Improving Crop Model Inference Through Bayesian Melding With Spatially Varying Parameters     

Andrew O. Finley  Sudipto Banerjee  Bruno Basso 《Journal of Agricultural, Biological & Environmental Statistics》2011,16(4):453-474

An objective for applying a Crop Simulation Model (CSM) in precision agriculture is to explain the spatial variability of crop performance and to help guide decisions related to the site-specific management of crop inputs. CSMs require inputs related to soil, climate, management, and crop genetic information to simulate crop yield. In practice, however, measuring these inputs at the desired high spatial resolution is prohibitively expensive. We propose a Bayesian modeling framework that melds a CSM with sparse data from a yield monitoring system to deliver location specific posterior predicted distributions of yield and associated unobserved spatially varying CSM parameter inputs. These products facilitate exploration of process-based explanations for yield variability. The proposed Bayesian melding model consists of a systemic component representing output from the physical model and a residual spatial process that compensates for the bias in the physical model. The spatially varying inputs to the systemic component arise from a multivariate Gaussian process, while the residual component is modeled using a univariate Gaussian process. Due to the large number of observed locations in the motivating dataset, we seek dimension reduction using low-rank predictive processes to ease the computational burden. The proposed model is illustrated using the Crop Environment Resources Synthesis (CERES)-Wheat CSM and wheat yield data collected in Foggia, Italy.  相似文献   

Gastric stromal tumors in two rhesus macaques (Macaca mulatta)   总被引：2，自引：0，他引：2  

M Banerjee  L J Lowenstine  R J Munn 《Veterinary pathology》1991,28(1):30-36

Two female rhesus monkeys (Macaca mulatta, 10 and 24 years old) developed microcytic anemia and became terminally ill. At necropsy, large gastric masses were present, and, in one case, there were widespread abdominal metastases. Except for slightly atypical patterns, at the light microscopic level, the lesions resembled smooth muscle tumors. Ultrastructurally, however, cells in both tumors resembled primitive mesenchyme, while in one of the tumors, there were some characteristics of Schwann cells. No ultrastructural features of smooth muscle were present in either tumor. Vimentin and S-100 were detected immunohistochemically in both tumors. S-100 staining was more intense in the tumor with ultrastructural features of Schwann cells. Actin and desmin were not expressed in either gastric tumor, but diffusely stained a uterine tumor that was concomitantly present in one of the rhesus monkeys. The uterine tumor also exhibited typical ultrastructural features of smooth muscle. In the past, gastrointestinal stromal tumors in all species were thought to be of smooth muscle origin. Recently in human pathology, this conventional viewpoint has given way to the realization that there is a spectrum of neural crest and mesenchymal tumors. We report two gastric stromal tumors in two rhesus monkeys that histologically resembled smooth muscle tumors but were of neuroectodermal and primitive mesenchymal origin.  相似文献   

Efficiency of mannose-binding plant lectins in controlling a homopteran insect,the red cotton bug     

Roy A  Banerjee S  Majumder P  Das S 《Journal of agricultural and food chemistry》2002,50(23):6775-6779

Yield losses of different crops due to the attack of various classes of insects are a worldwide problem. Sucking type homopteran pests causing damage to many crop species are not controlled by commonly known insecticidal proteins, namely, Bacillus thuringiensis delta-endotoxin (Bt). This study describes the purification of mannose-binding lectins from three different monocotyledonous plants (Allium sativum, Colocasia esculenta, and Diffenbachia sequina) and their effects on a homopteran insect, the red cotton bug. All of them had a detrimental effect on the growth and development of the insect, where A. sativum bulb lectin showed the highest mortality of all, in particular. The same bulb lectin not only affected the growth and fecundity of the insect but also imparted drastic changes in the color, weight, and size, even on the second generation of the insects which have been reared on artificial diet supplemented with a sublethal dose of the lectin. Thus, this finding opens up a possibility of using this lectin as an important component in crop management.  相似文献   

Latent heat flux estimation in clear sky days over Indian agroecosystems using noontime satellite remote sensing data     

Kaniska Mallick  Bimal K. Bhattacharya  V.U.M. Rao  D. Raji Reddy  Saon Banerjee  H. Venkatesh  Vyas Pandey  Gouranga Kar  Joydeep Mukherjee  Sarweshwar P. Vyas  Alaka S. Gadgil  N.K. Patel 《Agricultural and Forest Meteorology》2009,149(10):1646-1665

A simplified evaporative fraction (Λ) based single-source energy balance scheme was tested with moderate resolution (1 km) noontime satellite observations to evaluate clear sky latent heat flux (λE) estimates over diverse agricultural landscapes. This approach uses two-dimensional (2D) scatter between land surface temperature (LST) and albedo to determine Λ. The operational utility of this scheme was demonstrated for estimating regional evapotranspiration and consumptive water use during rabi (November to April) crop growing season to predict pre-harvest wheat yield (error within 15.9% of reported mean) using time series data. The existence of triangular relations between Λ and LAI (leaf area index) or NDVI (normalized difference vegetation index) was found with basal line (hypotenuse) linearly coupled with LAI or NDVI at low level of surface soil wetness. The analysis of diurnal course of in situ Λ proved the validity of constant-Λ hypothesis over pure, uniform, homogeneous crop canopies but showed irregular and wave-like patterns over heterogeneous, mixed crop canopies. The root mean square error (RMSE) of noontime and daytime average λE estimates with respect to in situ λE measurements were also smaller over homogeneous agricultural canopies (41 and 23 W m⁻²) with correlation coefficients (r) 0.94 and 0.96, respectively, from 135 clear sky datasets as compared to RMSE over heterogeneous ones (59 and 28 W m⁻² with r = 0.66 and 0.82, respectively from 22 datasets). The intercomparison with another Λ based approach (LST–NDVI 2D scatter) showed the supremacy of Λ determined from LST–albedo 2D scatter. The efficiency of LST–NDVI scatter was better during the dry down or water limited phases of crop growth only. The uncertainties of λE estimates were attributed to errors in core radiation budget inputs, relative loss of conservativeness of Λ due to canopy heterogeneity, and the inherent limitations of the single-source approach. There is further scope to reduce present λE uncertainties by combining the new findings on Λ (LST–albedo scatter)–NDVI triangular relations, diurnal Λ and two-source radiation budget.  相似文献   

Degradation kinetics and safety evaluation of buprofezin residues in grape (Vitis vinifera L.) and three different soils of India     

Oulkar DP  Banerjee K  Patil SH  Upadhyay AK  Taware PB  Deshmukh MB  Adsule PG 《Pest management science》2009,65(2):183-188

BACKGROUND: This work was undertaken to determine the preharvest interval (PHI) of buprofezin to minimize its residues in grapes and thereby ensure consumer safety and avoid possible non‐compliance in terms of residue violations in export markets. Furthermore, the residue dynamics in three grapevine soils of India was explored to assess its environmental safety. RESULTS: Residues dissipated following non‐linear two‐compartment first + first‐order kinetics. In grapes, the PHI was 31 days at both treatments (312.5 and 625 g a.i. ha^?1), with the residues below the maximum permissible intake even 1 h after foliar spraying. Random sampling of 5 kg comprising small bunchlets (8–10 berries) collected from a 1 ha area gave satisfactory homogeneity and representation of the population. A survey on the samples harvested after the PHI from supervised vineyards that received treatment at the recommended dose showed residues below the maximum residue limit (MRL) of 0.02 mg kg^?1 applicable for the European Union. In soil, the degradation rate was fastest in clay soil, followed by sandy loam and silty clay, with a half‐life within 16 days in all the soils. CONCLUSION: The recommendation of the PHI proved to be effective in minimizing buprofezin residues in grapes. Thus, this work is of high practical significance to the domestic and export grape industry of India to ensure safety compliance in respect of buprofezin residues, keeping in view the requirements of international trade. Copyright © 2008 Society of Chemical Industry  相似文献   

Molecular characterization of Streptococcus agalactiae and Streptococcus uberis isolates from bovine milk     

Bibek Ranjan Shome  Mani Bhuvana  Susweta Das Mitra  Natesan Krithiga  Rajeswari Shome  Dhanikachalam Velu  Apala Banerjee  Sukhadeo B. Barbuddhe  Krishnamshetty Prabhudas  Habibar Rahman 《Tropical animal health and production》2012,44(8):1981-1992

Streptococci are one among the major mastitis pathogens which have a considerable impact on cow health, milk quality, and productivity. The aim of the present study was to investigate the occurrence and virulence characteristics of streptococci from bovine milk and to assess the molecular epidemiology and population structure of the Indian isolates using multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE). Out of a total of 209 bovine composite milk samples screened from four herds (A–D), 30 Streptococcus spp. were isolated from 29 milk samples. Among the 30 isolates, species-specific PCR and partial 16S rRNA gene sequence analysis identified 17 Streptococcus agalactiae arising from herd A and 13 Streptococcus uberis comprising of 5, 7, and 1 isolates from herds B, C, and D respectively. PCR based screening for virulence genes revealed the presence of the cfb and the pavA genes in 17 and 1 S. agalactiae isolates, respectively. Similarly, in S. uberis isolates, cfu gene was present in six isolates from herd C, the pau A/skc gene in all the isolates from herds B, C, and D, whereas the sua gene was present in four isolates from herd B and the only isolate from herd D. On MLST analysis, all the S. agalactiae isolates were found to be of a novel sequence type (ST), ST-483, reported for the first time and is a single locus variant of the predicted subgroup founder ST-310, while the S. uberis isolates were found to be of three novel sequence types, namely ST-439, ST-474, and ST-475, all reported for the first time. ST-474 was a double locus variant of three different STs of global clonal complex ST-143 considered to be associated with clinical and subclinical mastitis, but ST-439 and ST-475 were singletons. Unique sequence types identified for both S. agalactiae and S. uberis were found to be herd specific. On PFGE analysis, identical or closely related restriction patterns for S. agalactiae ST-483 and S. uberis ST-439 in herds A and B respectively, but an unrelated restriction pattern for S. uberis ST-474 and ST-475 isolates from herds D and C respectively, were obtained. This signifies that the isolates of particular ST may exhibit related PFGE patterns suggesting detection of a faster molecular clock by PFGE than MLST. Since all the isolates of both the species belonged to novel sequence types, their epidemiological significance in global context could not be ascertained, however, evidence suggests that they have uniquely evolved in Indian conditions. Further research would be useful for understanding the role of these pathogens in bovine sub-clinical mastitis and implementing effective control strategies in India.  相似文献   

Correlations among <Emphasis Type="Italic">Anaplasma marginale</Emphasis> parasitemia and markers of oxidative stress in crossbred calves     

De UK  Dey S  Banerjee PS  Sahoo M 《Tropical animal health and production》2012,44(3):385-388

The present study was designed to determine the correlations among Anaplasma marginale parasitemia and markers of oxidative stress in crossbred calves. Blood was collected from 11 crossbred calves infected with A. marginale along with 11 healthy crossbred calves as controls for determination of hematology and oxidative stress indicators. Percentage of parasitemia in infected calves varied from 0.8% to 6.0%. The values of hematological indicators and antioxidant enzymes were decreased, whereas erythrocytic lipid peroxidation (LPO) and plasma nitrate (NO) level were significantly (p < 0.05) augmented in A. marginale-infected animals over healthy group. Parasitemia was positively correlated (p < 0.01) with erythrocytic LPO and plasma NO and negatively correlated (p < 0.01) with hematological indicators and antioxidant enzymes. In addition, erythrocytic LPO was negatively correlated (p < 0.01) with the hemoglobin, erythrocyte count, and packed cell volume. From the present study, it can be concluded that anaplasmosis in crossbred calves is associated with a parasitic load-dependent oxidative damage as indicated by poor antioxidant status and enhanced oxidative stress, which are contributed to severe anemia.  相似文献   

PiggyBac transposon mutagenesis: a tool for cancer gene discovery in mice   总被引：1，自引：0，他引：1  

Rad R  Rad L  Wang W  Cadinanos J  Vassiliou G  Rice S  Campos LS  Yusa K  Banerjee R  Li MA  de la Rosa J  Strong A  Lu D  Ellis P  Conte N  Yang FT  Liu P  Bradley A 《Science (New York, N.Y.)》2010,330(6007):1104-1107

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Projecting Future Crop Evapotranspiration and Irrigation Requirement of Potato in Lower Gangetic Plains of India using the CROPWAT 8.0 Model     

Saon Banerjee  S. Chatterjee  S. Sarkar  S. Jena 《Potato Research》2016,59(4):313-327

A study on evapotranspiration from potato fields was conducted in the Lower Gangetic Plains of India. The input data required for the CROPWAT irrigation management model was collected, and evapotranspiration (ET) and irrigation water requirement (IWR) for potato crops were calculated using the model. Firstly, the CROPWAT model was validated by comparing simulated crop evapotranspiration (SET) with actual ET calculated through the field water balance method. Thereafter, SET and IWR for nine locations in the lower Gangetic plains of India were calculated for the period from 1996–1997 to 2008–2009, for the current situation (using 20-year-average weather data of the stations), and for elevated thermal conditions, i.e. considering 2 and 3 °C increases over the current temperature. The future change in IWR for potato up to 2050 was also calculated considering the projected climatic scenario generated by the PRECIS model. The CROPWAT calculated IWR values showed an increasing, though not statistically significant, trend in requirement of irrigation water for potato across the nine locations during the period from 1996–1997 to 2008–2009. At a temperature increase of 2 °C over normal, the mean SET of potato would increase by 0.06 mm per day and the average IWR would be 6.0 mm per season more. If the mean temperature would be 3 °C more than normal, the SET would be 0.16 mm day^?1 higher and the IWR 16.6 mm. Also based on the projected climatic scenario generated by the PRECIS model, the future SET up to 2050 showed an increasing trend. The present study indicates increasing demand for irrigation water, which may significantly affect the agricultural scenario in the region.  相似文献   

Determination of critical limits of soil nutrients for use in optimizing fertilizer rates for fish ponds in red, lateritic soil zones   总被引：1，自引：0，他引：1  

Abira Banerjee  G.N. Chattopadhyay  C.E. Boyd   《Aquacultural Engineering》2009,40(3):144-148

Mesocosms containing lateritic soil from West Bengal, India and de-ionized water were treated with different amounts of nitrogen (N), phosphorus (P), and potassium (K) fertilizers. Concentrations of available N, P, and K in soils and gross primary productivity were measured for the mesocosms. Critical concentrations of the three nutrients were estimated by the graphical method of Cate and Nelson that has been used widely for establishing critical soil nutrient concentrations in fertilization research on terrestrial crop plants. Critical concentrations of the three nutrients were: available N, 200 mg kg⁻¹; available P, 13 mg kg⁻¹; available K, 80 mg kg⁻¹. Ponds sited in red, lateritic soil in West Bengal were treated monthly with 20, 15, and 3 kg ha⁻¹ application⁻¹ of N, P, and K, respectively. There was an increase in gross primary productivity when the critical concentrations of available N, P, and K established in the mesocosm study were attained in the pond soils. Fish production in fertilized ponds is positively correlated with gross primary productivity. Thus, the concept of critical nutrient concentrations in soils could be a valuable tool in pond fertilization research.  相似文献