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1.
为了解我国健康猪群中猪博卡病毒(PBoV)的感染状况,从屠宰场内采集猪淋巴结、脾脏和扁桃体等组织,分别采用套式PCR进行猪博卡病毒1型和2型的检测。结果表明,28份样品中有2份样品用猪博卡病毒2型引物可扩增出439 bp的特异性条带;结构蛋白VP1基因序列分析表明,这2份样品均为猪博卡病毒2型感染,且其VP1序列与猪博卡病毒参考株HM053694的同源性最高,分别达93.8%和93.3%,同属PBoV1/PBoV2进化分支;而与另一个猪博卡病毒V6/V7进化分支的同源性仅为35.1%～39.2%,距离较远。 相似文献
2.
Isolation in cell cultures and initial characterisation of two novel bocavirus species from swine in Northern Ireland 总被引：1，自引：0，他引：1
McKillen J McNeilly F Duffy C McMenamy M McNair I Hjertner B Millar A McKay K Lagan P Adair B Allan G 《Veterinary microbiology》2011,152(1-2):39-45
We report the isolation in cell cultures of two novel bocavirus species in pigs from farms in Northern Ireland with clinical postweaning multisystemic wasting syndrome (PMWS). We have designated the isolates as porcine bocavirus-3 (PBoV3) and porcine bocavirus-4 (PBoV4). To date 5082 and 4125 bps of PBoV3 and PBoV4 have been sequenced, respectively. PBoV3 and PBoV4 show nucleotide homology to other known bocaviruses in swine and other organisms. Open reading frame (ORF) analysis has shown that these viruses have a third small ORF, equivalent to the NP1 ORF that distinguishes the bocaviruses from other parvoviruses. A panel of porcine field sera was screened by indirect immunofluorescence against both viruses. Of the 369 samples analysed, 32 (8.7%) and 35 (9.5%) sera were seropositive for PBoV3 and PBoV4 respectively, thus providing serological evidence of the exposure of swine in the field to bocavirus-like viruses. To date, the clinico-pathological significance of these novel swine bocaviruses, as primary pathogens or as immunosuppresive triggers for other infectious agents, is undetermined. 相似文献
3.
猪博卡病毒PCR检测方法的建立及其初步流行病学调查 总被引：1，自引：0，他引：1
猪博卡病毒(PBoV)是一种新出现的病毒,可以导致仔猪急性腹泻。为建立该病毒的检测方法,本实验根据PBoV的NS1基因序列设计一对引物,建立了PCR检测方法。特异性试验结果表明,该方法能够从PBoV阳性样品中特异性的扩增出482 bp的片段,而对猪伪狂犬病毒、猪细小病毒、猪细小病毒、猪圆环病毒、沙门氏菌、大肠杆菌、猪链球菌、副猪嗜血杆菌的核酸样品均无非特异性扩增反应。敏感性试验显示,该PCR方法对PBoV的最低检测量为213.6拷贝。此外,应用该方法对湖北、湖南、河南省的各大猪场进行了流行病学调查,在79个规模化猪场采集的248份病料样品中有172份样品为PBoV阳性。其中,对4个发生腹泻疫情的规模化猪场进行了分群抽样调查,结果显示PBoV在腹泻猪群中的阳性率达到73.95%,并显著高于非腹泻猪群(47.83%)。本研究调查结果显示PBoV在国内猪群中流行广泛而且感染率高。 相似文献
4.
猪博卡病毒PCR检测方法的建立及其应用 总被引：2，自引：0，他引：2
猪博卡病毒是最新发现的一种DNA病毒,于2009年首次在瑞典患仔猪断奶后多系统衰竭综合征的猪体内被鉴定。为了及时地评估其在我国的流行情况,本研究根据GenBank上递交的唯一一条猪博卡病毒核苷酸序列设计了一对特异性引物,并首次建立了猪博卡病毒的PCR检测方法。该方法特异性强,敏感度高,重复性好,对2009年我国部分省市猪场的191份临床样品进行检测,结果75份为猪博卡病毒阳性,这表明我国猪群中猪博卡病毒相当流行。本研究建立的PCR方法可以作为猪博卡病毒在临床上的一种诊断技术。 相似文献
5.
利用宏基因组学鉴定藏猪腹泻粪便病毒种群 总被引：2，自引：2，他引：0
为进一步了解藏猪腹泻粪便中病毒种群，从青藏高原地区16个藏猪场采集腹泻粪便样本146份，将样本混合成一个pool样，提取RNA反转录成cDNA，建库后利用TruSeq Illumina测序，对测序的序列进行整理分析及相关病毒的分子特征进行研究。数据分析结果表明：藏猪腹泻粪便样本病毒种群包括11个病毒科的19种病毒，主要以线性和环状的小DNA病毒为主，如猪粪相关环状病毒7型、猪腺病毒和猪博卡病毒（PBoV）等；与腹泻相关的病原有猪流行性腹泻病毒（PEDV）、猪圆环病毒2型（PCV-2）和牛病毒性腹泻病毒1型（BVDV-1）3种；与腹泻相关的新发病原有porcine bufavirus、rabovirus和pasivirus 3种。利用SOAP软件组装出猪细小病毒6型（PPV-6）、PCV-2、PBoV-2完整或接近全长的基因组和戊型肝炎病毒（HEV）完整的ORF2基因序列，系统发育结果显示PPV-6和PCV-2与参考毒株有较近的遗传进化关系，PBoV-2与参考毒株有较远的遗传进化关系，单独聚为一簇，可能是一个全新的基因型。为进一步调查PCV-2在藏猪腹泻粪便中的检出率，对采集146份样本进行检测，检出率为10.96%（16/146，95% CI：6.4%~17.2%），且与四川地区PCV-2流行株有较近的亲缘关系。本研究发现藏猪腹泻粪便中病毒种类复杂多样，且可能存在与其他动物和人交叉感染情况，具有重要的公共卫生学意义，也为藏猪腹泻病防控提供一定的理论依据。 相似文献
6.
Noroviruses (NoVs) and sapoviruses (SaVs) of the family Caliciviridae are emerging enteric pathogens in humans and animals. Recent detection of genogroup II norovirus (GII NoV) RNA from swine raises public health concerns about zoonotic transmission of porcine NoVs to humans. However, few papers reported genotype distributions and epidemiological features in swine farms and their genetic relationship to human strains, which was the objective of our study. This study investigated the epidemiological features and genotypes of caliciviruses in swine farms using 533 pig faecal samples from six farms in central and southern Taiwan, tested for viral RNA using RT-PCR targeting the conserved polymerase gene. NoVs and SaVs were detected with a positive rate of 7.1% and 0.6%, respectively. To confirm the positive rate of NoVs, 255 pig faecal samples from two farms in central Taiwan were tested with primer pairs targeting the partial capsid gene of GII, and 32.3% of the positive rate was found. Furthermore, the results from the capsid region suggested a higher positive rate of 41.7% in winter than 26.4% in summer with statistical significance (P < 0.05). Sequence analysis showed 29 strains belonging to GII.4 (human) and nine strains belonging to GII.11 (swine) identified based on the partial polymerase gene. Additional genotypes clustered with GII.2 (human) and GII.18 (swine) were also characterized based on the partial capsid gene. SaVs detected in porcine faecal samples belonged to genogroup III (GIII), which clustered with the PEC-Cowden strain. Our study demonstrated the presence of multiple genotypes of both human and porcine NoVs infecting swine of various ages asymptomatically. Although the zoonotic potential of detected human NoVs in swine was not conclusive owing to the lack of local human faecal samples, our study revealed the importance of monitoring emerging strains in swine to mitigate the potential impact of recombinant NoVs infecting the human population. 相似文献
7.
Prayuth SAEKHOW Shingo KISHIZUKA Natsuha SANO Hiroko MITSUI Hajime AKASAKI Takahiro MAWATARI Hidetoshi IKEDA 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2015,77(12):1581-1586
The infection status of 15 viruses in 120 pigs aged about 6 months was investigated based
on tonsil specimens collected from a slaughterhouse. Only 5 species of porcine
parvoviruses and porcine circovirus type 2 (PCV2) were detected at high frequencies; 67%
for porcine parvovirus (PPV) (PPV-Kr or -NADL2 as the new abbreviation), 58% for PPV2
(CnP-PARV4), 39% for PPV3 (P-PARV4), 33% for PPV4 (PPV4), 55% for PBo-likeV (PBoV7) and
80% for PCV2. A phylogenetic analysis of PPV3 suggested that Japanese PPV3s showed a
slight variation, and possibly, there were farms harboring homogeneous or heterogeneous
PPV3s. Statistical analyses indicated that the detection of PCV2 was significantly
coincidental with each detection of PPV, PPV2 and PPV3, and PPV and PPV4 were also
coincidentally detected. The concurrent infection with PCV2 and porcine parvoviruses in
the subclinically infected pigs may resemble the infection status of pigs with the
clinical manifestations of porcine circovirus associated disease which occurs in 3–5
months old pigs and is thought to be primarily caused by the PCV2 infection. 相似文献
8.
Osamu Taira Hirohito Ogawa Aki Nagao Kotaro Tuchiya Tetsuo Nunoya Susumu Ueda 《Veterinary microbiology》2009,139(3-4):347-350
Torque teno virus (TTV) was first isolated from a human hepatitis patient in 1997. TTV was also identified in several animals, including pigs, cattle, sheep, cats and dogs. In this study, we analysed the prevalence of swine TTV genogroups 1 (TTV1) and 2 (TTV2) in Japanese swine populations with suspected post-weaning multisystemic wasting syndrome and porcine respiratory disease by using a nested polymerase chain reaction method. Of 153 serum samples from 16 different herds in Japan, TTV1 was detected in 46 samples (30%), TTV2 in 47 samples (31%) and both in 15 samples (10%). There was no significant difference in the detection rate among geographical regions. The overall prevalence rate of TTV genogroups was significantly lower in ≤30-day-old pigs (11%) compared to that in older age groups (54–82%). These results suggest that swine TTV may be widespread in post-weaning pigs and could play aetiological roles in pig diseases in Japan. This is the first report on the prevalence of swine TTV in Japan. 相似文献
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根据GenBank公布的猪博卡病毒(PBoV)序列,通过VP1/2基因设计引物和Taq Man探针建立实时荧光定量PCR检测方法。建立的方法与PPV、PRRSV及PCV均无交叉反应,具有较高特异性,在107 copies/mL～101 copies/mL模板范围内具有良好的线性关系,所制作的标准曲线相关系数为0.997,最低可检测到101copies/mL的阳性质粒。说明所建立的PBoV实时荧光定量PCR检测方法具有灵敏度高、特异性好和精确性高等优点。 相似文献
11.
为明确猪博卡病毒福建株非结构蛋白NP1的特征,本研究根据GenBank中登录的非结构蛋白NP1的基因特征,设计特异性引物从一份患有断奶仔猪多系统衰竭综合征的仔猪肺脏和淋巴结基因组DNA中扩增到猪博卡病毒非结构蛋白NP1的全长基因序列。测序结果显示,本试验克隆的猪博卡病毒非结构蛋白NP1的基因全长为675bp,编码有224个氨基酸,其与美国株猪博卡病毒(OH110株)核苷酸同源性最高,达97.3%,但与美国株猪博卡病毒(IN109-1株)核苷酸同源性仅为81.8%;与英国北爱尔兰野猪博卡病毒(F41株和64-1株)同源性均不高,分别为82.5%和80.9%;与猪博卡病毒(H18株)核苷酸同源性最低,仅为43.8%。通过对猪博卡病毒代表株进行核苷酸同源性比对分析发现,猪博卡病毒存在3个主要的基因群,不同基因群非结构蛋白NP1的核苷酸同源性均低于50.0%。结果提示需对猪博卡病毒进行明确的划分,不同来源的猪博卡病毒可细分为3个明显的代表种。 相似文献
12.
Midgley SE Bányai K Buesa J Halaihel N Hjulsager CK Jakab F Kaplon J Larsen LE Monini M Poljšak-Prijatelj M Pothier P Ruggeri FM Steyer A Koopmans M Böttiger B 《Veterinary microbiology》2012,156(3-4):238-245
Group A rotaviruses can infect both humans and animals. Individual rotavirus strains can occasionally cross species barriers and might hereby contribute to the emergence of new genotypes in heterologous hosts. The incidence and impact of zoonotic rotavirus are not well defined, and one reason for this is a lack of data about strains circulating in suspected reservoir animal hosts. In this study we report the incidence, genetic diversity, and molecular epidemiology of rotaviruses detected in domestic cattle and swine in 6 European countries. From 2003 to 2007, 1101 and more than 2000 faecal specimens were collected from swine and cattle, both healthy and diarrhoeic, and tested for rotaviruses. Viruses from positive stools were genotyped and a subset of strains was characterized by nucleotide sequencing and phylogenetic analysis of the VP7 (G) and VP4 (P) genes. Rotaviruses were detected in 43% of bovine samples and in 14% of porcine samples. In cattle, 10 different combinations of G and P types were identified and the most common strains were G6P[11] and G6P[5]. In swine, the number of identified G-P combinations was higher (n=21), however, no single combination was predominant across Europe. Newly described genotype specificities, P[27] and P[32], were identified in swine. When compared at the nucleotide sequence level, the identified porcine rotavirus strains and contemporary human strains grouped together phylogenetically, whereas bovine rotavirus strains formed separate clades. These data demonstrate large genetic diversity of porcine and bovine rotavirus strains across Europe, and suggest that livestock herds may serve as potential reservoirs for human infections. 相似文献
13.
为确诊广东省阳江市某规模化猪场（存栏800头母猪）保育猪发病死亡的原因,本试验对从该发病猪场采集的3份肺脏、肝脏、脾脏临床样品进行细菌学检测及药敏试验,采用PCR/RT-PCR检测临床样品中猪伪狂犬病病毒（PRV）、猪瘟病毒（CSFV）、猪繁殖与呼吸综合征病毒（PRRSV）、猪圆环病毒2型（PCV2）、猪圆环病毒3型（PCV3）和猪肺炎支原体等病原。对特异性扩增的3株PRRSV的ORF5基因产物进行序列测定,与VR2332、HuN4、JXA1、CH-1a等代表毒株进行核苷酸序列同源性分析,并构建系统进化树。结果表明,试验分离鉴定出1株副猪嗜血杆菌（Hps）,对7种临床常用药如阿莫西林、头孢拉定等均有较强的敏感性。同源性比对结果表明,3株PRRSV （LJW1、LJW2和LJW3）ORF5基因核苷酸同源性为99.3%~99.8%,与欧洲型代表毒株Lelystad核苷酸同源性为64.0%~64.2%,与HP-PRRSV毒株JXA1、HuN4、CH-1a和TJ核苷酸同源性较高,分别为99.2%~99.5%、99.0%~99.3%、94.5%~94.9%和98.8%~99.2%;与中国河南和广西分离的HP-PRRSV毒株HeNzm1-16和GXLZ05-2015核苷酸同源性较高,分别为99.3%~99.7%和99.2%~99.7%,与美洲型经典疫苗株MLV、美洲型标准株NC、美洲型经典株VR2332核苷酸同源性较低,分别为88.5%~88.8%、85.2%~85.5%和82.3%~82.6%。PRRSV ORF5基因系统进化树分析表明,3株PRRSV均属于美洲型毒株,与国内HP-PRRSV代表毒株JXA1、HuN4和TJ等处于同一分支,亲缘关系较近。本研究揭示了该场保育猪发病病原,并从分子水平上明确了分离的3株PRRSV与不同代表毒株的亲缘关系,为弱毒疫苗的合理选择使用和综合防控PRRSV提供了参考依据。 相似文献
14.
为配合猪瘟新型疫苗的研发,建立了猪瘟病毒NS3蛋白抗体检测间接ELISA,以期达到有效区分新型疫苗免疫猪与自然感染猪(包括常规疫苗接种猪)的目的。以接种猪瘟病毒(CSFV)石门株的PK-15细胞为模板提取总RNA,经特异性PCR扩增获得长度为2 049bp的CSFV NS3基因,将其克隆至插入了具有自聚集自切割功能短肽的原核表达载体pET-32a(+),在大肠埃希菌Rosetta(DE3)中优化表达CSFV石门株NS3基因。Western blot分析表明重组蛋白NS3具有反应原性。将纯化的重组蛋白NS3作为包被抗原建立检测CSFV NS3抗体的间接ELISA,以美国爱德士(Idexx)猪瘟病毒抗体检测试剂盒抗体检测结果为标准,对502份血清样品进行检测。结果表明,所建立方法的特异性为96.9%,敏感性为89.7%,总符合率为95.8%,为猪瘟新型疫苗的推广应用提供了血清学检测方法。 相似文献
15.
Jamie R. V. Sookhoo Arianne Brown-Jordan Lemar Blake Ridley B. Holder Sharon M. Brookes Stephen Essen Christine V. F. Carrington Ian H. Brown Christopher A. L. Oura 《Tropical animal health and production》2017,49(6):1117-1124
The objective of this study was to evaluate the seroprevalence and identify the strains of swine influenza virus (SwIV), as well as the seroprevalence of porcine parvovirus (PPV), transmissible gastroenteritis virus (TGEV), porcine reproductive and respiratory syndrome virus (PRRSV), porcine respiratory coronavirus (PRCV), porcine circovirus type 2 (PCV-2), and classical swine fever virus (CSFV) in pigs in Trinidad and Tobago (T&T). Blood samples (309) were randomly collected from pigs at farms throughout T&T. Serum samples were tested for the presence of antibodies to the aforementioned viruses using commercial ELISA kits, and the circulating strains of SwIV were identified by the hemagglutination inhibition test (HIT). Antibodies against SwIV were detected in 114 out of the 309 samples (37%). Out of a total of 26 farms, 14 tested positive for SwIV antibodies. HI testing revealed high titers against the A/sw/Minnesota/593/99 H3N2 strain and the pH1N1 2009 pandemic strain. Antibodies against PPV were detected in 87 out of the 309 samples (28%), with 11 out of 26 farms testing positive for PPV antibodies. Antibodies against PCV-2 were detected in 205 out of the 309 samples tested (66%), with 25 out of the 26 farms testing positive for PCV-2 antibodies. No antibodies were detected in any of the tested pigs to PRRSV, TGEV, PRCV, or CSFV. 相似文献
16.
Lester J. Pérez Heidy Díaz de Arce Maria I. Percedo Patricia Domínguez Maria T. Frías 《Research in veterinary science》2010,88(3):528-530
To obtain information about the porcine circovirus type 2 (PCV2) infection status of pigs in Cuba and the probable association of PCV2 with other porcine viruses, tissue samples collected from ill pigs were evaluated using polymerase chain reaction (PCR). The PCR analysis showed that 67.7% of the samples (23/34) from seven swine herds of six different geographic regions were detected to be positive for PCV2. Ten of the 23 PCV2 positive samples (43.5%) shown a concurrent infection with porcine parvovirus (PPV) and 17 of 23 PCV2 positive samples (73.9%) exhibited a concomitant infection with classical swine fever virus (CSFV). This study is the first report of PCV2 infecting pigs with different clinical conditions in Cuban swine herds and provides evidence of PCV2 co-infection with PPV and CSFV in the field. 相似文献
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Swine influenza virus (SIV) of H1N1 and H3N2 subtypes are dominated in European pigs population. "Classical swine" H1N1 subtype was replaced by "avian-like" H1N1 subtype. It co-circulates with H3N2 reassortant possessing "avian" genes. In the present study, 41 SIV strains isolated from pigs with pneumonia, raised in 20 Polish farms, were identified and characterised. Since it was evidenced that isolates from the same geographic district and the same year of isolation are in 100% similar, 15 strains representing different district and different year of isolation were chosen to construct phylogenetic trees. Two genes, conservative matrix 1 (M1) and the most variable, haemagglutynin (HA), were sequenced and subjected into phylogenetic analysis. The results of the analysis confirmed that "avian-like" swine H1N1 strains evolved faster than classical SIV strains. HA gene of these isolates have been derived from contemporary strains of "avian-like" SIV. In contrast, the M1 gene segment may have originated from avian influenza viruses. H3N2 strain is located in swine cluster, in the main prevalent European group of H3N2 isolates called A/Port Chalmers/1/73-like Eurasian swine H3N2 lineage, which has evolved separately from the human H3N2 virus lineage around 1973. 相似文献
19.
为建立一种快速、敏感和特异地鉴别尼帕病毒(NiV)和高致病性猪繁殖与呼吸综合征病毒(HP-PRRSV)的检测方法,本试验以NiV M基因和HP-PRRSV nsp2基因为靶序列,通过优化反应条件建立了一种二重荧光RT-PCR检测方法,并对该方法的特异性、定量线性范围、敏感性和重复性进行了评价及初步应用.结果显示,用该方法检测NiV M基因和HP-PRRSV nsp2基因的RNA标准对照(NiV-M-RNA和HP-PRRSV-nsp2-RNA),线性范围分别为4.6×101~4.6×107和4.1×101~4.1×108拷贝/μL;最低检出限分别为46和4.1拷贝;该方法组内试验和组间试验的变异系数均小于2.0%,显示出良好的可重复性;该方法仅对NiV和HP-PRRSV呈现特异性扩增曲线,不与猪瘟病毒(CSFV)、猪流行性腹泻病毒(PEDV)、猪流感病毒(SIV)、猪细小病毒(PPV)、猪伪狂犬病病毒(PRV)和猪圆环病毒2型(PCV2)发生交叉反应.用该方法对236份猪实际样品进行NiV和HP-PRRSV核酸检测,所有样本的NiV检测结果均为阴性,8份样本的HP-PRRSV检测结果为阳性.本研究建立的方法为猪实际样本中NiV和HP-PRRSV的鉴别检测提供了一种快速、敏感和特异的技术手段. 相似文献
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To establish a rapid,sensitive and specific assay for the differential detection of Nipah virus (NiV) and highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV),a duplex Real-time RT-PCR was developed with specific primers and probes targeting to the special sequences of NiV M gene and HP-PRRSV nsp2 gene by optimization of reaction conditions.The performance of the assay was linear ranging from 4.6×101 to 4.6×107 copies/μL for RNA standard control of NiV M (NiV-M-RNA) and from 4.1×101 to 4.1×108 copies/μL for RNA standard control of HP-PRRSV nsp2 (HP-PRRSV-nsp2-RNA),and detection limits of the assay was 46 copies for the NiV-M-RNA and 4.1 copies for the HP-PRRSV-nsp2-RNA,respectively.The coefficients of variation (CVs) of both inter-assay and intra-assay repeatability were less than 2.0%,showing good repeatability.The assay was able to specifically detect NiV and HP-PRRSV simultaneously without cross-reaction with classical swine fever virus (CSFV),porcine epidemic diarrhea virus (PEDV),swine influenza virus (SIV),porcine parvovirus (PPV),pseudorabies virus (PRV) and porcine circovirus type 2 (PCV2).Of the 236 samples from pigs for both NiV and HP-PRRSV detection by the established assay,all the samples were negative for NiV,8 samples were HP-PRRSV positive.In conclusion,this assay offers a useful approach for the differential detection of NiV and HP-PRRSV in clinical specimens from the pigs. 相似文献