首页 | 本学科首页   官方微博 | 高级检索  
相似文献
 共查询到20条相似文献，搜索用时 15 毫秒
1.
Goats (Capra hircus) were domesticated in the Fertile Crescent and propagated all over the world. The Silk Road through the Eurasian Steppe belt is a possible propagation route for domestic goats to Central Asia. Kazakhstan is in close geographical proximity to domestication centers and covers the majority of the Eurasian Steppe belt. In this study, we examined the genetic diversity and phylogeographic structure of Kazakhstani goats. The mtDNA sequences of 141 Kazakhstani goats were categorized into haplogroups A, C, and D, of which haplogroup A was predominant (97%), whereas haplogroups C and D were detected at low frequencies (1.4% each). The Kazakhstani haplotypes C were thzen categorized into Asian mtDNA type. Sequence analysis of the SRY gene on the Y‐chromosome in 67 male Kazakhstani goats revealed two haplotypes: Y1A (64%) and Y2A (36%). Analysis of the distribution of mtDNA haplogroups and SRY haplotypes from Eurasia and Africa demonstrated genetic similarity among animals from Kazakhstan, Mongolia, and Northwest China located on the Eurasian Steppe belt. These phylogeographic results suggested that the Eurasian Steppe belt was an important propagation route for goats to Central Asia.  相似文献   

2.
黄河下游同域山羊种群mtDNA D-环多态性及系统发育   总被引：2，自引：0，他引：2  
对黄河下游7个山羊种群共59个个体的mtDNA D-环533 bp序列进行分析,发现59个多态位点,其中单一多态位点21个,简约信息位点38个,分别占全序列的11.7%、3.94%和7.13%。确定了37种单倍型,崂山奶山羊1个个体还发现了1处5碱基的缺失。各群体单倍型多样度为0.785 7~0.969 7,核苷酸多样度为1.27%~1.73%,遗传多样性较丰富。构建系统发育树将37种单倍型分为2个分支,由此推断黄河下游山羊资源至少具有2个母系起源,角猾羊与A类型聚为1支,7个群体具有角猾羊起源,未发现捻角山羊对7个群体有贡献的证据。错配分析表明,A类型经历过群体扩张,B类型未经历过群体扩张。并通过遗传距离分析了各群体的遗传分化。  相似文献   

3.
In the present study, we used morphological and genetic analyzes to distinguish bones of domestic boars from those of wild boars. We analyzed 65 Sus bones (cranium, mandible and teeth) stored in three research institutes in Vietnam and in a village in Vietnam. Based on comparison of bucco‐lingual measurements of mandibular parts, the 58 specimens were morphologically classified into two size groups: a large bone group and a small bone group. Analysis of 572‐bp mitochondrial DNA (mtDNA) sequences indicated that the large bones had genetic links to wild boar lineage including Ryukyu, Taiwan and Korean wild boars, and that the small bone group was closely related to East Asian domestic pigs. The phylogenetic analysis and parsimonious networks constructed among mtDNA haplotypes belonging to Ryukyu wild boar lineage showed that the Ryukyu wild boar is closely related to the Vietnamese wild boars, and uniquely miniaturized on their islands after the Ryukyu archipelago became isolated from the Asian continent.  相似文献   

4.
Biochemical polymorphisms and major mtDNA haplotypes in Bergschaf breeds and Waldschaf as contribution to descent of domestic sheep Morphological similarities between domestic sheep and certain subspecies of Ovis ammon L. 1758 are not necessarily proof of the domestication of a specific subspecies, as crossbreeding of foreign wild sheep populations of different genetic origin with domestic sheep could have led to observed similarities. The maternal inherited mitochondrial genome offers the opportunity to trace modern domestic sheep breeds across numerous generations to presumptive wild ancestors regardless of domestication induced morphological changes and crossbreeding, etc. An investigation based on haplotype specific HinfI – mtDNA fragments and protein polymorphisms in different mountain sheep breeds thought to represent maternal descendants of the Torfschaf as well as in the Waldschaf breed, which belongs to the Zaupel group, were used to help clarify if the major European mtDNA haplotype B was associated with the Torfschaf (Ovis aries palustris RÜTIMEYER 1862), the oldest domesticated sheep in Europe. Samples derived from Steinschaf of the Slovenian and Bavarian type, white and brown varieties of Bergschaf, Brillenschafe from Bavaria and Villnösserschafe showed haplotype B. A single investigated ram of the Bergamasker breed was of the same haplotype. mtDNA haplotype A was detected in more than 50% of the Waldschaf animals. This demonstrates that not all sheep breeds derived from Zaupelschaf are descendants of the same wild ancestor. Within haemoglobin (HBB) the variants HBBA and HBBB occur in a well balanced pattern in all breeds investigated, while the frequency of HBBA was high (0.857) in the brown Bergschaf. Steinschafe of Bavarian type were polymorphic at the CA2‐locus and Waldschafe at the GC‐locus. At the transferrin locus, differences in the occurrence and frequency of the different alleles could be demonstrated between populations. Relationships between Torfschaf, Kupferschaf, Steinschaf, Zaupelschaf, Bergamasker and European Mouflon are discussed. It is likely that the domesticated ancestors of most European sheep can be traced from the Torfschaf to an as yet unknown wild sheep (Ovis ammon) subspecies in Asia.  相似文献   

5.
To explore the genetic diversity and origin for genetic resource protection of Huili Black goat, the mitochondrial DNA (mtDNA) D-loop was investigated. mtDNA D-loop sequences of 41 goats were analyzed by PCR, sequencing techniques, and biological information and the phylogenetic trees were constructed. The mtDNA sequences of the Huili Black goat ranged from 1211 to 1213 bp, and 2 sequences were 1211 bp, 29 sequences 1212 bp, and 10 sequences 1213 bp. The content of A+T (60.1%) was higher than one of G+C (39.9%). There were 9 haplotypes, and the haplotype diversity was 0.842+0.00368. The nucleotide diversity was 0.01542+0.00034. The phylogenetic analysis showed that Huili Black goat was distributed in a branch, and were closed to Jianchang Black goat, Chengdu Ma goat, Jintang Black goat, Guizhou White goat, Guizhou Black goat, but they were less related to Capra falconeri. Huili Black goats had rather abundant genetic diversity, and were greatly affected by other goat breeds in history.  相似文献   

6.
Yunnan as a frontier zone that connects China with South and Southeast Asia, has 11 well‐recognized goat breeds. However, the knowledge about maternal origins, population structure and demographic history of Chinese indigenous goats from Yunnan is limited. In this study, we analysed a 481‐bp fragment of first hypervariable segment (HVSI) of the mitochondrial DNA (mtDNA) control region sequences of 749 individuals from 10 Yunnan indigenous goat breeds, of which 556 sequences were newly determined. There were 110 polymorphic sites that defined 158 haplotypes among all sequences. The haplotype and nucleotide diversity of these breeds ranged from 0.782 ± 0.079 to 0.982 ± 0.015 and from 0.028 ± 0.003 to 0.043 ± 0.005, respectively. Phylogenetic analysis identified two lineages A and B, of which the lineage A had higher frequency (68.1%) and distributed in all Yunnan breeds. We combined previously reported sequences with our sequences belonging to the lineage B and detected two subclades B1 and B2, in which the B1 subclade shared individuals from Eastern Asia, Southeast Asia and Southern Asia. Given higher level of diversity and more unique haplotypes, the B2 subclade probably originated from Southwestern China. The haplotype network, analysis of molecular variance (AMOVA) and a Mantel test revealed no significant phylogeographic structuring among Yunnan goat breeds. This can be explained by high gene flow and genetic admixture among these breeds from different geographic regions in Yunnan. Additionally, both the lineages A and B reflected different demographic histories. This study will provide a scientific basis for the conservation and utilization of Yunnan indigenous goats.  相似文献   

7.
Consistent with a tentative diagnosis of neuronal ceroid lipofuscinosis (NCL), autofluorescent cytoplasmic storage bodies were found in neurons from the brains of 2 related Shiba Inu dogs with a young‐adult onset, progressive neurodegenerative disease. Unexpectedly, no potentially causal NCL‐related variants were identified in a whole‐genome sequence generated with DNA from 1 of the affected dogs. Instead, the whole‐genome sequence contained a homozygous 3 base pair (bp) deletion in a coding region of HEXB. The other affected dog also was homozygous for this 3‐bp deletion. Mutations in the human HEXB ortholog cause Sandhoff disease, a type of GM2 gangliosidosis. Thin‐layer chromatography confirmed that GM2 ganglioside had accumulated in an affected Shiba Inu brain. Enzymatic analysis confirmed that the GM2 gangliosidosis resulted from a deficiency in the HEXB encoded protein and not from a deficiency in products from HEXA or GM2A, which are known alternative causes of GM2 gangliosidosis. We conclude that the homozygous 3‐bp deletion in HEXB is the likely cause of the Shiba Inu neurodegenerative disease and that whole‐genome sequencing can lead to the early identification of potentially disease‐causing DNA variants thereby refocusing subsequent diagnostic analyses toward confirming or refuting candidate variant causality.  相似文献   

8.
The 7000‐rad INRA‐University of Minnesota porcine Radiation Hybrid panel was used to localize the FGFR2 gene on Sus scrofa chromosome 14 (SSC14). An insertion/deletion mutation of approximately 240 bp was detected in the porcine FGFR2 gene. This mutation consists of a repeat motif of 48 bp. In a short and long variant of this polymorphism, the motif was repeated either six or 11 times. The mutation was shown to follow a Mendelian mode of inheritance in 10 families including 48 pigs of Large White × Duroc origin.  相似文献   

9.
利用线粒体D-loop区分析家鸭品种遗传多态性与系统进化   总被引：17，自引：2，他引：17  
通过线粒体DNA控制区的结构和多态性来研究我国家鸭的遗传多态性与系统进化。利用DNA测序技术测定了我国9个家鸭品种106个个体线粒体DNA控制区多变序列。序列分析结果显示:A、C、T、G碱基的平均含量分别为25.6%、33.3%、15.2%和25.9%。检测到34个变异位点,约占分析位点总数的5.1%,有转换、颠换、插入/缺失4种类型的变异。确定了31种单倍型,其中单倍型A7为家鸭的主体单倍型,品种之间有9种共享单倍型。9个家鸭品种单倍型多样度(Hd)平均为0.798,核苷酸多样度(Pi)平均为0.28%,单倍型多样度在荆江麻鸭中最高,其次是攸县麻鸭和恩施麻鸭,在文登黑鸭中最低。9个品种家鸭之间双参数距离范围为0.001 3~0.004 4。31个家鸭单倍型序列的系统发生分析表明,9个家鸭品种只有1个母系起源,没有发现东亚斑嘴鸭对9个家鸭品种起源有贡献的证据。  相似文献   

10.
High glycine–tyrosine keratin‐associated proteins (HGT‐KAPs) are predominantly present in the orthocortex of wool fibres. They vary in abundance in different wools and have been implicated in regulating wool fibre properties, but little is known about the functional roles of these proteins in the fibre matrix. In this study, we used polymerase chain reaction – single‐strand conformational polymorphism (PCR‐SSCP) analysis to screen for variation in a gene encoding the ovine HGT‐KAP6‐1 protein. We identified three gene variants (A, B and C). Variants A and B were similar to each other, with only three nucleotide differences occurring downstream of the coding sequence. However, variant C had a 57‐bp deletion that would notionally result in a loss of 19 amino acids in the protein. The presence of C was found to be associated with an increase in mean fibre diameter (MFD), fibre diameter standard deviation (FDSD), coefficient of variation of fibre diameter (CVFD) and prickle factor (percentage of fibres over 30 microns; PF). Sheep of genotype BC produced wool of greater MFD, FDSD and PF than sheep of genotypes AA, AB and BB. The CVFD was greater in the BC sheep than the AB sheep. The results suggest that variation in ovine KRTAP6‐1 affects wool fibre diameter‐associated traits and that the 57‐bp deletion in this gene would lead to coarser wool with greater FDSD, CVFD and PF.  相似文献   

11.
【目的】试验旨在对崂山奶山羊无角间性综合征(polled intersex syndrome,PIS)生殖缺陷基因进行定位并分析其基因型。【方法】以155只崂山奶山羊为研究对象,其中有角公羊9只、有角母羊34只、无角母羊29只、无角公羊47只、间性山羊36只。对36只间性山羊进行表型特征分析;以155只崂山奶山羊血液基因组DNA为材料进行遗传学性别鉴定;根据山羊基因组DNA的完整序列信息(RefSeq:NC_030808.1)分别设计PIS wt-2、PIS wt-3和PIS var-2 3对扩增引物,利用PCR方法验证山羊PIS区是否存在198 bp替换和108 bp缺失,并分析不同性状山羊PIS基因的基因型。【结果】36只间性山羊包括17只大阴蒂雄性假间性、12只拟雌性假间性和7只短阴茎间性这3种不同的表型,其性染色体均为XX;山羊PIS区是完全缺失的,且在129 427 003~129 427 905 bp区域并不存在198 bp替换和108 bp缺失;间性山羊的基因型全为突变纯合子,其突变类型为10.1 kb缺失/480 kb重复双突变;有角山羊的基因型全为野生型纯合子,没有发生10.1 kb缺失/480 kb重复;在检测的无角山羊中,有10只10.1 kb缺失/480 kb重复双突变纯合子公羊,其余无角山羊的基因型为10.1 kb缺失/480 kb重复单突变的杂合子。【结论】间性山羊的出现是由于10.1 kb的完全缺失和1个反向插入的约480 kb大小的重复片段导致,且间性性状仅发生在纯合子母羊中,而公羊的纯合缺失并不会出现间性性状。结果可为进一步揭示山羊无角性状的遗传机制以及培育崂山奶山羊无角新品系提供参考。  相似文献   

12.
Doré, E., Angelos, J. A., Rowe, J. D., Carlson, J. L., Wetzlich, S. E., Kieu, H. T., Tell, L. A. Pharmacokinetics of ceftiofur crystalline free acid after single subcutaneous administration in lactating and nonlactating domestic goats (Capra aegagrus hircus). J. vet. Pharmacol. Therap. 34 , 25–30. Six nonlactating and six lactating adult female goats received a single subcutaneous injection of ceftiofur crystalline free acid (CCFA) at a dosage of 6.6 mg/kg. Blood samples were collected from the jugular vein before and at multiple time points after CCFA administration. Milk samples were collected twice daily. Concentrations of ceftiofur and desfuroylceftiofur‐related metabolites were measured using high‐performance liquid chromatography. Data were analyzed using compartmental and noncompartmental approaches. The pharmacokinetics of CCFA in the domestic goat was best described by a one compartment model. Mean (±SD) pharmacokinetic parameters were as follows for the nonlactating goats: area under the concentration time curve0–∞ (159 h·μg/mL ± 19), maximum observed serum concentration (2.3 μg/mL ± 1.1), time of maximal observed serum concentration (26.7 h ± 16.5) and terminal elimination half life (36.9 h; harmonic). For the lactating goats, the pharmacokinetic parameters were as follows: area under the concentration time curve0–∞ (156 h·μg/mL ± 14), maximum observed serum concentration (1.5 μg/mL ± 0.4), time of maximal observed serum concentration (46 h ± 15.9) and terminal elimination half life (37.3 h; harmonic). Ceftiofur and desfuroylceftiofur‐related metabolites were only detectable in one milk sample at 36 h following treatment. There were no significant differences in the pharmacokinetic parameter between the nonlactating and lactating goats.  相似文献   

13.
The pulmonary surfactant‐associated protein (SFTPA1, SP‐A) gene has been studied as a candidate gene for lung disease resistance in humans and livestock. The objective of the present study was to identify polymorphisms of the porcine SFTPA1 gene coding region and its association with acute lung injury (ALI). Through DNA sequencing and the PCR‐single‐strand conformation polymorphism method, a novel 9‐bp nucleotide insertion (+) or deletion (‐) was detected on exon 2 of SFTPA1, which causes a change in three amino acids, namely, alanine (Ala), glycine (Gly) and proline (Pro). Individuals of three genotypes (?/?, +/? and +/+) were divided into equal groups from 60 Rongchang pigs that were genotyped. These pigs were selected for participation in the oleic acid (OA)‐ALI model by 1‐h and 3‐h injections of OA, and there were equal numbers of pigs in the control and injection groups. The lung water content, a marker for acute lung injury, was measured in this study; there is a significant correlation between high lung water content and the presence of the 9‐bp indel polymorphism (P < 0.01). The lung water content of the OA injection group was markedly higher than that of the control group and lung water content for the +/+ genotype was significantly higher than that of the others in the 1‐h group (P < 0.01). No differences in the expression of the SFTPA1 gene were found among individuals with different SFTPA1 genotypes, indicating that the trait is not caused by a linked polymorphism causing altered expression of the gene. The individuals with the ?/? genotype showed lower lung water content than the +/+ genotype pigs, which suggests that polymorphism could be a potential marker for lung disease‐resistant pig breeding and that pig can be a potential animal model for human lung disease resistance in future studies.  相似文献   

14.
为探讨深县猪群体内的遗传多样性及母系起源分化,采用PCR直接测序法测定了40头深县猪的mtDNA CytB基因长1 140 bp片段的全序列,并结合GenBank已公布的15个猪种mtDNA CytB基因全序列,采用邻接法构建深县猪、部分其他地方猪种和引进猪种的系统发育树。结果显示,在1 140 bp长的序列中A、T、G、C的含量分别为25.93%、31.72%、28.90%及13.45%,其中A+T的含量(57.65%)高于G+C的含量(42.35%);共发现2个变异位点,无插入和缺失突变,全部为转换位点,其中简约信息位点2个,未发现单一信息位点。40条序列共定义了3种单倍型,单倍型多样性(HD)为0.312,核苷酸多样性(Pi)为0.00026,平均核苷酸差异数(K)为0.327。在深县猪mtDNA CytB基因全序列NJ进化树中,三种单倍型聚为同一分支,母系来源单一,与莱芜猪、大蒲莲猪等山东品种遗传距离较近。结果表明,深县猪群体内遗传多样性比较贫乏,与山东地区的华北型黑猪种群有更近的亲缘关系。  相似文献   

15.
Eighteen microsatellites were used to investigate the genetic diversity and differentiation of eight Chinese indigenous goat breeds. The results indicated that there is a significant difference of genetic diversity between different loci. Chinese indigenous goat breeds have similar genetic diversity to other Asian goats, but with lower Fst. The clustering of individuals and populations showed that Chinese indigenous goat breeds might have originated from two ancestral populations. The genetic differentiation between populations is consistent with the results of archaeology, mtDNA and RAPD.  相似文献   

16.
The beta 3‐adrenergic receptor (ADRB3) is a G protein‐coupled receptor that is involved in regulating energy homeostasis. We have studied DNA sequences of porcine ADRB3 to find candidate genetic polymorphisms for economically important growth and performance traits in pigs. Five novel haplotypes derived from the three In/dels and 44 SNPs were identified among domestic pigs and wild boars. Three of them encode non‐synonymous amino acid sequences by five missense polymorphisms and a frameshift by a thymine insertion. The amino acid polymorphic sites were distributed as follows: one substitution was in extracellular loop 1, three substitutions were in intracellular loop3 and one substitution and the deletion of two amino acids were at the carboxyl‐terminal. There was no polymorphism in the transmembrane domains. In addition, we surveyed the allelic frequency of the thymine insertion that cause frameshift in South‐east Asian local pigs, including some commercial breeds and wild boars. This thymine insertion was distributed widely in the domestic pigs and wild boars. The frequencies of this allele were relatively low in Western improved breeds, while they were very common in Asian breeds and wild boars in Asia. This result indicates that this insertion originally occurred in ancient Asian wild boars and then circulated among Asian domestic pigs. This allele also spread over Western breeds, probably through the introgression of Asian pigs into European stocks during the 18th and 19th centuries.  相似文献   

17.
[目的]从分子水平上探究青海省唐古拉山牦牛群体的母系遗传多样性、群体遗传结构及其遗传背景。[方法] 对52头唐古拉山牦牛个体mtDNA D-loop区序列进行测定后,使用生物信息学软件分析确定其核苷酸变异位点和单倍型数目,计算单倍型多样度和核苷酸多样度大小,并进行系统发育分析。[结果] 在619 bp唐古拉山牦牛D-loop区序列分析中,排除2处插入（缺失）后共检测到31处多态位点,包括单一多态位点5处和简约信息位点26处。根据序列间核苷酸变异共确定了13种单倍型,单倍型多样度和核苷酸多样度分别为0.821±0.043和0.007±0.004。与我国其他18个家牦牛品种和野牦牛相比,唐古拉山牦牛群体单倍型多样度和核苷酸多样度值均较低,表明该群体遗传变异较为贫乏,母系遗传多样性水平较低。以美洲野牛为外群,邻接法（即NJ法）构建的系统发育树结果显示：唐古拉山牦牛群体13种单倍型分布在A、B、C、D和E五种单倍型组中,且聚为2个大的母系分支（即I和II）,支系Ⅰ占比为77%,提示唐古拉山牦牛由2个母系支系组成,拥有2个母系起源且以支系Ⅰ为主。 [结论] 唐古拉山牦牛母系遗传多样性水平较低,由2个母系支系组成,以支系Ⅰ为主,推测其有2个母系起源。  相似文献   

18.
本研究利用Dnasp4.10软件对中国9个家驴品种162个个体的mtDNA D-loop区385bp进行遗传多样性分析,共检测到32种单倍型35个核苷酸多态位点,其单倍型多样度为0.8137～0.9722,核苷酸多样度为0.0182～0.0270,表明我国家驴的遗传多态性丰富;利用MEGA3.1软件采用邻接法与3个努比亚野驴、3个索马里野驴和6个亚洲野驴的序列构建NJ系统发育树,并进行系统进化分析。结果表明:我国家驴的母系起源是非洲野驴中的努比亚野驴和索马里野驴,亚洲野驴不是中国家驴的母系祖先。  相似文献   

19.
采用PCR测序技术对采自甘肃境内的4种鼢鼠22个个体的线粒体DAND-loop区全序列进行了测定。结果表明：鼢鼠线粒体DNAD-loop序列长度为893、894、895、896或899bp,核苷酸位点突变类型有5种,即转换、颠换、插入、缺失及转换与颠换共存。碱基转换以T〈=〉C形式为主。其中T、C、A、G4种核苷酸的平均比例分别为34．1％、24．3％、30．1％、11．5％,A＋T含量（64．2％）明显高于G＋C含量（35．8％）。这4种鼢鼠22条线粒体DNAD-loop区发现20种单倍型,单倍型比例为81．82％,说明中国鼢鼠mtDNA遗传多态性很丰富。从系统发育树分析,4种鼢鼠明显聚为两类,推测鼢鼠可能有两个起源。  相似文献   

20.
Reproduction is a complex trait, controlled by genetic and environmental factors. Genetic improvement of this trait is important for animal breeders to improve the animal's production efficiency. Apart from genetic factors, animal production can be affected by environmental factors, i.e. the nursing ability of the sow, which is in turn affected directly by effective teat number (teats producing milk normally, TN) and number of piglets born alive (NBA). The objective of this study was to find new mutations, such as single nucleotide polymorphisms (SNPs) from the Zona Pellucida glycoprotein gene (ZP3) using Single Strand Chain Polymorphism (SSCP) and nucleotide sequencing and to investigate association between genetic variations and sow reproductive traits. We identified 13 new SNPs from exon 1, two new SNPs from intron 2, one SNP from intron 6 and a 18 bp (GCACGTGGTCCTCCTGG)‐deletion/insertion from intron 2 of the ZP3 gene. Five out of these mutations were selected to genotype in five different breeds (Small Meishan, Qingping, Duroc, Landrace and Large White) and association with reproductive traits in European breeds (Duroc, Landrace and Large White). The sows with genotype AA had more 1.11 piglets NBA than of the sows with genotype AB (p < 0.05) in the 18 bp deletion/insertion of intron 2, while non‐significant associations between the other mutations and reproductive traits (NBA and TN) were found.  相似文献   

设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号