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为了解云南蓝舌病病毒(Bluetongue virus,BTV) 1型M6基因流行株的遗传变异及其与国内外流行病毒的遗传进化关系,试验从细胞培养物中分别提取4株云南分离株BTV-1 (Y863、SZ120169、6-12和7-12) RNA,用M6基因特异引物进行RT-PCR扩增和测序,采用生物信息学软件对获得的M6基因编码区序列进行核苷酸、氨基酸同源性比对及遗传进化分析.结果表明,分别获得4株云南分离株BTV-1 M6基因1 763 bp序列;4株云南分离株BTV-1核苷酸同源性在95.2%~99.9%之间,氨基酸同源性在97.6%~99.8%之间,1979年师宗分离的Y863病毒毒株与2012年师宗(SZ120169)、2013年江城(6-12、7-12)分离的3株病毒毒株核苷酸同源性分别为95.5%、95.2%和95.2%,氨基酸同源性分别为97.6%、98.4%和98.2%,而近两年(2012、2013)分离病毒核苷酸和氨基酸同源性较高,分别在96.9%~99.9%和99.1%~99.8%之间;遗传进化分析发现,4株云南分离株BTV-1为Eastern基因群病毒,它们之间核苷酸和氨基酸同源性分别为95.2%~99.9%和97.6%~99.8%;进一步分析发现4株云南分离株BTV-1与希腊及澳大利亚 BTV-1型毒株亲缘关系较近,核苷酸和氨基酸同源性分别为90.4%~95.6%和95.1%~99.1%,而与地中海国家(意大利、法国、阿尔及利亚、摩洛哥和突尼斯)和南非毒株关系较远,核苷酸和氨基酸同源性分别在83.8%和95.7%以下.4株云南分离株BTV-1属于Eastern基因群病毒,云南分离株BTV-1 M6基因在自然进化中发生遗传变异缓慢,该基因可以用来进行BTV-1基因群分布及毒株的地理区域来源相关的研究. 相似文献
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为了对大庆地区患有腹泻疾病的舍饲牛进行病原鉴定,通过RT-PCR方法对病料进行检测,将轮状病毒阳性样品接种MA104细胞进行病毒分离,扩增分离株VP7、VP4片段,将扩增产物纯化后连接在pMD18-T载体上,转化到大肠杆菌TOP10感受态细胞中进行亚克隆,将鉴定为阳性的重组质粒进行序列测定,并利用DNA Star与GenBank上的参考序列进行同源性分析。结果表明,从样品中分离到1株BRV毒株,将其命名NX23。核苷酸序列分析表明,分离株NX23属于G8P[1]型轮状病毒,确认了G8P[1]型牛轮状病毒在我国的流行,为我国BRV分子进化及其RV分子流行病学的进一步研究奠定基础。 相似文献
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为研究鸡传染性支气管炎病毒(IBV)广西流行株的遗传变异情况,本研究从广西发病鸡中分离鉴定了1株IBV。参照GenBank中IBV的核苷酸序列设计2对引物,利用RT-PCR技术对分离毒株的N、M基因进行了克隆、序列测定,并与GenBank中发表的国内外参考毒株进行比对分析。结果显示,N基因序列全长为1 230 bp,编码409个氨基酸,M基因序列全长为678 bp,编码225个氨基酸。与参考毒株相比,分离株的N基因核苷酸序列同源性为87.2%~93.3%,推导的氨基酸序列同源性为90.0%~94.4%;M基因的核苷酸序列同源性为83.6%~91.0%,推导的氨基酸序列同源性为82.7%~92.9%。在遗传进化树中,本试验分离株Guangxi156株与BJ株和LX4株两个参考株位于同一个分支上,亲缘关系较近,而与其他参考株属于不同的分支,亲缘关系较远。结果表明,本试验分离株是一株新的IBV变异株。 相似文献
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为探究新疆某集约化牛场1～6月龄犊牛群中牛副流感病毒3型(BPIV3)的感染情况,对采集的60份犊牛鼻拭子样品进行RT-PCR检测、病毒分离鉴定及全基因组测序和遗传进化分析。结果显示,样品中BPIV3核酸阳性率为11.67%。从核酸阳性样品中分离获得1株BPIV3,并命名为XJ21032-1(45),其基因组全长为15 512 bp;遗传进化分析表明,XJ21032-1(45)属于BPIV3 B基因型,该分离株与澳大利亚的BPIV3 B基因型参考株Q5592(EU277658)的同源性最高为93.4%。本研究成功分离得到了1株B基因型BPIV3,证实B型毒株在我国的存在和流行,为BPIV3疫苗研发提供了原材料,也有助于我国BPIV3分子进化规律及溯源的进一步研究。 相似文献
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为了解牛感染帕利亚姆亚群达圭勒病毒（D’Aguilar virus,DAGV）情况,本研究应用BHK21细胞对2019年云南省景洪市采集的健康黄牛血液样品进行盲传病毒分离,对出现细胞病变的样品进行形态学、基因组带型和分子生物学鉴定,对分离到的病毒进行S2、S3、S7基因序列测定和比对分析。结果显示,有5个血液样品可致BHK21细胞病变,电镜观察到完整病毒颗粒呈球形,直径约50 nm;琼脂糖凝胶电泳结果发现5株新分离病毒基因组为10节段,呈现3-3-4的电泳带型特征,其带型特征与2014年在云南分离到的DAGV V106/YN/2014毒株相似;5株病毒S2、S3、S7基因核苷酸、氨基酸序列相似性均为100%,S3、S7片段核苷酸和氨基酸序列与中国本土分离的帕利亚姆亚群病毒（Palyamserogroup virus,PALV）毒株相似性最高;S2片段氨基酸与核苷酸序列与日本分离的DAGV相似性最高。S2、S3、S7基因遗传进化分析结果显示,5株新分离毒株间基因相似度为100%;5个毒株的S7与S3基因序列均与中国本土分离的已知部分PALV毒株在同一分支,亲缘关系较近,提示这5株毒株为PALV;5株毒株S2片段核苷酸序列与日本分离的部分DAGV毒株位于同一分支上,亲缘关系较近,进一步证实这5株毒株为PALV DAGV。本研究成功分离到5株DAGV毒株,并进行了基因片段遗传进化分析,为进一步开展DAGV流行病学研究提供基础。 相似文献
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参照GenBank中鸡传染性支气管炎病毒(IBV)的核苷酸序列设计1对引物,利用 PCR 扩增IBV广西株的M基因片段,将其克隆到pMD18-T载体中.序列分析结果表明,M基因全长为678 bp,编码225个氨基酸,近N端含有2个潜在的N-糖基化位点,3个跨膜区位于23—98肽段区,亲水区较疏水区更易变异.IBV广西株与国内外IBV参考毒株相比,核苷酸序列同源性为83.6%~92.5%,氨基酸序列同源性为82.7%~95.1%.系统进化分析结果显示IBV广西株与SAIB20和LX4两参考株位于同一个分支上,它们的亲缘关系较近,而与其他参考株属于不同的分支,亲缘关系较远.结果表明IBV广西株是1株新的IBV变异株. 相似文献
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3株猪Ⅱ型圆环病毒的分离及基因组序列分析 总被引：1，自引：0，他引：1
为了解混合感染中猪圆环病毒Ⅱ型(PCV2)毒株的遗传变异特性,本研究对2009年与高致病性猪繁殖与呼吸综合征病毒混合感染的病料中分离的3株PCV2通过PCR、免疫荧光等进行初步鉴定,并扩增病毒全基因组,用DNAStar对序列进行拼接和分析。结果表明:分离得到的HUN-09株(GQ449670)、HUB-09株(GQ449671)和SD-09株(GQ449669)3个PCV2毒株其全基因组长度均为1768bp,与国内外参考毒株核苷酸序列同源性为95%～99.7%,3个分离株之间的核苷酸序列同源性为97.6%～98.5%,与PCV1分离株核苷酸序列同源性为69%～70%。进化分析表明,本研究2009年分离的3株PCV2属于基因型PCV-2a。 相似文献
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1株牛病毒性腹泻病毒分离毒株的基因组特征 总被引：3，自引：3，他引：0
旨在从宁夏某奶牛群持续感染牛分离牛源牛病毒性腹泻病毒（BVDV）,并解析其基因组特征,为研究我国不同地区BVDV分离株遗传演化规律提供理论依据。利用BVDV抗原检测试剂盒检测宁夏回族自治区银川市某示范区的240头高产奶牛间隔两周的双份抗凝血,筛选持续感染牛,分离血液淋巴细胞制备裂解液接种牛肾细胞（MDBK）,分离鉴定获得BVDV株,克隆测序获得全基因组序列,比较分析其遗传演化关系。从该示范区高产奶牛筛选获得2头持续感染牛,分离获得1株非致细胞病变型BVDV,命名为NX2019/01。测序获得基因组全序列（12 107 nt）,其中ORF长11 703 nt,编码3 898个氨基酸。在基因组水平,NX2019/01株与我国SD-15、ZM-95、XC、LN-1等1m亚型分离株相似性较高（92.17%~93.84%）,但Erns、E1以及E2基因存在较大差异。示范区同群牛急性感染BVDV时,毒株E2蛋白N端编码区核苷酸突变可导致第9位或第67位氨基酸变异。重组分析表明,NX2019/01株E2基因179—288位核苷酸区段以及ZM-95株E1基因168位—E2基因332位核苷酸区段存在相似的重组信号,可能由主要亲本SD-15株与次要亲本LN-1株重组形成,表明NX2019/01株、ZM-95株在演化进程中与SD-15株以及LN-1株或早期流行的高度相似毒株存在密切关联。本研究从持续感染高产奶牛分离获得了牛源BVDV-1m亚型毒株,在基因组水平厘清了BVDV-1m亚型毒株的进化关系,并首次发现同亚型BVDV毒株基因同源重组,为进一步研究BVDV在我国的演化规律奠定了基础。 相似文献
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为了解贵州省猪流行性腹泻病毒(porcine epidemic diarrhea virus,PEDV)毒株ORF3及M基因的遗传变异情况,试验于2014年4月－2015年3月从贵州省5个地区采集105份腹泻仔猪的粪便,应用RT-PCR方法进行PEDV检测,从中选择8份PEDV阳性样本,扩增其ORF3及M基因,测序并进行序列比对分析.结果显示,从采集的105份粪便样本中可检出75份PEDV阳性样本,阳性率为71.43%;8株PEDV贵州株ORF3及M基因序列均无碱基缺失或插入;ORF3基因核苷酸及推导的氨基酸同源性在95.1%~100.0%与95.1%~99.6%之间,M基因核苷酸及推导的氨基酸同源性在98.4%~100.0%与98.7%~100.0%之间;氨基酸系统进化树分析结果显示,2014~2015年贵州流行株与近年来中国毒株、韩国毒株及泰国毒株亲缘关系较近,与疫苗株Attenuated DR13及CV777株亲缘关系较远.提示目前贵州省仔猪腹泻病原主要是PEDV,且为PEDV强毒株. 相似文献
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RAN Xu-hua ZHANG Yao CAO Si LU Yuan-he ZHANG Ling-ling LIU Yang-yang NI Hong-bo ZHU Zhan-bo WEN Xiao-bo 《中国畜牧兽医》2016,43(5):1368-1373
To identify the infection agents from Ningxia Hui Autonomous region, where feedlot cattle indicated bovine respiratory disease complex (BRDC), the M gene of the bovine parainfluenza virus type 3 was amplified by RT-PCR.The PCR product was ligated to pMD18-T vector and cloned to E.coli DH5α.The positive clones were sequenced and compared with the reference strains in GenBank by the molecular biology software.Sequence alignment results showed that a BPIV3 strain was isolated from the samples and named NX49, the M gene of NX49 included 1 056 nucleotides.Evolutionary analysis showed that the NX49 belonged to BPIV3 C genotype and shared 99.4% nucleotide identity with that of the SD0835 isolated in Shandong province.The characterization of the NX49 demonstrated that it was sensitive to temperature, acid and organic matter.The presence of Mg2+ showed no protection against the treatment at high temperature.The HA test suggested that the NX49 enables to agglutinate the guinea pig RBC at 4 ℃ and the titer was 1∶4.The study isolated a BPIV3 genotype C strain successfully, which facilitate the study of molecular evolution and epidemiology of BPIV3 in China. 相似文献
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To date, three genotypes A, B, and C of bovine parainfluenza virus type 3 (BPIV3) have been isolated from cattle and only limited studies on the pathogenesis of the genotype A of BPIV3 infection in calves and laboratory animals have been conducted. The pathogenesis of the genotypes B and C of BPIV3 infection in calves and laboratory animals have not been reported. To alleviate the difficulties associated with sourcing suitable calves for infection studies, the establishment of BPIV3 infection model using laboratory model animals could aid in increasing the knowledge of the pathogenesis of this virus. Therefore thirty Balb/c mice were intranasally inoculated with a Chinese BPIV3 strain SD0835 which was classified as genotype C. Virus replications in mice were demonstrated by using virus isolation and titration, immunofluorescent staining, and immunohistochemistry and had occurred in the respiratory tissues as early as 24h after intranasal inoculation. The results of immunofluorescent staining and IHC implicated that the lungs and tracheas might be the major tissues in which the SD0835 infected and replicated. The histopathologic examinations revealed that alveoli septa thickening and focal cellulose pneumonia were seen in the lungs of experimentally infected mice. The aforementioned results indicated that the SD0835 of the genotype C was pathogenic to Balb/c mice and the mouse infection model could cast light on the genotype C of BPIV3 infection process and pathogenesis. 相似文献
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Zhu YM Shi HF Gao YR Xin JQ Liu NH Xiang WH Ren XG Feng JK Zhao LP Xue F 《Veterinary microbiology》2011,149(3-4):446-451
Bovine parainfluenza virus type 3 (BPIV3) is one of the most important of the known viral respiratory pathogens of both young and adult cattle. However BPIV3 has not been detected or isolated in China prior to this study. In 2008, four BPIV3 strains were isolated with MDBK cells from cattle in China and characterized by RT-PCR, nucleotide sequence analysis, transmission electron microscope observation, hemadsorption and hemagglutination tests. Nucleotide phylogenetic analysis of partial hemagglutinin-neuraminidase (HN) gene for four isolates and the complete genome for the SD0835 isolate implicated that the four Chinese BPIV3 strains were distinct from the previously reported genotype A (BPIV3a) and genotype B (BPIV3b) and might be a potentially new genotype, which was tentatively classified as genotype C (BPIV3c). This is the first study to report the isolation and genetic characterization of BPIV3 from cattle in China. 相似文献
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从新疆地区某牛场出现发热、咳嗽等症状的多例病牛的肺组织中分离得到3株牛副流感病毒3型,分别命名为XJ03、XJ022、XJ023,对其中两株病毒XJ03和XJ023的基因组进行序列测定,测序结果显示,XJ03和XJ023毒株基因组全长分别为15474 bp(Gen Bank登录号为KU198929)和15475 bp,其核苷酸同源性为99.89%。同代表性的牛副流感病毒基因组比对发现,与我国的山东毒株SD0835同源性最高为99.3%,均属C型BPIV。在C型毒株中,与南韩12Q061分离株(C型)同源性最低为97.5%。F、N、HN、L、P、M蛋白基因氨基酸序列分析显示,与SD0835毒株相应序列对比,同源性分别为99.63%、92.15%、99.48%、99.28%、98.50%和100%,部分氨基酸发生了新的变异。试验结果将为今后更好地开展BPIV3防控奠定基础。 相似文献
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QU Su-jie SHI Kai-chuang SU Yan-qiong HU Jie MO Sheng-lan ZHANG Bu-xian LI Jun ZOU Lian-bin 《中国畜牧兽医》2015,42(12):3119-3125
To investigate genetic variation of avian infectious bronchitis virus (IBV) in Guangxi province,one strain of IBV was isolated from chicken.Two pairs of primers for amplifying the N and M genes of IBV were designed according to the sequences in GenBank.The N and M genes of the strain were amplified by RT-PCR,and they were proved to be the N and M genes of IBV by cloning,sequencing and compared with reference IBV strains published in GenBank.The results showed that the N gene from the IBV isolate consisted of 1 230 bp,coding 409 amino acids.The M gene from the IBV isolate consisted of 678 bp,coding 225 amino acids.The sequence analysis of N gene showed that it shared 87.2% to 93.3% nucleotide homologies and 90.0% to 94.4% deduced amino acid sequence homologies with IBV strains from GenBank.The M gene sequence analysis showed that it shared 83.6% to 91.0% nucleotide homologies and 82.7% to 92.9% deduced amino acid sequence homologies.The phylogenetic tree analysis showed that it was closely related to BJ and LX4 strains,and were clustered into one group;But with the distant relatives from other strains of IBV.These results suggested that the isolate was a new variant of IBV. 相似文献
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本研究旨在获得牛副流感病毒3型（BPIV3）的HNex蛋白及其多克隆抗体。以提取的BPIV3细胞毒的RNA为模板，利用RT-PCR方法扩增包含血凝素神经氨酸酶（HN）的基因片段，然后以此为模板扩增编码HN蛋白膜外区片段（HNex基因），并进行氨基酸序列测定。将HNex基因插入克隆载体pEASY-Blunt Simple中，经双酶切连接至pET-30a（+）表达载体中，构建重组原核表达载体pET-30a-BPIV3-HNex，转化大肠杆菌RosettaTM（DE3）pLysS感受态细胞，IPTG诱导后，用SDS-PAGE和Western blotting方法鉴定表达产物。经亲和层析方法纯化的HNex蛋白作为免疫原，制备兔抗BPIV3-HNex多克隆抗体。结果显示，本研究成功克隆BPIV3 HNex基因。原核表达蛋白结果表明，53 ku处有特异条带出现，并且可以与鼠抗His发生特异性免疫反应。免疫兔的血清中BPIV3 HNex抗体效价为1：819 200。Western blotting结果表明，制备的兔抗BPIV3 HNex多克隆抗体能与BPIV3蛋白发生特异性反应。总之，本研究利用原核表达系统表达BPIV3 HNex蛋白，并获得兔抗BPIV3 HNex多克隆抗体，为进一步探索BPIV3 HN蛋白的功能及亚单位疫苗研制提供参考。 相似文献
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This study was aimed to establish Nano-PCR and LAMP which were new rapid type of molecular detection technologies of bovine parainfluenza type-3 virus (BPIV3).The comparative specificity and sensitivity of BPIV3 Nano-PCR and LAMP PCR were tested, and the assay was applied to detect 10 clinical samples. The specificity and sensitivity tests showed that Nano-PCR and LAMP were only sensitive to BPIV3,without cross reaction to other viruses, such as bovine respiratory syncytial virus,infectious bovine rhinotracheitis virus and bovine viral diarrhea virus. In the sensitivity test, Nano-PCR and LAMP showed 10 times sensitivity than that of the traditional PCR technology,with the minimum detection of 4.16×102 copies/μL. Clinical test results showed that the coincidence rate of Nano-PCR and LAMP could reach to 100%, and the positive detection rate was much higher than that of normal PCR.Therefore, the Nano-PCR and LAMP methods established in this study provided a faster, sensitive and reliable tool for the clinical diagnosis of BPIV3. 相似文献
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WANG Yuchen TIAN Guangyuan ZHOU Yaping GUO Ting ZHAO Hongmei SUN Yajie ZHAO Fengmiao BIAN Yuchen YU Jialiang HAO Yongqing 《中国畜牧兽医》2022,49(8):3122-3130
【Objective】 This study was aimed to verify whether the NP protein of Bovine parainfluenza virus type 3 (BPIV3) could enhance the immune effect of BPIV3 inactivated vaccine【Method】 The antigenicity of the protein encoded by NP gene was analyzed by bioinformatics softwares,and the antigenic region was screened.The truncated NP gene sequence of BPIV3 was amplified by PCR and connected to pET-32a(+) plasmid.Then the high-purity BPIV3 NP protein was obtained by E.coli prokaryotic expression system and Ni affinity chromatography.It was confirmed by Western blotting.BPIV3 was inactivated with 0.3% formaldehyde and mixed with Freund's adjuvant 1:1 to prepare inactivated vaccine.Eight New Zealand White rabbits were randomly divided into four groups with two rabbits in each group,including inactivated vaccine group,NP protein group,inactivated vaccine and NP protein mixed group and control group.Blood samples were collected before and every 7 days after immunization.The levels of specific antibodies and neutralizing antibodies in New Zealand White rabbits of the four groups were measured and compared by indirect ELISA and virus neutralization test.【Result】 DNAStar analysis showed that the average antigen index of amino acid region 193-368 of NP protein was 0.4-1.7,and the hydrophilic index was 0-1.5,which proved that this region had strong antigenicity and hydrophilicity.The NP gene was amplified by PCR and the recombinant expression vector was constructed.Gene sequencing showed that the recombinant expression vector was consistent with the expected results.The results of SDS-PAGE showed that NP protein was highly expressed with a molecular weight of 50 ku and expressed in the form of inclusion body.Western blotting showed that the expressed protein had strong reactivity.The results of ELISA showed that 28 days after immunization,the specific antibody titer of the control group was 0,and the specific antibody titers of inactivated vaccine group,NP protein group and inactivated vaccine and NP protein mixed group reached 1:211,1:217 and 1:218,respectively.The results of virus neutralization test showed that 28 days after immunization,the neutralizing antibody titer of the control group was 0,and the neutralizing antibody titers of inactivated vaccine group,NP protein group and inactivated vaccine and NP protein mixed group were 1:23.32,1:24.48 and 1:24.98,respectively.【Conclusion】 BPIV3 NP protein could enhance the immune effect of BPIV3 inactivated vaccine.Adding NP protein to the inactivated vaccine could be used as a new vaccination method of BPIV3 inactivated vaccine. 相似文献
19.
试验旨在建立牛副流感3型病毒（bovine parainfluenza type-3 virus,BPIV3）纳米PCR（Nano-PCR）与环介导等温扩增技术（loop-mediated isothermal amplification,LAMP）新型快速分子检测技术,对其进行特异性和敏感性对比试验,并对10份临床样品进行了检测。特异性与敏感性试验结果显示,建立的Nano-PCR和LAMP方法只对BPIV3特异,而对牛呼吸道合胞体病毒、牛传染性鼻气管炎病毒、牛病毒性腹泻病毒无交叉反应;建立的Nano-PCR和LAMP方法具有相同的敏感性,均是普通PCR的10倍,最低核酸检出量均为4.16×102拷贝/μL。临床检测结果显示,建立的两种方法阳性符合率为100%,且阳性检出率均高于普通PCR。因此,本试验建立的Nano-PCR和LAMP方法为BPIV3的临床诊断提供了更快速、敏感、可靠的工具。 相似文献