤(Cyprinus carpio wuyuanensis)抗寒品系(父本)杂交产生的F1作为亲本,以其自交F2作为分离群体,结合"拟测交"策略,用EST-SSRs标记对其中92个个体进行基因型检测.利用Windows Map Manager 2.0的标记回归法对符合拟测交分离的70个EST-SSRs标记进行单标记回归分析,检测出8个与鲤体长、体高、体厚性状相关的标记.对同一标记不同基因型个体间生长性状进行显著性比较,通过t检验,找到与生长性状相关的基因型.将上述8个EST序列与GenBank数据库进行BLAST比对,有3条EST序列与蛋白库中已知功能的序列高度同源.其中HLJE225与编码斑马鱼(J9enio rerio)冷诱导基因RNA结合蛋白的基因同源性水平高达97%,HLJE222与编码斑马鱼DAZ相关蛋白1基因同源性水平也高达97%,HLJE599与编码斑点叉尾鲴(Ictalurus punctatus)核糖体蛋白L6基因的同源水平为87%.本研究鉴定的与鲤生长性状相关的功能基因及有利用价值的基因型,为鲤重要生长性状的QTL(数量性状基闪座)定位和分子标记辅助育种提供了一定的依据.[中国水产科学,2009,16(1):15-22] 相似文献
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A.M.A.M.Z. Siddiki Jonathan M. Wastling 《Journal of veterinary science (Suw?n-si, Korea)》2009,10(3):203-210
Cryptosporidium (C.) spp. are important zoonotic parasites causing widespread diarrhoeal disease in man and animals. The recent release of the complete genome sequences for C. parvum and C. hominis has facilitated the comprehensive global proteome analysis of these opportunistic pathogens. The well-known approach for mass spectrometry (MS) based data analysis using the BLAST tool (MS BLAST) is a database search protocol for identifying unknown proteins by sequence similarity to homologous proteins using peptide sequences produced by mass spectrometry. We have used several complementary approaches to explore the global sporozoite proteome of C. parvum with available proteomic tools. To optimize the output of the MS data, a sequence similarity-based MS BLAST strategy was employed for bioinformatic analysis. Most significantly, almost all the constituents of glycolysis and several mitochondrion-related proteins were identified. In addition, many hypothetical Cryptosporidium proteins were validated by the identification of their constituent peptides. The MS BLAST approach was found to be useful during the study and could provide valuable information towards a complete understanding of the unique biology of Cryptosporidium. 相似文献
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[目的]对新疆霍城县大西沟采集的两种形异羊肚菌(XJURML4和XJURML5)进行分类鉴定.[方法]用真菌专一引物ITS1f和ITS4扩增两菌ITS区并进行序列分析.[结果]XJURML4 ITS片段1 130 bp( EU086775),XJURML5 ITS片段1 127 bp(EU086776).两菌的ITS2区100;相似,而ITS1区仅有4 bp差异.BLAST比对测序结果发现XJURML4和XJURML5与近缘种宽圆羊肚菌(MorcheLLa esculenta (L.:Fr.)Pers.var.rotunda Pers.:Fr.)的同源性为99.28;和98.65;;NJ法构建进化树分析ITS序列,两菌也跟宽圆羊肚菌类聚在一起.随机引物OPA3进行RAPD扩增,共产生出六条带,二条相同,剩余四条为多态性条带,表明两菌基因组上也有差异.[结论]ITS区序列和进化树分析、OPA3 - RAPD标记技术均表明两菌是宽圆羊肚菌种内的新变种,而与传统形态学鉴定结果不一致. 相似文献
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Shinji Sasaki Eiji Muraki Yoshinobu Inoue Ryouhei Suezawa Hideki Nikadori Yuuichi Yoshida Shouta Nariai Ryoya Hideshima Shiyunsuke Moriwaki Ryotaro Nakashima Katsuo Uchiyama Kanako Yoshinari Masayuki Takeda Takatoshi Kojima 《Animal Science Journal》2019,90(12):1503-1509
Single nucleotide polymorphism (SNP) arrays are widely used for genetic and genomic analyses in cattle breeding; thus, data derived from SNP arrays have accumulated on a large scale nationwide. Commercial SNP arrays contain a considerable number of unassigned SNPs on the chromosome/position on the genome; these SNPs are excluded in subsequent analyses. Notably, the position‐unassigned SNPs, or “buried SNPs” include some of the markers associated with genetic disease. In this study, we identified the position of buried SNPs using the Basic Local Alignment Search Tool against the surrounding sequences and characterized the relationship between SNPs and genetic diseases in Online Mendelian Inheritance in Animals based on the genomic position. We determined the position of 285 buried SNPs on the genome and surveyed the genotype and allele frequencies of these SNPs in 5,955 individual Japanese Black cattle. Eleven SNPs associated with genetic disease, which contained five buried SNPs, were found in the population with the risk allele frequency ranging from 0.00008396 to 0.46. These results indicate that buried SNPs in the bovine SNP array can be utilized to identify associations with genetic disorders from large scale accumulated SNP genotype data in Japanese Black cattle. 相似文献
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microRNA（miRNA）是一类长度为18～25 nt的单链小分子RNA。它可以调控基因的表达调控。通过与目标mRNA的特定位点的结合,从而抑制蛋白质的翻译或诱导该mRNA的降解。目前鱼类miRNA方面以斑马鱼miRNA的研究较多。为发掘另一种鱼类模式生物——青鳉鱼（Oryzias latipes,medeka）的miRNA,利用BLAST同源搜索方法与比较基因组学方法,并根据成熟miRNA的序列保守性以及miRNA前体（premiRNA）的二级结构的特征,对该模式生物的pre-miRNA进行了计算鉴定与分析。通过与miRBase19中已经发布的miRNA进行比较,在青鳉鱼基因组中共找到了56条新序列。设定miRNA基因间距的阈值为5000nt,新发现的与已知的pre-miRNA共形成31个基因簇。同时,这56条新发现的pre-miRNA可以划分到33个已知的基因家族中,并分析了新发现的、保守miRNA的靶标与功能。 相似文献
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【目的】分离和克隆苎麻果胶合成关键酶GalAT基因部分序列,了解其在不同组织部位的表达情况。【方法】采用简并引物RT-PCR法克隆基因,用生物信息学方法对获得的cDNA序列及推定氨基酸序列进行分析,并用荧光实时定量PCR法研究GalAT基因在不同组织中的表达。【结果】克隆了986 bp的GalAT基因部分序列（GenBank注册号：EU131377）,可编码328个连续的氨基酸序列;核苷酸序列和推定的氨基酸序列与拟南芥的Galacturonosyltransferase 4同源性最高,分别为77%和83%;推定的氨基酸序列与拟南芥的Galacturonosyltransferase 4可聚为一类;GalAT基因在苎麻各个组织中都有表达,其中根部的GalAT表达量占大部分。【结论】确定所获得的序列是GalAT基因的cDNA序列;GalAT表达量为根部＞叶片＞韧皮部＞或≈木质部, 在根部的表达量占优势。 相似文献
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蜡状芽胞杆菌群16S rDNA分析 总被引：1，自引：0，他引：1
蜡状芽胞杆菌群主要包括炭疽芽胞杆菌(Bacillus anthracis)、蜡状芽胞杆菌(Bacillus cereus)、苏云金芽胞杆菌(Bacillus thuringiensis).GenBank已有这个群的8个菌株完成了全基因组序列测定.对这8株蜡状芽胞杆菌群菌株中98条16S rDNA的序列进行相互BLAST比较,发现在同一基因组内各个16S rDNA拷贝全局相似度最低为96.47%,在不同基因组间16S rDNA局部片段比对最小相似度达到99.72%,对应片段长度也有1417 bp.这点充分说明,该群的细菌完全共用同一种16S rDNA,根据16S rDNA给细菌分类的特点,它们应该属于同一个种.在亲缘关系上,枯草芽胞杆菌离蜡状芽胞杆菌群最近. 相似文献