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1.
构建了山羊肝脏cDNA文库，采用平板裂解法提取噬菌体DNA，以此为模板用所设计的引物以PCR法扩增出μ-calpain激活蛋白UK114基因，并克隆到pGEM-Teasy载体。序列分析表明，UK114 cDNA包括起始密码子和终止密码子在内全长共计1017bp，5＇非编码区长为39bp，3＇非编码区长为567 bp，编码区长411 bp，编码137个氨基酸序列。与GenBank中Colombo等所得UK114基因比较表明：在5’非编码区，UK114为102 bp，克隆的UK114为39 bp，且二者仅有9个核苷酸序列是相同的；紧接着是起始密码子ATG，然后是一个411bp的阅读框（40nt-450at），编码137个氨基酸，理论分子量约为15ku，二者在编码区仅有1个bp不同，为无义突变；在3’非编码区为552 bp，所克隆的UK114为567 bp，二者在此区域有57个核苷酸序列是不同的：UK114为polyA，所克隆的是不同的核苷酸。二者的同源性为91％，突变的86个核苷酸中都为无义突变，开放阅读框中仅有一个核苷酸突变。 相似文献
2.
《畜牧与兽医》2019,(12):9-14
采用PCR测序技术对梅山猪线粒体基因组进行测序,并对其特征进行分析。结果表明,梅山猪线粒体基因组序列全长16 730 bp,包含13个蛋白编码基因,2个rRNA,22个tRNA和1个非编码控制区(D-loop);蛋白编码基因起始密码子分别为ATA(ND2、ND3和ND5),GTG(ND4L),剩余均为ATG,终止密码子分别为TAG(ND1、ND2)、AGA(CytB)、TAA(COX1、ATP8、ATP6、ND4L、ND5和ND6),其余为不完全密码子T;22个tRNA中除tRNA-Ser(AGY)缺少DHU臂外,其余tRNA均可形成典型三叶草结构;线粒体控制区全长1 294 bp,包括26个串联重复序列(CGTGCGTACA),以及TAS-3、TAS、OH、CSB-1、CSB-2、CSB-3和LSP等保守框。采用MEGA X最大似然法基于线粒体全序列构建进化树,梅山猪(小型)与陆川猪最为相近。 相似文献
3.
野桑蚕肌球蛋白轻链2基因(MLC2)的克隆和序列分析 总被引：2，自引：0，他引：2
利用反转录聚合酶链式反应(RT-PCR)和cDNA末端快速扩增(RACE)技术克隆了野桑蚕间接飞行肌(in-direct flight muscle,IFM)的肌球蛋白轻链2(myosin light chain2,MLC2)基因(GenBank登录号:EU332913),其cDNA序列全长979 bp,包括63 bp的5′端非翻译区序列(5′-UTR)、603 bp的开放读码框(ORF)、终止密码子TAA和310bp的3′端非翻译区序列(3′-UTR)。克隆该基因的内含子序列并分析基因结构表明,该基因包括3个外显子和2个内含子,编码201个氨基酸,预测蛋白质分子质量约22.0 kD,等电点4.67。用在线软件SMART分析显示,野桑蚕MLC2蛋白有2个Ca2+结合基序(EFh)结构域,可以结合Ca2+,属于肌钙蛋白C超家族成员,并且含有保守的可以磷酸化的氨基酸残基,有可能具有磷酸化过程,参与肌动球蛋白ATPase活性的调节。 相似文献
4.
对我国鸡痘病毒 ( FPV) 2 82 E4株基因组 2 .9kb Bam HI片段进行了序列测定与分析。结果表明 ,该片段全长 2 92 3 bp,A T含量为 72 .0 8%,含 6个完整的开放读码框架 ( ORF)和 2个不完整的 ORF,最大的ORF所编码多肽的相对分子质量为 2 4 60 0。在 2个 ORF的上游存在痘苗病毒晚期启动子的保守序列TAAAT,在 6个 ORF的下游和 2个 ORF的编码区内存在痘苗病毒早期转录终止信号 T5NT。把该片段的核苷酸序列和每个 ORF所编码的氨基酸序列分别对 EMBL核酸序列库和 SWISS-PROT蛋白质序列库进行了同源性搜索 ,未发现同源性片段 相似文献
5.
在家蚕丝腺cDNA文库测序过程中,发现一个编码家蚕泛素结合酶的EST序列,利用3′RACE方法克隆了一个新的家蚕泛素结合酶基因cDNA全长序列,命名为BmUCE2 I(GenBank登录号为DQ219874)。家蚕BmUCE2 I基因全长cDNA由465 bp的开放阅读框序列(ORF)、97 bp的5′端非翻译区序列(5-′UTR)和237 bp的3′端非编码区序列(3-′UTR)组成,其编码的154个氨基酸与其他真核生物间具有较高的同源性。利用BmUCE2 I的EST片断作探针,通过筛选家蚕噬菌体基因组文库,获得了家蚕BmUCE2 I基因组序列和5′调控序列。BmUCE2 I基因由4个外显子和3个内含子组成,在5′端上游调控区域没有类似TATA盒元件,但在-219~-268 bp的区域存在一个50bp的启动子序列,此外还存在CF2-Ⅱ、FTZ、DFD、BRCZ2、DL、STAT、PRD-HD等多个转录因子结合位点。家蚕泛素结合酶新基因的克隆、基因结构及5′调控区的分析为进一步研究泛素蛋白水解酶复合通路相关基因的调控规律提供了重要依据。 相似文献
6.
为了获得驯鹿β-防御素reBD-1全长cDNA序列,根据已获得的reBD-1cDNA的已知序列设计1条序列特异性引物作为上游引物,反转录引物中的部分序列即3′接合器引物作为下游引物,克隆reBD-1cDNA的3′末端序列。另外,采用反向嵌套PCRRACE法,根据reBD-1cDNA的已知序列,设计1条5′末端磷酸化的特异性反转录引物和2对特异性反向嵌套PCR引物,首先进行反转录(RT),然后将mRNA反转录成的cDNA进行环化,最后进行反向嵌套巢式PCR,克隆reBD-1cDNA的5′末端序列。结果成功的克隆出了reBD-1cDNA的3′和5′末端序列,从而得到372bp的reBD-1cDNA全序列,其中包含44bp5′非翻译区(UTR)、192bp的开放读码框(ORF)、终止密码子TAA、118bp的3′UTR和poly(A)15。reBD-1cDNA全序列的获得为进一步研究其基因结构、基因表达和基因功能奠定了基础。 相似文献
7.
为进一步研究驯鹿伊防御素-1（reBD-1）基因的分子结构，利用已克隆出的reBD-1部分片段，设计了1条特异性上游引物，并以反转录引物中的部分序列即3sites Adaptor Primer作为下游引物，采用3’RACE技术成功克隆了reBD-1 cDNA的3’末端序列。通过与已知reBD-1片段拼接，得到了192bp的完整开放读码框（ORF）、终止密码子TAA、118bp的3’非翻译区（3’UTR）以及poly（A）1S,其中ORF编码具有64个氨基酸残基的reBD-1前原肽。 相似文献
8.
促卵泡激素β亚基(FSHβ)基因是动物繁殖性状的一个重要候选基因,对鹅产蛋量具有重要的调节作用。本研究以鹅垂体组织总RNA反转录的cDNA为模板,分别采用RT-PCR和RACE技术扩增鹅FSHβcDNA序列,包含:16 bp 5′UTR,396 bp开放阅读框(ORF)和3′端非翻译区2个不同的剪接体,其大小分别为518 bp和780 bp。经生物信息学软件分析,发现鹅FSHβ基因编码的蛋白为亲水蛋白,且存在信号肽序列切割位点,则推测其为分泌蛋白。本研究首次成功获得了鹅FSHβ基因的cDNA全长序列并进行了分析,可为全面解析鹅FSHβ基因的分子结构及功能提供一定的参考。 相似文献
9.
白三叶(Trifolum repens)化感物质中含有多种化学成份,主要含有酚类与萜类及黄酮类物质,而查尔酮合成酶(CHS)是类黄酮途径的第一限速步骤,对于黄酮类物质的合成至关重要。本试验从白三叶中克隆了CHS基因cDNA序列,并对白三叶CHS基因进行了生物信息学分析。结果表明克隆到的CHS基因全长cDNA序列1473bp,其中包含了1170bp的开放阅读框(ORF),起始密码子为ATG,终止密码子为TAA,103bp的5′UTR和200bp 3′UTR编码389氨基酸。且白三叶的CHS基因与同属于豆科的苜蓿CHS、大豆CHS、鹰嘴豆CHS和豌豆CHS亲缘关系最近,处于同一分支,这与植物分类相一致。 相似文献
10.
分离和鉴定镰形扇头蜱（Rhipicephalus haemaphysaloides,Rh）新基因,为防治镰形扇头蜱提供药物靶标或候选疫苗。从镰形扇头蜱唾液腺抑制消减杂交文库中筛选了一条编码微管蛋白的基因片段,通过3＇-RACE的方法得到全长序列;采用生物信息学技术等对该cDNA进行分析。获得1个镰形扇头蜱新基因-微管蛋白基因（RhM1）,全长680bp,开放阅读框（ORF）全长537bp,编码179个氨基酸。编码蛋白的理论分子量为20KDa,等电点为4.71;抗原表位可能位于cDNA序列N末端第18~25氨基酸处。 相似文献
11.
猪繁殖与呼吸综合征病毒蛋白质研究进展 总被引：2，自引：1，他引：1
猪繁殖与呼吸综合征病毒(PRRSV)是一种折叠的正义RNA病毒,属于动脉炎病毒科(Arteriviridae),尼多病毒目(Nidovirales)。除了动脉炎病毒科,尼多病毒目还包括冠状病毒科(Coronaviruses)。15.1~15.2 kb长的PRRSV基因组通过互相重叠的开放性阅读框编码蛋白质。ORF1a翻译过程中产生pp1a多聚蛋白。ORF1b表达产生了 pp1ab多聚蛋白。pp1a和pp1ab经病毒蛋白酶处理后又生成了14个非结构蛋白。一些非结构蛋白为蛋白酶(NSP1、NSP1β、NSP2和NSP4)、RNA-依赖性RNA聚合酶(NSP9)、解旋酶(NSP10)和核酸内切酶(NSP11)。ORFs2-5编码GP2-GP5,ORF6编码M,ORF7编码N蛋白。ORF2b完全包括在ORF2内,表达小的非糖基化E或2b蛋白。相当一部分的囊膜蛋白是nidoviruses所特有的,所有的结构蛋白都是感染所必需的。 相似文献
12.
猪繁殖与呼吸综合征病毒辽宁分离株ORF5基因的克隆与序列分析 总被引：1，自引：1，他引：0
本试验以辽宁地区某猪场猪繁殖与呼吸综合征(porcine reproductive and respiratory syndrome,PRRS)发病猪病料为材料,采用RT-PCR方法特异性扩增编码猪繁殖与呼吸综合征病毒(porcine reproductive and respiratory syndrome virus,PRRSV)GP5蛋白的ORF5基因全长cDNA,结果该分离株ORF5基因编码区长603bp,可编码200个氨基酸。与美洲型代表株VR2332、欧洲型代表株LV进行同源性比较,氨基酸同源性分别为89.5%和55.7%。推测该辽宁分离株属于美洲型。 相似文献
13.
PRRSV, the virus 总被引：25，自引：0，他引：25
Meulenberg JJ 《Veterinary research》2000,31(1):11-21
Porcine reproductive and respiratory syndrome virus (PRRSV) is a positive-strand RNA virus that belongs to the Arteriviridae family. PRRSV grows in primary alveolar macrophages and in monkey kidney cell lines. The genomic RNA is approximately 15 kb. The genome encodes the RNA replicase (ORF1a and ORF1b), the glycoproteins GP2 to GP5, the integral membrane protein M, and the nucleocapsid protein N (ORFs 2 to 7). A comparison of nucleotide sequences of different strains indicates that European and North American strains represent two distinct antigenic types. Various PRRSV-specific monoclonal antibodies and recombinant structural proteins have been produced. Well-defined PRRSV mutants can be generated with the recently developed infectious cDNA clone of PRRSV. 相似文献
14.
Lactate dehydrogenase C (LDH-C) has been reported to play a role in the energy metabolism of mammal spermatozoa. However, the functions and expression patterns of LDH-C still remain unclear. In order to elucidate the functions and expression patterns of LDH-C, we cloned the cDNA of yak LDH-C. Total RNA was extracted from yak testes and reverse transcribed and amplified by PCR. The full length open reading frame (ORF) of LDH-C and its five splice variants were obtained. The full length ORF contained 999 bp encoding a 332-amino-acid protein that showed 100% identity with bovine LDH-C. Compared with the full length ORF of LDH-C, the five variants used the same start codon as the full length ORF and encoded 5 putative proteins. In detail, variants 1 (missing the coding sequence of exon 6 and 7) and 2 (missing the coding sequence of exon 7) bear the entire nicotinamide-adenine dinucleotide (NAD) binding domain and an active site. Variants 3 (missing the first 42 nuleotides of exon 4) and 4 (missing the coding sequences of exons 5, 6 and 7) lack part of the NAD binding domain but contained the entire active site. Variant 5 (missing the coding sequence of exons 4 and 7) lacks a large part of the NAD binding domain and the entire active site. Native polyacrylamide gel electrophoresis was performed to determine if the splice variants can be translated into proteins. However, native PAGE detected no specific bands from yak testes and bovine spermatozoa. This study suggests the alternative splicing of LDH-C is ubiquitous in bovine testes and might be involved in regulation of LDH-C expression. The findings also help to elucidate the functions of LDH-C. 相似文献
15.
高羊茅腺苷甲硫氨酸脱羧酶基因FaSAMDC的克隆与差异表达分析 总被引：2，自引：0，他引：2
在进行高羊茅光敏色素C基因5′端克隆时,筛选到腺苷甲硫氨酸脱羧酶基因的5′端序列,根据5′端序列设计引物,扩增出该基因的3′端,拼接得到高羊茅腺苷甲硫氨酸脱羧酶基因全序列,命名为FaSAMDC(GenBank登录号:HQ606139),利用实时荧光定量PCR技术研究FaSAMDC基因在长日照与短日照条件下昼夜24 h的表达差异,为进一步揭示不同光周期调控FaSAMDC基因的表达奠定理论基础。FaSAMDC的cDNA全长1 964 bp,具有微型上游阅读框、小型上游阅读框和主阅读框3个开放阅读框,分别位于226～234,234～380和555～1 742 bp,微型上游阅读框和小型上游阅读框存在1个碱基重叠,主阅读框编码395个氨基酸,含有保守功能域:酶原剪切位点功能域和SAMDC蛋白快速降解有关的PEST功能域。对编码蛋白氨基酸序列的同源性分析表明,FaSAMDC与其他单子叶植物SAMDC蛋白的亲缘关系较近。在长日照和短日照处理条件下,FaSAMDC都具有3个表达峰。短日照处理条件下的表达峰比长日照处理条件下的表达峰早几个小时,但峰高低于长日照条件。由此说明,FaSAMDC基因的表达受光周期调控,与生物钟控制的昼夜节律有关。 相似文献
16.
Zhou F Liang S Chen AH Singh CO Bhaskar R Niu YS Miao YG 《Veterinary research communications》2012,36(2):99-105
Porcine reproductive and respiratory syndrome (PRRS) is now considered to be one of the most important diseases in countries with intensive swine industries. The two major membrane-associated proteins of porcine reproductive and respiratory syndrome virus (PRRSV), GP5 and M (encoded by ORF5 and ORF6 genes, respectively), are associated as disulfide-linked heterodimers (GP5/M) in the virus particle. In this study, we designed 5 of the small hairpin RNAs (shRNAs) targeting the GP5 and M gene of PRRSV respectively, and investigated their inhibition to the production of PRRSV. The highest activity displayed in shRNAs of the ORF6e sequence (nts 261-279), which the inhibition rate reached was 99.09%. The result suggests that RNAi technology might serve as a potential molecular strategy for PRRSV therapy. Furthermore, the transgenic Marc-145 cell line of piggyBac transposon-derived targeting shRNA interference against PRRS virus was established. It presented stable inhibition to the replication and amplification of PRRS. The work implied that shRNAs targeting the GP5 and M gene of PRRSV may be used as potential RNA vaccines in vivo, and supplied the screening methods of transformed pig embryonic fibroblast which are prerequisite for the disease-resistant transgenic pigs to PRRS. 相似文献
17.
18.
Genetic and immunobiological diversities of porcine reproductive and respiratory syndrome genotype I strains 总被引：1，自引：0，他引：1
Darwich L Gimeno M Sibila M Diaz I de la Torre E Dotti S Kuzemtseva L Martin M Pujols J Mateu E 《Veterinary microbiology》2011,150(1-2):49-62
Genetic diversity of porcine reproductive and respiratory syndrome virus (PRRSV) has been based on ORF5/GP5 and ORF7/N protein variations. Complete viral genome studies are limited and focused on a single or a few set of strains. Moreover, there is a general tendency to extrapolate results obtained from a single isolate to the overall PRRSV population. In the present study, six genotype-I isolates of PRRSV were sequenced from ORF1a to ORF7. Phylogenetic comparisons and the variability degree of known linear B-epitopes were done considering other available full-length genotype-I sequences. Cytokine induction of all strains was also evaluated in different cellular systems. Non structural protein 2 (nsp2) was the most variable part of the virus with 2 out of 6 strains harboring a 74 aa deletion. Deletions were also found in ORF3 and ORF4. Phylogenetic analyses showed that isolates could be grouped differently depending on the ORF examined and the highest similarity with the full genome cluster was found for the nsp9. Interestingly, most of predicted linear B-epitopes in the literature, particularly in nsp2 and GP4 regions, were found deleted or varied in some of our isolates. Moreover, 4 strains, those with deletions in nsp2, induced TNF-α and 3 induced IL-10. These results underline the high genetic diversity of PRRSV mainly in nsp1, nsp2 and ORFs 3 and 4. This variability also affects most of the known linear B-epitopes of the virus. Accordingly, different PRRSV strains might have substantially different immunobiological properties. These data can contribute to the understanding of PRRSV complexity. 相似文献
19.
The porcine reproductive and respiratory syndrome virus (PRRSV) GP4 and GP5 proteins are two membrane-associated viral glycoproteins that have been shown to induce neutralizing antibodies. In the present study, the host cell gene expression profiles altered by the GP4 and GP5 proteins were investigated by the use of DNA microarrays. Sublines of Marc-145 and HeLa cells were established by stable transfection with open reading frame (ORF)4 and ORF5 of PRRSV, respectively, and differential gene expressions were studied using microarray chips embedded with 1718 human-expressed sequence tags. The genes for protein degradation, protein synthesis and transport, and various other biochemical pathways were identified. No genes involved in the apoptosis pathway appeared to be regulated in GP5-expressing cells. The microarray data may provide insights into the specific cellular responses to the GP4 and GP5 proteins during PRRSV infection. 相似文献
20.
家蚕孵化酶样基因BmHEL的原核表达及蛋白纯化与功能鉴定 总被引：1，自引：1，他引：0
孵化酶(hatchingenzyme,HE)是后生动物卵孵化过程中起关键作用的一类蛋白酶。在已完成全长967bp的家蚕孵化酶样基因(BmHEL)克隆及其转录特性分析的基础上,研究了该基因在原核表达系统的表达、产物纯化及其对家蚕卵壳的降解功能。以全长BmHEL质粒DNA为模板,用PCR方法分别获得了该基因的开放阅读框(BmHELORF,885bp)、缺失信号肽编码区(BmHELa,834bp)和推测成熟酶功能编码区(BmHELb,624bp)的3个片段,并亚克隆入原核表达载体pET28a(+),在大肠杆菌(E.coli)BL21中进行表达。表达的3种外源蛋白均以包涵体形式存在,获得含有6×His-Tag标签的融合蛋白,其分子质量分别为33.4、31.8、24.0kD。通过Westernblot方法检测到了用Ni-NTA亲和层析柱纯化的目的蛋白。纯化复性后的3种孵化酶对家蚕卵壳底物有一定降解活性,其中BmHELORF的活性最高,BmHELb的活性最低。在pH7.1反应条件下3种酶的活性比pH9.5时高。研究结果在蛋白质水平上进一步证实家蚕孵化酶样蛋白参与了蚕卵孵化这一重要生命过程。 相似文献