Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses     

Wardatou Boukari  Denis Filloux  Jean Heinrich Daugrois  Emmanuel Fernandez  Dimitre Mollov  Claudia Kaye  Martha Hincapie  Alexander Sanchez  Jianping Wang  Philippe Roumagnac  Philippe Rott 《Plant pathology》2020,69(6):1060-1069

Viruses in the genus Mastrevirus (family Geminiviridae), including those infecting sugarcane, have natural geographical ranges almost exclusively restricted to Africa and the Indian Ocean islands off the African coast. Only sugarcane white streak virus (SWSV) in Barbados and sugarcane striate virus (SStrV) in Florida and Guadeloupe are known to infect a few sugarcane varieties in the Western Hemisphere. In this study, PCR assays were developed to detect these two viruses in sugarcane. Five hundred and seventy-one DNA samples from Saccharum species and interspecific hybrids from the Miami World Collection of sugarcane and related grasses were tested for the presence of SStrV and SWSV by PCR. No variety was found infected by SWSV but SStrV was detected in 19 varieties. PCR data were confirmed by sequencing amplified fragments (248 bp). These fragments shared 93%–100% nucleotide identity with SStrV sequences from the GenBank database. SStrV isolates were distributed in six phylogenetic groups, including the four strains of the virus. Most varieties infected by SStrV originated from Asia, thus confirming a previous hypothesis stating that this virus originated from this continent. Absence of SStrV in commercial sugarcane in Florida also suggested that this virus has not been spread in this location, while infected plants have been present for several decades.  相似文献   

Whitened kernel surface: A fast and reliable method for assessing Fusarium severity on cereal grains by digital picture analysis     

Marine Ollier  Vincent Talle  Anne‐Laure Brisset  Zo Le Bihan  Simon Duerr  Marc Lemmens  Ellen Goudemand  Olivier Robert  Jean‐Louis Hilbert  Hermann Buerstmayr 《Plant Breeding》2019,138(1):69-81

Fusarium head blight (FHB) is a cereal disease of major importance responsible for yield losses and mycotoxin contaminations in grains. Here, we introduce a new measurement approach to quantify FHB severity on grains based on the evaluation of the whitened kernel surface (WKS) using digital image analysis. The applicability of WKS was assessed on two bread wheat and one triticale grain sample sets (265 samples). Pearson correlation coefficients between Fusarium‐damaged kernels (FDK) and WKS range from r = 0.77 to r = 0.81 and from r = 0.61 to r = 0.86 for the correlation between deoxynivalenol (DON) content and WKS. This new scoring method facilitates fast and reliable assessment of the resistance to kernel infection and shows significant correlation with mycotoxin content. WKS can be automated and does not suffer from the “human factor” inherent to visual scorings. As a low‐cost and fast approach, this method appears particularly attractive for breeding and genetic analysis of FHB resistance where typically large numbers of experimental lines need to be evaluated, and for which WKS is suggested as an alternative to visual FDK scorings.  相似文献   

Changes in fatty acid and sterol composition during oogenesis in the pearl oyster Pinctada margaritifera     

Isabelle Vahirua‐Lechat  Frédéric Laure  Jean René LeCoz  Jean Pierre Bianchini  Mereani Bellais  Gilles Le Moullac 《Aquaculture Research》2008,39(16):1739-1746

The fatty acid and sterol composition of the oyster Pinctada margaritifera during oogenesis and in eggs was analysed. No major differences were observed during oogenesis, but the egg composition was significantly different from that of gonads. The amount of saturated fatty acids was the highest in eggs and the C16:0 predominant (P<5%); by contrast, the amount of 22:6(n‐3) was significantly lower (P<5%) than in gonads. No major differences were observed for the polar lipid (PL) composition during oogenesis. The main free sterols in gonads and eggs were cholesterol and brassicasterol. Among free sterols, the proportion of cholesterol diminished continuously from the beginning to the end of gonad maturation, and this decrease persisted in eggs after spawning. Cholesterol represented 40% to 55% of the sterol ester encountered in gonad and eggs. This study allowed us to investigate the fatty acid and sterol composition during oogenesis of the pearl oyster P. margaritifera, leading to a clearer understanding of the nutritional requirements of pearl oyster during the reproduction process.  相似文献   

小麦EST—SSRs分子标记的特性及其遗传作图     

张立异  Leroy  Philip  Bernard  Michel  张庆勤  Sourdille  Pierre 《麦类作物》2008,28(1):11-20

为了解普通小麦EST来源的微卫星的多样性,从大约1000个包含微卫星的ESTs中设计了300对引物,研究和评估了它们的多态性水平,并且将多态性标记加入到现有的遗传图谱中。在五种不同类型的重复单元中,三个碱基的重复单元出现最多,占到77％。几乎所有的EST—SSRs标记（99．3％）的重复单元都含有G-C碱基对。37．4％的微卫星都是四次重复。对于扩增和多态性,300对引物中有60对没有扩增,21．3％的扩增引物没能产生预期的扩增片断。58％的标记至少在所用8个材料的一个中显示出多态性。W7984和Opata组合表现出最高的多态性水平。大多数普通小麦EST—SSRs标记的重复次数小于10,并且4次重复是最为普遍的。81个新的EST—SSR位点被添加到两个已有的参照遗传图谱中（62个加到ITMI,19个加到CTCS）。研究结果表明小麦EST-SSRs标记展示了一些不同于基因组微卫星的特异特征,在标记发展和其他遗传应用中,这就使得它们能够成为一种非常有价值的资源。  相似文献   

Non‐spherical pearl layers in the Polynesian ‘black‐lipped’ Pinctada margaritifera: The non‐nacreous deposits compared to microstructure of the shell growing edge     

Jean‐Pierre Cuif  Yannicke Dauphin  Gilles Luquet  Oulfa Belhadj  Stphan Rouzire  Murielle Salom  Marine Cotte  Andrea Somogyi  Kadda Medjoubi  Cedrik Lo  Denis Saulnier 《Aquaculture Research》2020,51(2):506-522

Cultivated pearls frequently exhibit morphological irregularities making obvious that mineral deposition was irregularly distributed onto nucleus surface. Taking advantage of experimental cultivations with short durations (from 10 days to few months), these irregular deposits predating occurrence of the nacre were investigated in Polynesian pearls by biochemical characterizations and a series of physical methods. Diversity in the resulting data suggests that various in‐depth alterations of the biomineralization mechanism may have occurred during the grafting process, leading to diversity in the biochemical pathways to nacreous deposition. This allows a precise discussion of current views about pearl formation. The “reversed shell theory” is formally disproved through point to point comparison with development of the shell growing edge. Similarity of pearl formation with “regeneration” or “shell repair” is also discussed, emphasizing the differences between these concepts.  相似文献   

Astaxanthin from Haematococcus pluvialis Prevents Oxidative Stress on Human Endothelial Cells without Toxicity     

Philippe Régnier  Jorge Bastias  Violeta Rodriguez-Ruiz  Noelia Caballero-Casero  Carmen Caballo  Dolores Sicilia  Axelle Fuentes  Murielle Maire  Michel Crepin  Didier Letourneur  Virginie Gueguen  Soledad Rubio  Graciela Pavon-Djavid 《Marine drugs》2015,13(5):2857-2874

Astaxanthin, a powerful antioxidant, is a good candidate for the prevention of intracellular oxidative stress. The aim of the study was to compare the antioxidant activity of astaxanthin present in two natural extracts from Haematococcus pluvialis, a microalgae strain, with that of synthetic astaxanthin. Natural extracts were obtained either by solvent or supercritical extraction methods. UV, HPLC-DAD and (HPLC-(atmospheric pressure chemical ionization (APCI)+)/ion trap-MS) characterizations of both natural extracts showed similar compositions of carotenoids, but different percentages in free astaxanthin and its ester derivatives. The Trolox equivalent antioxidant capacity (TEAC) assay showed that natural extracts containing esters displayed stronger antioxidant activities than free astaxanthin. Their antioxidant capacities to inhibit intracellular oxidative stress were then evaluated on HUVEC cells. The intracellular antioxidant activity in natural extracts was approximately 90-times higher than synthetic astaxanthin (5 µM). No modification, neither in the morphology nor in the viability, of vascular human cells was observed by in vitro biocompatibility study up to 10 µM astaxanthin concentrations. Therefore, these results revealed the therapeutic potential of the natural extracts in vascular human cell protection against oxidative stress without toxicity, which could be exploited in prevention and/or treatment of cardiovascular diseases.  相似文献   

Difference in factors explaining growth rate variability in European eel subpopulations: the possible role of habitat carrying capacity          下载免费PDF全文

Clarisse Boulenger  Alain J. Crivelli  Fabien Charrier  Jean‐Marc Roussel  Eric Feunteun  Anthony Acou 《Ecology of Freshwater Fish》2016,25(2):281-294

As a key parameter in the management of fish populations, individual growth rate (GR) variations were examined in the European eel (Anguilla anguilla; > 150 mm) using extensive mark–recapture surveys in the lotic habitats of two small rivers of western France: the Frémur, supposed to be saturated, and at the same latitude, the Oir with densities fivefold lower than those of the Frémur. In both systems, generalised linear models were used to test whether spatiotemporal factors such as dominant habitat type or local density affect GR variability. In the presumed unsaturated system, the Oir, GR variability is mainly explained by a set of habitat suitability drivers (density, dominant habitat type). In the Frémur, GRs appear independent of differences in habitat density or productivity. Below saturation, an increase in density will decrease the GR through intraspecific competition. At saturation, intraspecific competition reaches such high levels that regardless of eel density and productivity, the resources available by individual are similar throughout the system. In these circumstances, the effect of density on growth was presumed undetectable. Despite these contrasted results, mean GRs observed in both catchments were closed (~20 mm·year^?1). This is an unexpected result as GR is expected to be higher in unsaturated systems. This similarity could be explained by the difference between the two systems in terms of: (i) sex ratio (the Frémur is dominated by male, whereas the female is dominant in the Oir), (ii) habitat type distribution or (iii) possible interspecific competition (important salmonid populations in the Oir).  相似文献   

Main stem movement of Atlantic salmon parr in response to high river temperature          下载免费PDF全文

Stephen J. Dugdale  Jan Franssen  Emily Corey  Normand E. Bergeron  Michel Lapointe  Richard A. Cunjak 《Ecology of Freshwater Fish》2016,25(3):429-445

Atlantic salmon become thermally stressed when water temperatures exceed 23 °C. To alleviate this stress, they behaviourally thermoregulate by moving to patches of cold water, often forming large aggregations. These patches are known as thermal refuges. Given the consensus that climate change will increase temperatures in Atlantic salmon catchments, thermal refuges will become increasingly important in minimising summer mortalities. While the behaviour of salmonids within thermal refuges is fairly well understood, less is known about their main stem movement in search of thermal refuges or its thermal and temporal cues. We detail the results of a PIT telemetry study to investigate the main stem movement behaviour of thermally stressed Atlantic salmon parr in a temperature‐impacted river. PIT antennas placed around two thermal refuges and at the upstream and downstream limits of their surrounding reach were used to record the movement of salmonids during a heatwave. We observed parr movement at the upstream and downstream antennas 135 min prior to the occurrence of the midpoint of aggregations in the thermal refuges, indicating that Atlantic salmon parr make reach‐scale movements in search of cool water prior to aggregating. Logistic regression showed that the number of degree hours >28 °C predicted the occurrence of main stem movement with a good degree of accuracy, indicating that this temperature represents a fundamental threshold causing Atlantic salmon parr to move towards cool water. Such data could be instrumental in allowing river managers to place limits on human activity within rivers, allowing salmon populations time to recover following heat stress events.  相似文献   

Enzyme activities and diuron persistence in soil amended with vermicompost derived from spent grape marc and treated with urea     

Esperanza Romero  Jesús Fernández-Bayo  Jean Manuel Castillo Díaz  Rogelio Nogales 《Applied soil ecology》2010,44(3):198-204

Mineral fertilizers, organic amendments, and pesticides are inputs commonly used in conventional farming practices. The aim of this study was to evaluate the effects of single or combined applications of spent grape marc-vermicompost, urea, and/or diuron on soil-enzyme activities and the persistence of this herbicide in soils with low organic carbon content. The application of vermicompost enhanced dehydrogenase (DHase) enzyme activity over time but altered soil urease activity to a very limited extent. The reduction in diuron concentrations and the increase in DHase activity indicated that the soil microorganisms were capable of degrading the ureic herbicide. Treatment with vermicompost and diuron had a stimulatory effect on soil microbial activity. On the whole, the application of diuron and urea to the vermicompost-amended soil raised DHase and urease activity to maximum levels (>3 μg INTF g^?1 h^?1 and >47 μg NH₄⁺ g^?1 h^?1, respectively). The application of urea to the unamended and vermicompost-amended soil decreased diuron persistence from 18.8 and 33 d to 12.5 and 15 d, respectively. Our findings show that although vermicompost additions reduce diuron availability, this boosts diuron degradation when combined with urea. These additions, under different soil management conditions, minimize the bioavailability and persistence of diuron and consequently the risk of leaching and seepage into aquifers. Compared with untreated soils, these types of treated soils could also improve agricultural sustainability and the quality of the environment.  相似文献   

Mechanism of hydantoin ring opening in iprodione in aqueous media     

Omar Belafdal  Michel Bergon  Jean P. Calmon 《Pest management science》1986,17(4):335-342

The hydrolysis kinetics of iprodione in alkaline solutions of pH 8.3 to 12 at 25°C have been determined by ultraviolet spectrophotometry. Under these conditions, iprodione leads quantitatively and irreversibly to N-(3,5-dichloroanilinocarbonyl)-N-(isopropylaminocarbonyl)glycine. The reaction is not subject to a general basic catalysis and the rate law takes the form K_obs = K_OH- [OH^?1]. The activation entropy of -77 J mol^?1deg^?1, the value of the kinetic solvent isotope effect k_OH?/k_OD? of 0.79 and the value of 0.60 for the Hammett parameter σ, obtained for the hydrolysis of a series of 3-aryl-N-isopropyl-2,4-dioxoimidazolidine-1-carboxamides are all in agreement with the rate-determining attack by the hydroxyl ion on the carbonyl in the 4-position of the hydantoin ring of the fungicide.  相似文献