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1.
中国猪瘟兔化弱毒株（C-株）兔脾组织毒主要保护性抗原E2（gp55）基因序列分析 总被引：7，自引：2，他引：5
利用反转录（RT）及套式PCR（N-PCR）方法扩增了中国猪瘟兔化弱毒株（C-株）兔脾组织毒主要保护性抗原E2（gp55）基因，成功地将其克隆并测定了核苷酸序列，与国内外已发表的猪瘟病毒（HCV）E2基因序列比较的结果是C-株兔脾毒与C-株细胞（SK6）毒、C-株疫苗（犊牛睾丸细胞，HCLV-C）毒、HCV-SM株（石门）毒、Brescia株（荷兰）毒、Alfort株（德国）毒的E2核苷酸序列同源性分别为98.87％、98.34％、94.58％、91.00％、80.78％；氨基酸同源性分别为98.95％、97.37％、94.22％、91.60％、89.23％。对C-株兔脾毒与C-株细胞毒、经典强毒及国内流行野毒E2上的A、B、C三个中和性抗原区的氨基酸组成进行了比较，其结果为C-株兔脾毒与C-株细胞毒的差异很小甚至没有差异，而与流行野毒及经典强毒在B、C区有较大的差异。我国经典强毒石门毒与国内80年代和90年代流行毒之间有明显的差异，表明我国猪瘟流行毒株发生了变化。 相似文献
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Fragments within S1 genes ((poly100)S1) of infectious bronchitis virus (IBV) strains ZJ971, M41 and SC021202 (SC) were subcloned into a prokaryotic expression vector and expressed in Escherichia coli. Monoclonal antibodies (mAbs) against the recombinant (poly100)S1 proteins were produced, characterized and used to analyse epitopes on the S1 subunit of IBV. Nine mAbs raising from the three (poly100)S1 proteins recognized five different epitopes of the S1 subunit, designated as S1-A, B, C, D and E. Epitopes S1-C and S1-D are common for the three IBV strains, while S1-A and S1-B exist on ZJ971 and M41 strains, and S1-E was a strain-specific epitope for SC strain. Immunocytochemistry indicated that all the mAbs to the (poly100)S1 proteins can react with the homologous S1 glycoprotein expressed in Vero cells. Moreover neutralization test demonstrated that only mAbs 6E2, 4F9 and 6G4 had neutralization activity for the homologous IBV. These mAbs to (poly100)S1 protein were potential candidates for detecting and distinguishing IBV strains, and also used to examine antigenic variation of the S1 protein. 相似文献
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猪瘟病毒E2基因部分核苷酸序列的遗传进化关系的研究 总被引：4，自引：0，他引：4
本研究利用RT-PCR及测序获得了16株猪瘟病毒E2基因部分核苷酸序列。利用DNAStar软件对其6株已发表的猪瘟病毒毒株序列进行了比较和分析，构建了猪瘟病毒遗传发生树。结果可以看出所绘制的遗传发生树分为2个组群，每个组群分为3个亚组群。13株猪瘟流行毒在2个组群中均有分布，猪瘟石门系强毒和C株属于同一组群、同一亚组群。70～80年代分离的4株猪瘟病毒755和Alfort株（法国）在同一组群，25%和Brescia株（意大利）是同一组群，90年代分离的9株猪瘟病毒33.3%和Alfort株（法国）在同一组群，66.7%和Brescia株（意大利）是同一组群。13株猪瘟流行毒株中7株和C株在同一组群，其中70～80年代的1株，90年代的6株。其余的6株猪瘟流行毒株均在另一组群。不同地区及不同材料C-株疫苗的E2基因的核苷酸序列有一定的差异，GPE株与中国的C株有较近的遗传进化关系，而法国的Thiverval株则与中国C株的遗传进化关系较远。本研究的结果对了解我国猪瘟分子流行病学的特点具有重要的意义。 相似文献
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Porcine reproductive and respiratory syndrome virus (PRRSV) was divided into North American and European genotypes. NSP1 was an important non-structural protein of PRRSV, which was auto-cleaved from the replicase polyprotein into NSP1α and NSP1β subunits and played an important role in the immune suppression. In this study, six monoclonal antibodies (MAbs) against the recombinant PRRSV NSP1, expressed in Escherichia coli system, were screened out and identified. Western blot and IFA results indicated that 4 out of 6 MAbs recognized the recombinant NSP1α and 2 MAbs recognized NSP1β. Epitope mapping results indicated that MAb 4H2 recognized the linear epitopes E(54)EPLRW(59) in NSP1α, MAbs (2G5, 3E11 and 4D4) recognized the epitopes H(157)VLTNLP(163) in NSP1α, and MAbs 3C7 and 1H7 reacted with the epitopes 185aa to 232aa in NSP1β. Protein sequence alignment of NSP1 indicated E(54)EPLRW(59) was conserved in all North American PRRSV strains, whereas European type strains has variable amino acids in this region. The epitope H(157)VLTNLP(163) was relatively conserved among all PRRSV strains, except for a L162→S162 change in European type strains. The epitope 185-232aa was variable among North American PRRSV strains. These results may facilitate future investigations into the function of NSP1 of PRRSV and diagnostic methods for PRRSV infection. 相似文献
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Ohe K Sakai S Sunaga F Murakami M Kiuchi A Fukuyama M Furuhata K Hara M Soma T Ishikawa Y Taneno A 《Veterinary research communications》2006,30(3):293-305
We analysed genogroups of four feline calcivirus (FCV) isolates (FCV-S, H10, Ao198-1 and ML89) obtained from cats that experienced
FCV infection after having been vaccinated against FCV. New PCR primer sets (8F/8R, Ao-S/Ao-A, cp-S/cp-A) were also designed,
since the conventional Seal primer failed to amplify the target sequences in two samples. The genogroups of the four isolates
as well as eight global and 17 domestic strains were determined by phylogenetic analysis of their amino acid sequences. One
out of the four strains (25%) isolated in this study, H10, was grouped into genogroup I, along with the vaccine strains F9
and FCV-255. The other three isolates (75%) belonged to genogroup II. Thus, there were more isolates in genogroup II than
in genogroup I. However, the antibody values of the four isolates against cat anti-F9 antisera were significantly decreased.
There may be no relationship between the neutralizing antibody titre and genogroup. Amino acid sequence alignment of the four
isolates showed that only a single amino acid in region C, which is involved in neutralization epitopes, was different in
ML89 strain from that of F9. The other three strains, H10, Ao198-1 and FCV-B, shared the same amino acid sequence with F9.
Alignment of amino acids for linear epitopes in the F9 strain, which are located at regions D and E, showed variations in
5' hypervariable region (HVR) of E, whereas D and conE had only synonymous substitutions i.e. no change in the amino acid
sequence. This mutation in 5' HVR of region E suggested a vaccine breakdown, as the region is known to be essential for antigenicity.
The genogroup II FCV is likely to be the cause of the FCV infection in this study, while the vaccine strains belong to genogroup
I. Thus, the existing vaccine may need reevaluation for its effectiveness. 相似文献
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为研究猪δ冠状病毒(PDCoV)西安株M基因的遗传特征,以分离并鉴定的PDCoV西安株(CHN-XA18-35株)为材料,根据GenBank中已发表的PDCoV M基因保守序列设计引物,经RT-PCR扩增PDCoV西安株M全基因序列并测序,应用生物信息学方法对M基因进行分析。结果显示,CHN-XA18-35株M基因序列与其他地区PDCoV参考株的核苷酸同源性为98.47%~99.54%,推导的氨基酸序列同源性为97.24%~99.08%;CHN-XA18-35株与其他地区PDCoV参考株相比,M蛋白第189位氨基酸由异亮氨酸(IIe)突变为精氨酸(Arg);CHN-XA18-35株M蛋白的10-27、34-56、66-87位氨基酸属于跨膜区;跨膜区氨基酸多为疏水性氨基酸,且存在α-螺旋;潜在的B细胞抗原表位位于M蛋白的102-107 aa(LSPESR)、149-158 aa(NGISVRNPPQ)、200-209 aa(LHTITTSKAG)。结果表明,CHN-XA18-35株M蛋白第189位氨基酸发生了突变,其B细胞抗原表位与其他PDCoV株相比未发生改变。 相似文献
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【目的】监测当前湖南省猪圆环病毒2型(Porcine circovirus type 2,PCV2)流行毒株及其衣壳蛋白(capsid protein, Cap)变异情况,并预测Cap蛋白细胞毒性T淋巴细胞(cytotoxic T lymphocyte, CTL)表位,为新型PCV2疫苗研制和病毒净化提供参考依据。【方法】本研究对2019-2021年于湖南省6个地区收集的17份PCV2阳性组织样品进行PCV2全基因组序列扩增及测序分析,绘制系统进化树,利用生物信息学方法分析Cap蛋白氨基酸变异情况,并预测CTL表位。【结果】系统进化树显示,获得的17株PCV2全基因组序列中,1株PCV2a、7株PCV2b和9株PCV2d。Cap蛋白氨基酸序列比对分析发现,共有16个氨基酸残基突变位点位于病毒Cap蛋白表面,且有11个突变位点参与构象型表位的形成。此外,共预测出9个PCV2 Cap蛋白潜在的CTL表位,其中4个表位(16-24、28-36、136-144和179-187位氨基酸)在GenBank的1 610株PCV2不同基因型毒株中高度保守。通过TCR-pMHC复合物3D结构对4个保守性... 相似文献
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为了解禽白血病病毒（ALV）贵州流行株的遗传变异情况及分子特征,本试验基于ALV env基因设计合成引物对禽白血病贵州临床病例进行目的基因扩增、克隆和序列分析。结果显示,从临床病例中筛选获得3份阳性样本,PCR扩增均获得大小约921 bp的目的基因片段,将其命名为：GZ-ALV-1株、GZ-ALV-2株和GZ-ALV-3株。序列分析结果显示,3株ALV贵州流行株之间核苷酸同源性在97.2%~97.6%之间,与国内外ALV-J的同源性相对较高,为93.1%~99.3%;而与A、B、C、D、E、K亚群ALV同源性仅为51.4%~53.2%。系统进化分析显示,3株ALV贵州流行株与ALV-J亚群参考株处于同一分支,表明本试验所检测的ALV毒株均为ALV-J亚群;与A、B、C、D、E、K亚群处于不同进化分支。基因变异分析显示,3株流行株37处相同核苷酸变异导致17处氨基酸发生位点变异,其中9个可变点在高变区hr1和hr2,1个可变点在低变区vr3。结果表明,3株ALV贵州流行株均为ALV-J亚群,env基因存在位点发生了变异,且可变位点位于序列高变区。本研究结果为明确贵州禽白血病流行概况及ALV的防控与净化提供基础数据。 相似文献
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猪瘟病毒E2基因的克隆与鉴定 总被引：1，自引：0，他引：1
根据猪瘟病毒Brescia株全基因序列设计合成特异性引物对P1/P2对，采用异硫氰酸胍一步法（略加修改），从PK15细胞培养物中提取石门株、兔化弱毒疫苗株、野毒03株及野毒07株猪瘟病毒的总RNA。应用RT-PCR方法成功地扩增出E2全基因组约1273bp的cDNA片断，经电泳证明其大小与推测相符。分别将石门株、兔化弱毒疫苗株、野毒03株及野毒07株的E2基因片段克隆到pGEM-T载体质粒，通过对这4个重组质粒的EcoRI酶切鉴定、直接与套式PCR扩增，并对E2主要抗原区域进行224bp的序列测定，表明E2全基因克隆成功，为E2全序列测定和结构与功能的分析奠定了基础。 相似文献
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试验旨在对乌蒙凤鸡生长激素（growth hormone，GH）基因多态性进行研究，并开展生物信息学分析。以乌蒙凤鸡为研究对象，构建DNA池，PCR扩增GH基因所有外显子和部分内含子，采用直接测序法检测GH基因多态性，利用生物信息学软件对GH蛋白二级结构、三级结构及基本性质（理化性质、疏水性、信号肽、跨膜区、卷曲螺旋区及保守结构域）进行分析。结果显示，乌蒙凤鸡GH基因存在8个SNPs，分别是T1453C、A1489G、A1512G、G2152A、G3206A、G3347A、C3452A和C3453G，其中G2152A、C3452A和C3453G只发生在无凤头乌蒙凤鸡中；C3452A、C3453G位于非编码区，T1453C、A1489G、A1512G、G2152A和G3206A位于内含子上，G3347A位于外显子5。突变后GH基因mRNA结构发生变化，自由能提高，稳定性降低。生物信息学分析表明，GH蛋白为分泌蛋白，含有信号肽序列，有1个典型的卷曲螺旋结构和疏水区，保守结构域在10~214位氨基酸之间，为非跨膜蛋白，且不稳定。结果表明，乌蒙凤鸡GH基因具有较高的遗传多样性，可为乌蒙凤鸡的保种选育提供参考。 相似文献
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R A Simkins P A Weilnau J Bias L J Saif 《American journal of veterinary research》1992,53(7):1253-1258
Five nonneutralizing monoclonal antibodies (MAb) generated to the virulent Miller strain of transmissible gastroenteritis virus (TGEV) and specific for the S protein were characterized. Competition assays between purified and biotinylated MAb indicated that MAb 75B10 and 8G11 mapped near a new subsite, designated V and 2 MAb, 44C11 and 45A8, mapped to a previously designated subsite D. A fifth MAb mapped between subsites V and E. These MAb were tested with 3 previously characterized MAb to subsites A, E, and F in fixed-cell ELISA and cell culture immunofluorescent assays against 5 reference and 9 field strains of TGEV and 2 US strains (ISU-1 and ISU-3) of porcine respiratory coronavirus (PRCV). Subsites A, E, and F were conserved on all TGEV and PRCV strains examined. The 2 MAb to subsite V, 8G11 and 75B10, reacted only with the Miller TGEV strains (M5C, M6, and M60), except that 75B10 also recognized field strain U328. The MAb 11H8 did not react with 4 field strains or the Purdue strains of TGEV. The 2 MAb to subsite D reacted with all TGEV strains examined, but not with 2 US PRCV strains, 2 European PRCV strains, 1 feline infectious peritonitis virus strain, and 1 canine coronavirus strain. Because of this specificity for TGEV, but not PRCV, these latter 2 subsite D MAb may be useful for the development of competition ELISA to differentiate serologically between TGEV and PRCV infections in swine, similar to the currently used European subsite D MAb. 相似文献
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猪圆环病毒2型江苏分离株的遗传进化分析 总被引：1，自引：0，他引：1
采用PCR方法扩增了15个猪圆环病毒2型（PCV 2）江苏分离株的基因组DNA,以这些毒株的ORF2核苷酸序列进行遗传进化分析。经序列比较发现,所有分离株均属于2b基因群,其中7株为1A/1B亚群、8株为1C亚群;毒株间核苷酸同源性为93.6%~100%,所编码的Cap蛋白氨基酸同源性为92.3%~100%。PCV 2江苏分离株Cap蛋白的主要变异区域为53~90、121~151和190~210位氨基酸;R59、R89、S90、S121、T134、S169、A190、E210为1A/1B亚群分离株的特征氨基酸,而F8、I53、N68、L89、T90、T121、N134、R169、D210、I215、K234则是1C亚群分离株的特征氨基酸。 相似文献
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我国近期7株猪瘟流行野毒E2基因变异研究 总被引：1，自引：0，他引：1
应用RT PCR 和nPCR 扩增了7 株国内近期(2001 年-2003 年)流行的猪瘟野毒E2 基因,分别克隆至pGEM T 载体并对其进行了核苷酸序列测定及氨基酸序列推导,同时将其与C 株、Alfort 株、Brecsia 株进行了同源性比较及遗传进化分析,构建了CS FV的遗传发生树,并对E2 结构与功能进行了分析。所测7株野毒均包括完整的信号肽序列及部分跨膜区在内的1 170 bp,与C株、Alfort株、Brescia 株核苷酸序列同源性分别为91.6%~94.5%、89.2%~92.7%、85.9%~89.3%,氨基酸同源性分别为91.2%~95.8%、88.9%~92.0%、84.0%~90.1%;而7株野毒之间的差异很小,其核苷酸序列同源性为95.8%~99.7%,氨基酸同源性为96.3%~99. 1%。所绘制的遗传发生树分为2个组群,所测得7 株流行野毒均属于第1 群,而且可分为两亚群,与C 株在同一亚群。同时对主要抗原区氨基酸位点变异进行了分析,对其抗原决定簇的变异情况进行了推测。 相似文献
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A panel of four monoclonal antibodies (MAbs) was evaluated, using a hemagglutination-inhibition test, for its ability to subtype 76 isolates of Haemophilus paragallinarum. The results of the MAb reactions were compared with the results of both the Page and Kume serotyping schemes (the serovars of the Page scheme correspond to the serogroups of the Kume scheme). One MAb (E5C12D10) was raised against a Page serovar A strain and the remaining MAbs (F2E6, D6D8D5, and B3E6F9) against a Page serovar C strain. Six different reaction patterns were found among the 76 isolates of H. paragallinarum. There was total correlation between the MAb reaction pattern and the Page scheme, and thus the Kume scheme, to the serogroup level. All 19 Page serovar A (= Kume serogroup A) strains reacted only with MAb E5C12D10, whereas all five Page serovar B (= Kume serogroup B) strains failed to react with any of the MAbs. All 52 remaining strains were Page serovar C (= Kume serogroup C), and all failed to react with MAb E5C12D10 but showed varying reaction patterns with the three other MAbs. Although the MAbs recognized four subdivisions within Kume serogroup C, these subdivisions differed from the four Kume C serovars. This panel of MAbs can be used to assign isolates of H. paragallinarum to either Page serovars or Kume serogroups. Although the subdivisions recognized by the MAbs within the Page serovar C strains do not correspond to the Kume serovars, they may be useful in epidemiological applications. 相似文献
17.
Two new monoclonal antibodies (MAbs), D6D8D5 and B3E6F9, both directed against Haemophilus paragallinarum serovar C hemagglutinating (HA) antigen, were produced, and characteristics of the MAbs were compared with those of the previously described MAb F2E6 in dot-blot and hemagglutination-inhibition (HI) tests using two representative H. paragallinarum strains each of serovars A, B, and C strains and 55 Japanese serovar C field isolates. MAb D6D8D5 and MAb F2E6 reacted with all serovar C strains and field isolates in the dot-blot test. However, MAb D6D8D5 showed various degrees of inhibition of the HA activity of field isolates. In the enzyme-linked immunosorbent assay-competition test, MAb D6D8D5 did not compete with MAb F2E6. MAb B3E6F9 reacted with strain S1, serovar C but not with strain Modesto, serovar C in both dot-blot and HI tests. Three out of 55 field isolates did not react with MAb B3E6F9. Neither MAb reacted with the serovar A and B strains. 相似文献
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探讨不同禽源大肠埃希菌中喹诺酮类药物的耐药情况及耐药基因gyrA的分布和突变特征。采用K-B药敏纸片法、gyrA基因的PCR扩增,对9株大肠埃希菌进行喹诺酮类药物试验,并将gyrA基因的PCR产物测序,对测序结果采用DNA MAN、DNA Star、MEGA6等软件分析。药敏试验结果表明,C1、C2、C3菌株对左氧沙星、氧氟沙星、环丙沙星、诺氟沙星敏感,D1、D2、D3、B1、B2和B3菌株对左氧沙星、氧氟沙星、环丙沙星、诺氟沙星均表现为耐药和中介;gyrA基因的测序结果表明,除B1菌株有1处核苷酸突变位点和B2菌株有14处核苷酸突变位点;B2菌株gyrA基因的氨基酸突变发生在87位Ile→Val替代、101位Leu→Met替代、102位Ala→Ser替代、129位Lys→Gln替代。9株禽源大肠埃希菌的同源性和进化树分析表明,不同禽源耐氟喹诺酮类药物的大肠埃希菌菌株中B2菌株gyrA基因与其他9株菌株相比,同源性在90%左右,进化树不在一个分支上,研究中的B2菌株将为大肠埃希菌的氟喹诺酮类耐药机制的研究提供候选菌株。 相似文献
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Rice CC Kruger JM Venta PJ Vilnis A Maas KA Dulin JA Maes RK 《Journal of veterinary internal medicine / American College of Veterinary Internal Medicine》2002,16(3):293-302
Feline caliciviruses (FCVs) are potential etiologic agents in feline idiopathic lower urinary tract disease (I-LUTD). By means of a modified virus isolation method, we examined urine obtained from 28 male and female cats with nonobstructive I-LUTD, 12 male cats with obstructive I-LUTD, and 18 clinically healthy male and female cats. All cats had been routinely vaccinated for FCV. Two FCVs were isolated; I (FCV-U1) from a female cat with nonobstructive I-LUTD, and another (FCV-U2) from a male cat with obstructive I-LUTD. To determine the genetic relationship of FCV-U1 and FCV-U2 to other FCVs. capsid protein gene RNA was reverse transcribed into cDNA, amplified, and sequenced. Multiple amino acid sequence alignments and phylogenetic trees were constructed for the entire capsid protein, hypervariable region E, and the more conserved (nonhypervariable) regions A, B, D, and F. When compared to 23 other FCV isolates with known biotypes, the overall amino acid sequence identity of the capsid protein of FCV-U1 and FCV-U2 ranged from 83 to 96%; identity of hypervariable regions C and E ranged from 58 to 85%. Phylogenetically, FCV-U1 clearly separated from other FCV strains in phenograms based on nonhypervariable regions. In contrast, FCV-U2 consistently segregated with the Urbana strain in all phenograms. Clustering of isolates by geographic origin was most apparent in phenograms based on nonhypervariable regions. No clustering of isolates by biotype was apparent in any phenograms. Our results indicate that FCV-UI and FCV-U2 are genetically distinct from other known vaccine and field strains of FCV. 相似文献