Australian Cattle Dogs with Neuronal Ceroid Lipofuscinosis are Homozygous for a CLN5 Nonsense Mutation Previously Identified in Border Collies          下载免费PDF全文

A. Kolicheski  G.S. Johnson  D.P. O'Brien  T. Mhlanga‐Mutangadura  D. Gilliam  J. Guo  T.D. Anderson‐Sieg  R.D. Schnabel  J.F. Taylor  A. Lebowitz  B. Swanson  D. Hicks  Z.E. Niman  F.A. Wininger  M.C. Carpentier  M.L. Katz 《Journal of veterinary internal medicine / American College of Veterinary Internal Medicine》2016,30(4):1149-1158

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Accuracy of genomic prediction using imputed whole‐genome sequence data in white layers          下载免费PDF全文

M. Heidaritabar  M.P.L. Calus  H‐J. Megens  A. Vereijken  M.A.M. Groenen  J.W.M. Bastiaansen 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2016,133(3):167-179

There is an increasing interest in using whole‐genome sequence data in genomic selection breeding programmes. Prediction of breeding values is expected to be more accurate when whole‐genome sequence is used, because the causal mutations are assumed to be in the data. We performed genomic prediction for the number of eggs in white layers using imputed whole‐genome resequence data including ~4.6 million SNPs. The prediction accuracies based on sequence data were compared with the accuracies from the 60 K SNP panel. Predictions were based on genomic best linear unbiased prediction (GBLUP) as well as a Bayesian variable selection model (BayesC). Moreover, the prediction accuracy from using different types of variants (synonymous, non‐synonymous and non‐coding SNPs) was evaluated. Genomic prediction using the 60 K SNP panel resulted in a prediction accuracy of 0.74 when GBLUP was applied. With sequence data, there was a small increase (~1%) in prediction accuracy over the 60 K genotypes. With both 60 K SNP panel and sequence data, GBLUP slightly outperformed BayesC in predicting the breeding values. Selection of SNPs more likely to affect the phenotype (i.e. non‐synonymous SNPs) did not improve the accuracy of genomic prediction. The fact that sequence data were based on imputation from a small number of sequenced animals may have limited the potential to improve the prediction accuracy. A small reference population (n = 1004) and possible exclusion of many causal SNPs during quality control can be other possible reasons for limited benefit of sequence data. We expect, however, that the limited improvement is because the 60 K SNP panel was already sufficiently dense to accurately determine the relationships between animals in our data.  相似文献   

鼠源细胞TaqMan实时荧光定量PCR检测方法的建立     

苏佳  赵炜  秦义娴  邓永  高月异  白洪旭  薛青红  陈晓春  吴华伟 《中国兽药杂志》2023,57(3):10-16

为对鼠源细胞进行鉴别检测,以鼠线粒体16S rRNA基因序列为靶位点设计特异性引物及探针,建立实时荧光定量PCR检测方法,并评价该方法的特异性及敏感性。结果显示,所建立的检测方法特异性好,针对鼠源细胞基因组荧光定量PCR扩增曲线良好,其他物种来源细胞基因组及生物制品原辅材料未出现特异性扩增曲线;敏感性高,基因拷贝数检出限度为45.3拷贝。本试验建立的荧光定量PCR检测方法能够有效地对鼠源细胞进行快速检测,为细胞质量控制提供了有效方法。  相似文献   

鸡传染性支气管炎病毒SD060311株和GD080122(肾型)株的全基因组序列分析     

夏业才  杨汉春 《中国家禽》2012,34(16):10-14

通过对鸡传染性支气管炎病毒(IBV)分离株SD060311和GD080122(肾型)的基因组进行RT-PCR扩增和基因序列测定,结果表明其基因组大小分别为27 788 nt和27 407 nt,与已报道的IBV全基因组序列大小不完全一致,但基因组编码基因的顺序与已报道的IBV一致,均为5′cap-Replicase-S-3a-3b-3c-M-5a-5b-N-poly (A)3 ′.与已报道的IBV毒株和火鸡冠状病毒进行比较,绘制系统进化树,结果显示,SD060311和GD080122(肾型)分离株自成一支,与中国分离株BJ株和A2株的亲缘关系最近.本研究不仅丰富了冠状病毒的生物信息数据库,且为进一步研究IBV致病机理和变异机制等奠定了基础.  相似文献   

New severe strains of Melon necrotic spot virus: symptomatology and sequencing     

C. Kubo  E. Nakazono-Nagaoka  K. Hagiwara  H. Kajihara  S. Takeuchi  K. Matsuo  T. U. Ichiki  T. Omura † 《Plant pathology》2005,54(5):615-620

New strains of Melon necrotic spot virus (MNSV), designated MNSV-YS and MNSV-KS, caused much more severe growth retardation on melon plants than MNSV-NH, which was previously reported as the most severe strain of MNSV in Japan. MNSV-YS spread much more quickly than MNSV-NH in infected plants, and induced more severe growth retardation, even though the appearance of necrotic lesions on inoculated cotyledons was much slower. MNSV-KS had properties intermediate between those of the other two strains. The results suggest that faster-spreading strains can multiply more rapidly as a result of lower levels of activity in inducing necrotic lesions in melon plants. The complete sequences of MNSV-YS and MNSV-KS were determined, and an RT–PCR–RFLP method based on these sequences was successfully developed to detect and discriminate between the three strains.  相似文献   

马铃薯晚疫病菌分子遗传及与寄主互作研究          下载免费PDF全文

郭军  屈冬玉  王晓武  金黎平  谢开云 《植物保护》2005,31(2):9-13

近年来马铃薯晚疫病的重新暴发再次引起世界各国极大关注,特别对马铃薯晚疫病菌的分子遗传学的研究,包括病菌基因组遗传、转录和物理图谱的构建,病菌致病的分子机制以及马铃薯-马铃薯晚疫病菌互作分子机制等。本文就近几十年来对马铃薯晚疫病菌在生物学和病理学,分子遗传学等研究方面作简要综述,并对其研究趋势进行了展望。  相似文献   

禾谷镰刀菌和稻瘟病菌基因组中的微卫星序列比较   总被引：1，自引：1，他引：1       下载免费PDF全文

李成云  李进斌  刘林  杨静  周晓罡 《植物保护学报》2005,32(3):251-255

利用禾谷镰刀菌Fusarium graminearum和稻瘟病菌Magnaporthe grisea基因组测序结果,对这两种植物病原真菌基因组中的微卫星(SSR)序列进行了系统地分析和比较.结果表明,在禾谷镰刀菌基因组中,共发现4679个SSR序列,总长度为96.2kb,占基因组全长的0.27%.平均7.7kb碱基中有一个大于15 bp的SSR序列.在稻瘟病菌基因组中共发现16398个SSR系列,其总长度达到330kb,约占整个基因全长的0.85%,平均2.36kb碱基中就分布有1个SSR序列.在禾谷镰刀菌基因组中,数量最多的是五碱基重复序列,其次是六碱基重复序列;稻瘟病菌基因组中数量最多的是单碱基重复序列,其次为三碱基重复序列和五碱基重复序列.两基因组中数量最少的都是二碱基重复序列.尽管这两种植物病原真菌都属子囊菌,基因组大小也十分接近,但无论是在SSR的总体数量上,还是在各类SSR的分布上,两种植物病原真菌都存在十分显著的差别.  相似文献   

Interaction of benzimidazole-N-sulfonamides with the cytochrome b/c1 complex of Pythium aphanidermatum     

Christian Pillonel 《Pest management science》1995,43(2):107-113

Experiments with intact cells and submitochondrial fractions of Pythium aphanidermatum (Edson) Fitz. indicated an interference of benzimidazole-N-sulfonamides with the NADH- or succinate-driven electron transport system between cytochromes b and c. Comparison with Ustilago maydis (DC) Corda and Botrytis cinerea Pers. ex Fr. revealed that this effect is Oomycetes specific. The molecular interaction between benzimidazole-N-sulfonamides and the mitochondrial cytochrome b/c₁ complex from P. aphanidermatum has been investigated. Binding assays with [¹⁴C]52232 RP (dimefluazole) indicated a time- and dose-dependent labelling of two proteins. The molecular mass of one labelled protein and the competition of the binding with antimycin A suggest that benzimidazole-N-sulfonamides interact with the Q₁-centre of cytochrome b. Furthermore, experiments with doubly labelled [³H][¹⁴C]CGA 323103 revealed a possible irreversible inactivation of the b/c₁ complex leading to covalent linkage of the dimethylsulfonamoyl moiety to the target site.  相似文献   

A Universal `One-tube' RT-PCR Protocol for Amplifying Isolates of Bovine Viral Diarrhoea Virus     

Pfeffer M  Freyburg MV  Kaaden OR  Beer M 《Veterinary research communications》2000,24(7):491-503

The increase in the knowledge of the genetic variability of BVDV and the identification of some of the genetic determinants of its pathogenicity require robust and practical tools for rapid molecular characterization of the various genotypes of this virus. This study was undertaken to develop a standard protocol for RT-PCR that allows the amplification of various parts of the genome of BVDV without the need for optimizing each individual reaction. The reaction set-up is very flexible because it consists of two pre-mixes. These are a master mix, with all the required reagents except the desired primers, which are the components of the second pre-mix and are therefore easily interchangeable between the different reactions. After adding any primer-containing pre-mix to the fixed master mix, a non-interrupted cycling protocol led to the generation of amplicons of up to 4 kbp in size in amounts sufficient for subsequent sequencing reactions. The method was applied to five different regions of the BVDV genome: (i) the well-known 5-UTR to differentiate genotypes I and II; (ii) the entire E2 gene, or an approximately 550 bp region within the E2 gene, in order to find the molecular equivalent of antigenic varieties; (iii) the entire structural protein coding region covering the Npro, capsid, E ^RNS, E1 and E2 genes; (iv) a 2.1 kbp region embracing the NS2/3 junction which is known to be cleaved in cytopathic biotypes of BVDV; and (v) the region covering the entire NS4B and NS5A/B genes. All six RT-PCRs were successfully applied using (i) primers with lengths of between 20 and 52 nucleotides, (ii) an aliquot of RNA extracted from either 10⁶ infected bovine embryonal lung cells or the same number of leukocytes from viraemic cattle, and (iii) all the genotype I and II strains of BVDV tested. The technique described was used to generate various Sindbis virus/BVDV recombinants. The correct processing of the amplicon-derived E2 glycoprotein of BVDV strain PT810 was demonstrated by its reaction with a monoclonal antibody in an immunofluorescence assay. Given the variety of RT-PCRs tested, we conclude that this universal protocol may be useful with other RNA viruses.  相似文献   

羊驼Cytb基因序列的测定及其研究   总被引：3，自引：0，他引：3  

董常生  高莉  贺俊平  赫晓燕  耿建军  赵英虎 《畜牧兽医学报》2006,37(12):1254-1258

测定了羊驼线粒体DNA细胞色素b基因部分序列，并与骆驼科其它物种细胞色素b基因进行同源序列比较，分析了碱基组成及变异情况，并用邻接法和最大简约法构建了分子系统树，在分子水平上探讨了羊驼在骆驼科动物中的分类地位。结果表明，羊驼与骆马和美洲驼存在的遗传差异相对比羊驼与原驼大，为传统分类学中的羊驼是原驼驯化以后的一种家养驼的提法提供了分子学依据。  相似文献