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1.
本研究旨在了解猪源新型甲型H1N1流感病毒山东分离株的遗传进化特点。对山东地区出现的疑似H1N1流感病死猪进行病料采样,然后进行病毒的分离鉴定,并对分离病毒株(A/swine/Shandong/07/2011)的HA、NA、PB2、PB1、PA、NP、NS和M基因进行遗传进化分析。结果显示,该株病毒8个片段的核酸序列与A/H1N1(2009)对应序列的相似性都大于99%,并且该毒株HA蛋白的裂解位点和优先识别唾液酸α-2,6受体的位点与A/H1N1(2009)也高度一致,分别为PSIQSR↓GLFGAI和190D、225D。但是,与A/H1N1(2009)毒株的HA蛋白相比,受体结合位点处出现了重要的突变(Q226R)。该研究结果为进一步研究猪源新型甲型H1N1流感病毒的分子进化提供了重要信息。 相似文献
2.
目前流行的甲型H1N1流感病毒是一个复杂的基因重配病毒。对病毒的分子生物学研究,尤其是病毒囊膜蛋白血凝素（haemagglutini,HA）基因和神经氨酸酶（neuraminidase,NA）基因的研究,为控制和预防H1N1流感病毒具有重要的意义。本研究对中国流行的2009甲型H1N1猪源流感病毒的HA和NA基因与疫苗株A/California/07/2009（H1N1）,以及不同国家和地区的病毒株进行核苷酸和氨基酸序列分析。从NCBI的GenBank数据库下载所需要毒株的序列,采用Lasergene 6.0软件包中的EditSeq和MegAlign进行序列分析,进化树分析采用MEGA4.1软件。进化分析表明,中国流行的2009 H1N1流感病毒与疫苗株的核苷酸同源率分别在98.8%~99.7%和98.6%~99.6%之间;裂解位点处为I/VPSIQSR↓G,不具备高致病性流感病毒的特征;有1株NA抗性病毒。尽管与疫苗株相比,中国流行株2009甲型H1N1猪源流感病毒的HA和NA基因有部分突变,但这些突变并不是重要的。本研究首次详细分析了中国流行的2009甲型H1N1猪源流感病毒株与疫苗株的HA和NA基因的分子特征,对实时监测流感病毒HA和NA基因的变化具有重要意义。 相似文献
3.
一株欧亚类禽H1N1猪流感病毒分子特征分析 总被引：1，自引：0，他引：1
为调查国内猪流感病毒流行和遗传演化状况,将2013年从山东某屠宰场的采集样品接种SPF鸡胚,分离到1株病毒,通过RT-PCR鉴定和全基因测序,并运用生物软件对病毒基因组关键氨基酸位点和遗传演化关系进行分析。结果显示,分离株A/Swine/Shandong/5513/2013(H1N1)为欧亚类禽H1N1猪流感病毒,基因片段未发生重排,与中国大陆近几年分离株类似。HA蛋白受体结合位点具有结合哺乳动物气管上皮细胞特性;HA蛋白抗原位点与欧亚类禽H1N1猪流感代表株A/swine/Hong Kong/1780/2008(H1N1)仅有一处不同,Q196H;裂解位点氨基酸为PSIQSR/GL,PB2蛋白毒力关键氨基酸位点为T271和E627,分离株为典型低致病力毒株。本毒株的分离鉴定为分析中国大陆猪流感流行状况和分子特征提供了数据。 相似文献
4.
猪流感病毒H1N1广东分离株HA基因的克隆与进化分析 总被引：1，自引：1，他引：0
采用常规的血清学试验和特异性RT-PCR,从广东不同地区猪场分离鉴定出8株H1N1亚型猪流感病毒(SIV)。用流感病毒血凝素(HA)基因通用引物扩增了8株病毒的血凝素(HA)基因,经克隆测序,HA基因全长1 757 bp,编码566个氨基酸。8个毒株的HA基因推导氨基酸序列分析表明,均含有8个潜在的N糖基化位点,且糖基化位点相同,其HA1、HA2之间切割位点序列为IPSIQSR↓G,从分子水平推论,此8株H1N1 SIV均属于非高致病性毒株。同源性分析表明,此8株病毒的氨基酸序列与经典SIV之间的同源性在92.3%~94.7%之间;与2009年甲型H1N1流感病毒同源性在80.4%~92.4%之间;与欧洲类禽SIV分离株同源性在80.4%~84.1%之间。进化关系表明,该8株SIV与A-swine-Shanghai-3-2005-H1N1同处一分支,与2009年甲型H1N1流感病毒和经典SIV分离株亲缘关系较近,与欧洲类禽SIV分离株亲缘关系较远。 相似文献
5.
《中国兽医学报》2017,(1)
对宁夏地区2011年分离到的5株H1N1亚型猪流感病毒进行了基因组测定和遗传进化分析。结果显示:宁夏地区H1N1亚型猪流感病毒具有多样性,5株分离株可分为3类,其中1株为类人H1N1猪流感病毒,2株为经典猪流感病毒,另外2株为重组猪流感病毒,其PB2、PB1、PA、NP、NS基因来源于北美三元重组猪流感病毒,HA、NA、M基因来源于经典猪流感病毒;HA蛋白裂解位点附近氨基酸分析显示5株H1N1亚型猪流感分离株均为低致病性毒株;序列分析结果显示5株病毒在HA蛋白受体结合位点、抗原位点,以及NA蛋白潜在糖基化位点处氨基酸存在差异,这些差异具有分支特异性。5株病毒在NA和M2蛋白上均未出现与神经氨酸酶抑制剂和金刚烷胺耐药性相关的氨基酸变异,但其中3株病毒的PB2蛋白基因具有哺乳动物适应性变异E627K。 相似文献
6.
流感病毒血凝素(HA)被宿主蛋白酶切割活化是流感病毒复制和扩散的关键步骤.2009甲型H1N1流感病毒HA的裂解位点为单碱性氨基酸,只能被宿主特定组织部位表达的某些蛋白酶所切割活化.本研究构建了主要存在于人呼吸道和肺脏的跨膜丝氨酸蛋白酶4 (TMPRSS4)的真核表达重组质粒pCA-TMPRSS4-Flag与表达2009甲型H1N1流感病毒中国四川分离株HA的真核重组表达质粒pCA-SCHA共转染293T细胞,利用westernblot证明2009甲型H1N1流感病毒的HA蛋白能够被TMPRSS4切割;通过激光共聚焦确定TMPRSS4和HA在293T细胞膜上共定位;并进一步通过细胞融合试验证明经正确切割的HA具有在低pH条件下介导细胞膜发生融合的生物学功能.本实验为研究自然感染情况下参与活化流感病毒的宿主胰蛋白酶提供了实验依据. 相似文献
7.
《中国预防兽医学报》2020,(8)
为鉴定上海地区猪流感病毒的流行株及其分子生物学特征,本研究从上海地区养殖场采集疑似流感症状的猪咽拭子样品40份,采用套式PCR结合鸡胚分离鉴定方法,从中分离到1株H1N1亚型猪流感病毒(SIV),命名为A/swine/Shanghai/01/2019(H1N1)。经全基因组测定和遗传进化分析结果显示该分离株的8个基因节段与欧亚类禽H1N1 SIV同源性最高,其PB2、PB1、PA基因节段可能来源于A/swine/Jiangsu/49/2012(H1N1)病毒,NA、NP和M基因节段可能来源于A/swine/Shanghai/3/2014(H1N1)病毒。该分离病毒的HA蛋白裂解位点为PSIQSR↓GLFGAI,为低致病性流感病毒的分子特征。该分离株NA蛋白未出现与神经氨酸酶抑制剂相关的氨基酸突变,M2蛋白S~(31)N突变表明该病毒可能对金刚烷胺类药物具有一定的耐药性。PA蛋白~(224)S和PB2蛋白~(701)N突变提示该分离株对哺乳动物的适应性增强,可能导致其致病性增强,需要加强对此类SIV的监测。结合近年来的监测表明,上海地区猪群中H1N1亚型SIV持续存在,需要持续跟踪监测SIV变异趋势。本研究为防控猪流感提供实验依据。 相似文献
8.
【目的】了解广东地区猪流感病毒(Swine influenza virus, SIV)的流行情况并探究其分子生物学特征。【方法】采集广东某猪场疑似猪流感病毒感染猪的鼻拭子和肺脏组织样品进行病毒分离鉴定、遗传进化和关键氨基酸位点分析。【结果】样品经实时荧光定量RT-PCR检测为猪流感病毒核酸阳性;在红细胞凝集试验中,该病毒对鸡红细胞有凝集作用,血凝效价为1∶128;8个基因片段序列结果经BLAST比对和进化树分析显示,HA、NA基因属于欧亚类禽猪流感病毒(H1N1)分支,PA、PB1、PB2、NP和M基因属pdm/09分支,NS基因属于北美三源重组分支,因此,本试验分离株属于G4基因型欧亚类禽猪流感病毒,将其命名为A/swine/Guangdong/CJM2/2022(H1N1)。关键氨基酸位点分析显示,分离株HA蛋白裂解位点序列为PSIQSR/GL,具有典型低致病性流感病毒的分子特征。HA基因在受体结合位点处的190、225、226位氨基酸分别为D、E、Q,表明其既具有结合人型唾液酸受体的潜能又具有结合禽型唾液酸受体的潜能。NA基因关键氨基酸残基均未发生突变,提示分离株对奥司他韦和扎那... 相似文献
9.
H1N2亚型猪流感病毒HA、NP、NA、M和NS基因的克隆与序列分析 总被引：2，自引：0，他引：2
对3株H1N2亚型猪流感病毒(SIV):Sw/GX/17/05、Sw/HN/1/05和Sw/GX/13/06的血凝素(HA)、核蛋白(NP)、神经氨酸酶(NA)、基质蛋白(M)和非结构蛋白(NS)基因进行克隆和序列分析.结果显示:3株分离毒株HA、NP、NA、M和NS基因之间核苷酸同源性分别为91.3%～98.0%、98.4%～98.8%、97.4%～98.3%、98.8%～99.8%和98.1%～98.4%.遗传进化分析显示:分离毒株与美国分离的三源基因重排H1N2 SIV具有较近的亲缘关系;在HA、NP、M和NS基因进化树中,3株分离毒株均位于古典H1N1亚型SIV群,在NA基因进化树中,3株分离毒株则位于人流感病毒群.HA和NA基因推导氮基酸序列分别与代表毒株古典H1N1 SIV A/swine/Maryland/23239/1991(H1N1)和人H3N2流感病毒A/Buenos Aires/4459/96(H3N2)比较分析显示:HA(95.4%～96.1%)和NA(96.6%～97.2%)具有较高的氨基酸同源性;糖基化位点、抗原位点和受体结合位点(HA)处氨基酸存在一定的差异,这些氨基酸差异对病毒生物学特性的影响有待于进一步研究. 相似文献
10.
本研究2012年底从辽宁省某屠宰场猪鼻咽拭子样品中分离到1株流感病毒,经HA—HI试验和RT—PCR鉴定为H1N1亚型猪流感病毒株,命名为A／swine/Liaoning／01／2012（H1N1）,通过对病毒的8个基因片段克隆并测序,并利用分子生物学软件进行遗传演化分析。结果表明,分离株HA基因裂解位点附近的氨基酸序列为IPSIQSRjG,符合低致病力流感病毒的分子特征。全基因组进化树结果表明,分离株的8个基因片段与A／swine／Jiangsu／40／2011（H1N1）株核苷酸同源性最高,分离株处在类禽型H1N1亚型遗传进化分支上;由于类禽型H1N1猪流感病毒具有潜在感染人的潜力,在国外和国内均有感染人的报道,因此,辽宁省首次分离到该型猪流感病毒对全省养猪业和公共卫生安全具有重要意义,值得深入研究。 相似文献
11.
本研究从广东省某猪场采集37份疑似猪流感症状的猪鼻拭子样品,接种于9日龄SPF鸡胚并收集尿囊液,通过血凝试验、血凝抑制试验和RT-PCR鉴定,分离得到一株猪流感病毒,经RT-PCR分别扩增8个基因片段,进行基因测序及序列分析,与GenBank收录的参考毒株比对并构建进化树。结果显示,分离毒株为H1N1亚型猪流感病毒,将其命名为A/swine/Guangdong/2/2018（H1N1）。遗传进化分析显示,分离株8个片段的核酸序列与A/swine/Guangdong/L3/2009（H1N1）对应序列的同源性均达99%以上,与经典型H1N1亚型猪流感病毒处于同一分支。分离毒株HA的裂解位点为PSIQSR↓GL,符合低致病性流感病毒分子特征。HA基因受体位点为190D、225G和226Q,表明本毒株既可以结合SAα-2,6-Gal型人类流感病毒SA受体,也有结合SAα-2,3-Gal型禽类流感病毒SA受体的可能,在28、40、104、304、498、557位氨基酸处有6个潜在糖基化位点;NA蛋白在50、58、63、68、98、146、235位氨基酸处有6个潜在糖基化位点,NA蛋白氨基酸序列活性中心位点为119E、199D、223I、275H、293R、295N,氨基酸分析位点未出现突变,表明本分离株对神经氨酸酶抑制剂类药物的敏感性较高,但在M2蛋白中,31位氨基酸由敏感型的（S）突变为抗药的（N）,提示可能对金刚烷胺类药物产生耐药性。开展猪流感病毒分离鉴定与遗传进化分析将为广东地区的猪流感流行和变异情况提供重要信息。 相似文献
12.
Kapczynski DR Gonder E Tilley B Hernandez A Hodgson J Wojcinski H Jiang H Suarez DL 《Avian diseases》2011,55(4):633-641
Beginning in April 2009, a novel H1N1 influenza virus caused acute respiratory disease in humans, first in Mexico and then around the world. The resulting pandemic influenza A H1N1 2009 (pH1N1) virus was isolated in swine in Canada in June 2009 and later in breeder turkeys in Chile, Canada, and the United States. The pH1N1 virus consists of gene segments of avian, human, and swine influenza origin and has the potential for infection in poultry following exposure to infected humans or swine. We examined the clinical events following the initial outbreak of pH1N1 in turkeys and determined the relatedness of the hemagglutinin (HA) gene segments from the pH1N1 to two H1N1 avian influenza (AI) isolates used in commercial turkey inactivated vaccines. Overall, infection of turkey breeder hens with pH1N1 resulted in -50% reduction of egg production over 3-4 weeks. Genetic analysis indicated one H1N1 AI vaccine isolate (Alturkey/North Carolina/17026/1988) contained approximately 92% nucleotide sequence similarity to the pH1N1 virus (A/Mexico/4109/2009); whereas, a more recent AI vaccine isolate (A/ swine/North Carolina/00573/2005) contained 75.9% similarity. Comparison of amino acids found at antigenic sites of the HA protein indicated conserved epitopes at the Sa site; however, major differences were found at the Ca2 site between pH1N1 and A/ turkey/North Carolina/127026/1988. Hemagglutinin-inhibition (HI) tests were conducted with sera produced in vaccinated turkeys in North Carolina to determine if protection would be conferred using U.S. AI vaccine isolates. HI results indicate positive reactivity (HI titer > or = 5 log2) against the vaccine viruses over the course of study. However, limited cross-reactivity to the 2009 pH1N1 virus was observed, with positive titers in a limited number of birds (6 out of 20) beginning only after a third vaccination. Taken together, these results demonstrate that turkeys treated with these vaccines would likely not be protected against pH1N1 and current vaccines used in breeder turkeys in the United States against circulating H1N1 viruses should be updated to ensure adequate protection against field exposure. 相似文献
13.
Zhao G Fan Q Zhong L Li Y Liu W Liu X Gao S Peng D Liu X 《Research in veterinary science》2012,93(1):125-132
To investigate whether the 2009 pandemic H1N1 influenza A virus was still being transmitted in swine, a total of 1029 nasal swab samples from healthy swine were collected from January to May 2010 in Jiangsu province of China. Eight H1N1 influenza viruses were isolated and identified, and their full length genomes were sequenced. We found that all eight of the H1N1 viruses shared higher than 98.0% sequence identity with the 2009 pandemic virus A/Jiangsu/1/2009 (JS1). In addition, some of these viruses had D225G (3/8) mutations in the receptor binding sites of the hemagglutinin (HA) protein, indicating enhancement of their binding affinity to the sialic α2, 3Gal receptor. In conclusion, the 2009 pandemic H1N1 influenza A virus has retro-infected swine from humans in mainland China, and significant viral evolution is still ongoing in this species. 相似文献
14.
C. S. Kyriakis V. G. Papatsiros L. V. Athanasiou G. Valiakos I. H. Brown G. Simon K. Van Reeth S. Tsiodras V. Spyrou C. Billinis 《Zoonoses and public health》2016,63(5):370-373
The introduction of the 2009 pandemic H1N1 (pH1N1) influenza virus in pigs changed the epidemiology of influenza A viruses (IAVs) in swine in Europe and the rest of the world. Previously, three IAV subtypes were found in the European pig population: an avian‐like H1N1 and two reassortant H1N2 and H3N2 viruses with human‐origin haemagglutinin (HA) and neuraminidase proteins and internal genes of avian decent. These viruses pose antigenically distinct HAs, which allow the retrospective diagnosis of infection in serological investigations. However, cross‐reactions between the HA of pH1N1 and the HAs of the other circulating H1 IAVs complicate serological diagnosis. The prevalence of IAVs in Greek swine has been poorly investigated. In this study, we examined and compared haemagglutination inhibition (HI) antibody titres against previously established IAVs and pH1N1 in 908 swine sera from 88 herds, collected before and after the 2009 pandemic. While we confirmed the historic presence of the three IAVs established in European swine, we also found that 4% of the pig sera examined after 2009 had HI antibodies only against the pH1N1 virus. Our results indicate that pH1N1 is circulating in Greek pigs and stress out the importance of a vigorous virological surveillance programme. 相似文献
15.
Ana Moreno Elena Gabanelli Enrica Sozzi Davide Lelli Chiara Chiapponi Massimo Ciccozzi Gianguglielmo Zehender Paolo Cordioli 《Veterinary research》2013,44(1):112
European H1N2 swine influenza viruses (EU H1N2SIVs) arose from multiple reassortment events among human H1N1, human H3N2, and avian influenza viruses. We investigated the evolutionary dynamics of 53 Italian H1N2 strains by comparing them with EU H1N2 SIVs. Hemagglutinin (HA) phylogeny revealed Italian strains fell into four groups: Group A and B (41 strains) had a human H1 similar to EU H1N2SIVs, which probably originated in 1986. However Group B (38 strains) formed a subgroup that had a two-amino acid deletion at positions 146/147 in HA. Group C (11 strains) contained an avian H1 that probably originated in 1996, and Group D (1 strain) had an H1 characteristic of the 2009 pandemic strain. Neuraminidase (NA) phylogeny suggested a series of genomic reassortments had occurred. Group A had an N2 that originated from human H3N2 in the late 1970s. Group B had different human N2 that most likely arose from a reassortment with the more recent human H3N2 virus, which probably occurred in 2000. Group C had an avian-like H1 combined with an N2 gene from one of EU H1N2SIVs, EU H3N2SIVs or Human H3N2. Group D was part of the EU H3N2SIVs clade. Although selection pressure for HA and NA was low, several positively selected sites were identified in both proteins, some of which were antigenic, suggesting selection influenced the evolution of SIV. The data highlight different evolutionary trends between European viruses and currently circulating Italian B strains and show the establishment of reassortant strains involving human viruses in Italian pigs. 相似文献
16.
Swine influenza viruses H1N1 and H3N2 have been reported in the swine population worldwide. From June 2008 to June 2009, we carried out serological and virological surveillance of swine influenza in the Hubei province in central China. The serological results indicated that antibodies to H1N1 swine influenza virus in the swine population were high with a 42.5% (204/480) positive rate, whereas antibodies to H3N2 swine influenza virus were low with a 7.9% (38/480) positive rate. Virological surveillance showed that only one sample from weanling pigs was positive by RT-PCR. Phylogenetic analysis of the hemagglutinin and neuraminidase genes revealed that the A/Sw/HB/S1/2009 isolate was closely related to avian-like H1N1 viruses and seemed to be derived from the European swine H1N1 viruses. In conclusion, H1N1 influenza viruses were more dominant in the pig population than H3N2 influenza viruses in central China, and infection with avian-like H1N1 viruses persistently emerged in the swine population in the area. 相似文献
17.
H1N1猪流感广东株血凝素基因的克隆与序列分析 总被引：6，自引：1，他引：6
用RT-PCR方法扩增H1N1亚型猪流感病毒广东分离株A／Swine／GuangDong／711／2001HA基因，对其进行了克隆和测序。结果显示，HA基因全长1771bp．共编码579个氨基酸。A／Swine／Guang Dong／711／2001HA基因编码的氨基酸序列中有8个糖基化位点，5个位于HAl基因的第27、28、40、104和287位点，3个位于HA2基因的21、153和213位点。与H1N1亚型猪流感经典毒株比较后发现，血凝素糖基化位点并不是高度保守的。将A／Swine／Guang Dong／711／2001与自Gen Bank读取的1918年人流感毒株A／South Carolina／1／18、1991年人流感毒株A／MD／12／91和1997年猪流感毒株A／Swine／Wisconsin／238／97等进行核苷酸同源性比较分析，A／Swine／Guang Dong／711／2001与A／SouthCarolina／1／18、A／MD／12／91和A／Swine／Wisconsin／238／97等毒株的核苷酸同源性分别为93．9％、94．7％和93．9％。从系统发生树来看，A／Swine／Guang Dong／711／2001与A／South Carolina／1／18和A／Swine／Wisconsin／238／97的亲缘关系相近。 相似文献
18.
中国类禽型H1N1亚型猪流感病毒的发现和遗传分析 总被引：1，自引：0，他引：1
采用禽流感病毒通用引物,对2006年发现的1株H1N1亚型的类禽型猪流感病毒的全基因组进行了测序,并进行了遗传学分析。序列分析表明它的8个片段与欧洲的类禽型猪流感病毒A/swine/Ile et Vilaine/1455/99(H1N1)病毒和A/swine/Cotes d'Armor/1488/99(H1N1)病毒的相应基因具有高度的同源性,同源性可达97%~99%,表明类禽型猪流感病毒已在中国出现。其血凝素基因的190E→D和225G→E的突变使得其结合NeuAc-a2,6Gal受体的能力高于NeuAca2,3Gal受体。欧洲的类禽型猪流感病毒可以直接感染人,并且可导致人的肺炎和死亡。中国类禽型猪流感病毒的发现及其的NeuAca2,6Gal受体结合特性使其成为一个潜在可感染人的病毒。 相似文献
19.
Núria Busquets Joaquim Segalés Lorena Córdoba Tufaria Mussá Elisa Crisci Gerard E. Martín-Valls Meritxell Simon-Grifé Marta Pérez-Simó Monica Pérez-Maíllo Jose I. Nú?ez Francesc X. Abad Lorenzo Fraile Sonia Pina Natalia Majó Albert Bensaid Mariano Domingo María Montoya 《Veterinary research》2010,41(5)
The recent pandemic caused by human influenza virus A(H1N1) 2009 contains ancestral gene segments from North American and Eurasian swine lineages as well as from avian and human influenza lineages. The emergence of this A(H1N1) 2009 poses a potential global threat for human health and the fact that it can infect other species, like pigs, favours a possible encounter with other influenza viruses circulating in swine herds. In Europe, H1N1, H1N2 and H3N2 subtypes of swine influenza virus currently have a high prevalence in commercial farms. To better assess the risk posed by the A(H1N1) 2009 in the actual situation of swine farms, we sought to analyze whether a previous infection with a circulating European avian-like swine A/Swine/Spain/53207/2004 (H1N1) influenza virus (hereafter referred to as SwH1N1) generated or not cross-protective immunity against a subsequent infection with the new human pandemic A/Catalonia/63/2009 (H1N1) influenza virus (hereafter referred to as pH1N1) 21 days apart. Pigs infected only with pH1N1 had mild to moderate pathological findings, consisting on broncho-interstitial pneumonia. However, pigs inoculated with SwH1N1 virus and subsequently infected with pH1N1 had very mild lung lesions, apparently attributed to the remaining lesions caused by SwH1N1 infection. These later pigs also exhibited boosted levels of specific antibodies. Finally, animals firstly infected with SwH1N1 virus and latter infected with pH1N1 exhibited undetectable viral RNA load in nasal swabs and lungs after challenge with pH1N1, indicating a cross-protective effect between both strains. 相似文献