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2.
TGEV的sM、M和N基因克隆及特征分析   总被引：3，自引：0，他引：3  
参照(3enBank中收录的TGEV sM、M和N基因序列各设计1对特异引物，经RT-PCR扩增获得了TS株的相应基因片段，分别约为346、932和1217bp，其大小与预计的目的片段相符。与其他毒株的相应基因相比较，并经剪接后，TS株的sM、M和N基因全长分别为248、789和1149bp，各编码82个、262个和382个氨基酸；TS株与Purdue株、TF1株和96-1933株的sM基因核苷酸序列同源性分别为95．2％、92．7％和90．2％；推导氨基酸的同源性分别为95．9％、97．2％、98．8％；与Purdue株、TFl株、TGEVH株和96-1933株的M基因核苷酸序列同源性分别为95．2％、98．0％、99．6％和95．0％；推导氨基酸的同源性分别为97．0％、97．3％、98．5％、93．5％；与Purdue株、TF1株、FS722／70株、Korea株、TO14株、TC；EVH株和96-1933株的N基因核苷酸序列同源性分别为98．1％、97．7％、99．0％、98．3％、99．2％、99．0％和95．9％，推导氨基酸的同源性分别为97．9％、98．4％、99．0％、97．7％、99．5％、96．2％、96．6％。并对TS株基因间的保守序列和sM、M和N基因及其编码的相应氨基酸的结构特征进行了分析，发现sM和N基因在TGEV中保守；并提示在我国不仅存在有2个不同亚基因型的TGEV，而且我国的TGEV可能是输入性的。  相似文献   

3.
We analyzed the nucleotide sequences of the G-L (glycoprotein-large protein) intergenic non-coding region of 33 strains of the rabies virus (RABV) isolated in South Korea in 1998-2010 and compared the sequences with those of previously reported non-Korean strains. The similarities of the nucleotide sequences of the G-L region among all Korean RABV isolates ranged from 97.1 to 100%. Based on the phylogenetic analysis of the G-L region, the Korean RABV isolates were classified into three distinct subgroups with high similarity and were most closely related to the non-Korean NeiMeng1025C isolate, which was isolated from a rabid raccoon dog in eastern China, suggesting that the Korean RABV isolates originate from a rabid raccoon dog in northeastern Asia. Our results indicated that G-L region, as a useful phylogenetic indicator, is equivalent to the nucleoprotein (N) or glycoprotein (G) gene for study of RABV molecular epidemiology and that the Korean RABV isolates showing a few substitutions in the G-L region are continuously circulating in South Korea.  相似文献   

4.
应用RT-PCR方法扩增了猪传染性胃肠炎病毒SC-Y株编码复制酶聚蛋白的ORF1序列,将其进行克隆、序列测定和分析。确认SC-Y株ORF1全长20 053 nt(GenBank收录号DQ390461)。该序列包含2个ORF,其中ORF1a由12 053个核苷酸构成,可编码由4 018个氨基酸组成的多肽,ORF1b由8 036个核苷酸构成,可编码由2 678个氨基酸组成的多肽。对SC-Y与TGEV参考毒株及不同冠状病毒对应区进行序列比较,结果显示,SC-Y株与PUR46-MAD株的同源性最高,ORF1a的核苷酸同源性为99.5%,推导氨基酸同源性为99.2%,ORF1b的核苷酸及推导氨基酸同源性均为99.8%;不同冠状病毒之间ORF1b比ORF1a具有更高的保守性。  相似文献   

5.
Five nonneutralizing monoclonal antibodies (MAb) generated to the virulent Miller strain of transmissible gastroenteritis virus (TGEV) and specific for the S protein were characterized. Competition assays between purified and biotinylated MAb indicated that MAb 75B10 and 8G11 mapped near a new subsite, designated V and 2 MAb, 44C11 and 45A8, mapped to a previously designated subsite D. A fifth MAb mapped between subsites V and E. These MAb were tested with 3 previously characterized MAb to subsites A, E, and F in fixed-cell ELISA and cell culture immunofluorescent assays against 5 reference and 9 field strains of TGEV and 2 US strains (ISU-1 and ISU-3) of porcine respiratory coronavirus (PRCV). Subsites A, E, and F were conserved on all TGEV and PRCV strains examined. The 2 MAb to subsite V, 8G11 and 75B10, reacted only with the Miller TGEV strains (M5C, M6, and M60), except that 75B10 also recognized field strain U328. The MAb 11H8 did not react with 4 field strains or the Purdue strains of TGEV. The 2 MAb to subsite D reacted with all TGEV strains examined, but not with 2 US PRCV strains, 2 European PRCV strains, 1 feline infectious peritonitis virus strain, and 1 canine coronavirus strain. Because of this specificity for TGEV, but not PRCV, these latter 2 subsite D MAb may be useful for the development of competition ELISA to differentiate serologically between TGEV and PRCV infections in swine, similar to the currently used European subsite D MAb.  相似文献   

6.
根据猪传染性胃肠炎病毒（TGEV）和猪呼吸道冠状病毒（PRCV）的基因组核苷酸序列，在S基因（纤突蛋白基因）5′端保守区设计了一对引物P3／P4，该对引物在TGEV扩增跨幅约为2.4kb；而PRCV由于在此区域存在一约0.6kb碱基缺失，扩增跨幅约为1.8kb。用引物P3／P4对TGEV Miller株、Purdue株和PRCV AR310株分别进行RT－PCR，根据RT－PCR扩增片段大小可以直接区分TGEV和PRCV。用引物P3／P4与引物P1／P2作Nested-PCR,提高了该RT－PCR的特异性和敏感性，建立的RT－PCR可为临床上诊断TGEV及调查我国是否存在PRCV感染提供可靠的鉴别手段。  相似文献   

7.
对自海南省、广西省发生鸡传染性支气管炎 (IB)鸡群分离的 4株 IBV分离株 (Ha N- 1/95、Ha N- 2 /95、GX- 1/98、GX- 2 /98)的主要免疫原纤突蛋白 S1基因经 RT- PCR扩增其 5′端约 1.2 kb的目的片段 ,将其插入载体 p MD 18- T中 ,在大肠杆菌中实现目的基因的克隆。对克隆的目的基因经限制性酶切分析及 PCR鉴定后 ,以双脱氧链终止法测定其核苷酸序列 ,并与 Gen Bank中的参考毒株 (H12 0、SD- 1/97和 Holte)相应序列作比较 ,分析其同源性。结果表明 ,Ha N- 1/95、Ha N- 2 /95、GX- 1/98及 SD- 1/97与疫苗株 H12 0的核苷酸序列同源性分别为 99.5 %、99.2 %、97.9%和99.5 % ,其推导氨基酸序列同源性分别为 99.1%、98.9%、96 .9%和 99.2 %。 GX- 2 /98与 Holte株的核苷酸序列同源率为 99.0 % ,其推导的氨基酸序列同源性为 98.6 % ,而与其他中国分离株的核苷酸序列的同源性仅为 70 %左右 ,氨基酸序列的同源性仅为 6 8%左右。  相似文献   

8.
为了全面了解犬冠状病毒（CCoV）分离毒株JS1706和JS1712基因组3'端主要结构蛋白基因和非结构蛋白基因的分子特征,本研究设计了8组引物进行RT-PCR扩增,产物经测序和拼接后,获得了约8.7 kb基因组片段,该基因组结构及其编码蛋白顺序为5'-S-3abc-E-M-N-7ab-3'。对CCoV JS1706、JS1712株8.7 kb基因组核苷酸序列与α冠状病毒属参考毒株的相同区域核苷酸序列进行比对,结果表明,2个分离株与CCoV Ⅱ型参考毒株相似性最高（83.4%~93.1%）,其次为FCoV Ⅱ型参考毒株（87.1%~87.9%）、TGEV参考毒株（86.1%~86.8%）、CCoV Ⅰ型参考毒株（72.0%~72.1%）和FCoV Ⅰ型参考毒株（67.5%~69.9%）。JS1706、JS1712毒株与同属冠状病毒参考株的结构蛋白S、E、M和N蛋白氨基酸相似性分别为46.4%~95.2%、75.6%~100%、82.8%~99.2%和78.5%~99.7%。说明同属内冠状病毒的S基因变异度大,E、M、N基因相对保守。根据基因组3'端8.7 kb核苷酸序列和S蛋白氨基酸序列相似性比对结果,JS1706和JS1712毒株均与泛嗜型原型株CB/05相似性最高,分别为93.0%~93.1%、94.8%~95.2%,其他结构蛋白包括E、M和N氨基酸序列比对也发现与CB/05株的相似性较高,分别为97.6%~100%、92.4%~93.1%和97.9%。S蛋白氨基酸序列的进一步分析表明,JS1706和JS1712毒株的S蛋白N端有一些特有氨基酸,S蛋白氨基酸序列中没有明显的S1/S2蛋白酶切位点（RRARR）,但在958—963位氨基酸有S2'裂解位点特征基序（KRKYRS）。基于S蛋白氨基酸序列构建的系统发育进化树分析显示,CCoV JS1706和JS1712株与CCoV Ⅱa亚型参考毒株和FCoV Ⅱ型参考毒株聚集形成一个分枝。CCoV JS1706和JS1712株非结构蛋白的编码基因ORF3abc和ORF7,其结构、大小与经典疫苗株INSAVC-1相似,无明显插入、缺失和移码突变。本研究有助于深入了解国内CCoV流行毒株的分子特性,为后续分子流行病学调查、诊断试剂和疫苗研发奠定了基础。  相似文献   

9.
A plasmid, pG3BS, containing a cDNA clone from the 5' coding region of the peplomer glycoprotein gene appears to be specific for enteric transmissible gastroenteritis virus (TGEV) strains and for live-attenuated TGEV vaccines. This cDNA probe is used to differentiate porcine respiratory coronavirus (PRCV) isolates from TGEV field and vaccine strains by a slot blot hybridization assay. Probe pG3BS also hybridizes to canine coronavirus (CCV) RNA but does not hybridize to antigenically related feline infectious peritonitis virus (FIPV) RNA. The RNAs of 13 enteric TGEV isolates from the United States, Japan, and England, 4 US-licensed live-attenuated TGEV vaccines, and antigenically closely related CCV were detected by pG3BS. The RNAs of FIPV and 3 US isolates of PRCV did not react with pG3BS but were detected by a TGEV-derived plasmid, pRP3. Pigs infected with either PRCV or TGEV test serologically positive for TGEV antibody by the serum neutralization test. Characterization of the virus circulating in a swine herd by the pG3BS probe will differentiate between an enteric TGEV and a respiratory PRCV infection.  相似文献   

10.
为了解上海地区犬瘟热病毒（Canine distemper virus，CDV）遗传变异情况，本研究采用首尾重叠的11对特异性引物，对CDV上海株SH202003进行RT-PCR扩增，将扩增片段进行反复测序，序列拼接后最终获得了SH202003株全基因组序列，应用Lasergene 7.0和Mega 6.0软件对全基因及H基因进行序列分析，并构建系统进化树。结果显示，SH202003株基因组全长为15 690 bp，编码6种结构蛋白（N、P、M、F、H和L），H和L基因间隔序列为CUA，L和5'端尾随序列为CAA，与Hebei株核苷酸和氨基酸相似性最高，达到98.6%和96.6%，与疫苗株核苷酸相似性在92.2%~94.3%，氨基酸相似性只有82.7%~87.0%；全基因进化树中，SH202003株与流行野毒株在同一分支，与疫苗株在不同的分支；H基因同样与Hebei株亲缘关系最近，核苷酸和氨基酸相似性分别为98.7%和99.5%，与疫苗株Snyder Hill、CDV3、Convac及Onderstepoort亲缘关系较远；SH202003株处于Asia-1型分支，属于Asia-1型强毒株；SH202003株具有9个潜在N-糖基化位点，与强毒株Hebei株一致。研究表明，上海株SH202003属于CDV强毒株，为Asia-1型，其H基因序列相对保守，具有9个潜在N-糖基化位点，但是全基因序列存在较多突变，与疫苗株的匹配度较差，可能是免疫犬依然发生犬瘟热的主要原因。  相似文献   

11.
猪呼吸道冠状病毒S1基因的克隆与序列分析   总被引：1，自引：0，他引：1  
以猪呼吸道冠状病毒(PRCV)AR310毒株为研究对象,观察PRCV在两种不同细胞中的生长繁殖情况,在猪肾原代细胞中生长良好,在PK15细胞中未见生长。参考GenBbank中已发表的基因序列,设计和合成一对引物,通过RT-PCR扩增出PRCVAR310株的S1基因,克隆到pMD18-T载体中并测序。结果表明与PRCVDQ811787核苷酸同源性为100%,与M94096、M94097的同源性分别为95.2%和95.0%;氨基酸序列分析表明,试验测序的PRCVS1基因氨基酸序列与Genebank中DQ811787同源性为100%,与M94096、M94097的同源性较高分别为95.2%和95.6%。  相似文献   

12.
We detected transmissible gastroenteritis virus (TGEV) antibodies in pig farms in Tochigi prefecture, although the farms had no past record of TGEV vaccination or TGE. Among the farms, Farm A showed a high antibody incidence. We could not confirm if either TGEV or porcine respiratory coronavirus (PRCV) induced the antibodies, since conventional tests failed to discriminate PRCV from TGEV. Therefore, we conducted virological and serological examinations of this farm for 4 years to establish the etiology - TGEV or PRCV. Although no TGEV was detected, PRCVs were isolated from the nasal samples of pigs. Using a commercial ELISA kit, it was found that the antibodies detected in pigs of all the raising stages and sows were raised against PRCV but not TGEV. The phylogenetic analysis of the nucleotide sequences of the isolates showed that they were closely related to each other, and formed a separate cluster apart from the U.S.A. and European strains. In Cesarean-derived, colostrums-deprived piglets inoculated with a PRCV isolate, no clinical signs were seen, and the viruses were mainly isolated from the nasal samples. Moreover, viral genes were detected from the nasal sample of the contact pig. The result suggested that PRCV infection was located in the nasal cavity of pigs, and horizontal transmission easily occurs. From these results, PRCVs with different origins from the exotic PRCVs might be prevalent in pig farms in Japan.  相似文献   

13.
Japanese encephalitis virus (JEV) is the leading cause of viral encephalitis in Asia and domestic pigs serve as the amplifying hosts. In the present study, the full genomic sequences of two JEV strains (HEN0701 and SH0601) isolated from pigs in China were determined and compared with other 12 JEV strains deposited in GenBank. These two strains had an 88.8% nucleotide sequence similarity and 97.9% deduced amino acid sequence homology. HEN0701 had high nucleotide sequence and high amino acid sequence identity with genotype I (GI) strains, while SH0601 had high nucleotide sequence and high amino acid sequence identity with GIII strains at both the gene and full genome levels. Further phylogenetic analysis showed that HEN0701 belonged to the JEV GI group and SH0601 was classified as a GIII strain. Analysis of codon usage showed there were a few differences between the GI and GIII strains in nucleotide composition and codon usage for the open reading frames.  相似文献   

14.
猪瘟野毒混合毒实验室感染的研究   总被引：7，自引：0，他引：7  
本研究以本所近年来所分离的高、中、低三株不同毒力（HeNXH3.98、JL1.94和FJFQ1.99）的猪瘟野毒混合毒对敏感猪进行实验室感染试验，利用HCFA、RT－PCR及序列测定进行检测和分析，结果2头试验猪均在感染后2周发病死亡，表现典型的猪瘟临床症状；序列测定及分析结果表明感染后1周及2周2头实验感染猪所分离的病毒E2基因主要抗原编码区序列完全一致，核苷酸及氨基酸同源性均为1005；与感染毒株序列比较，2头试验感染猪所分离的病毒E2基因主要抗原编码区序列与JL1.94株序列完全一致，核苷酸及 在酸同源性均为100％，且基因分群在同一群；而与HeNXH3.98和FJFQ1.99株序列则有一定的差异，且不在同一基因群或基因亚群，说明在多个猪瘟病毒存在的情况下，敏感猪存在对猪间病毒的优势选择。本试验的条件下3株不同和的猪瘟野毒混合感染以中等毒力毒株JL1.94为优势毒株。  相似文献   

15.
The nucleoprotein (N) and glycoprotein (G) of 11 Korean rabies virus (RABV) isolates collected from animals diagnosed with rabies between 2008 and 2009 were subjected to molecular and phylogenetic analyses. Six isolates originated from domestic animals (cattle and dogs) and five were obtained from wild free-ranging raccoon dogs. The similarities in the nucleotide sequences of the N gene among all Korean isolates ranged from 98.1 to 99.8%, while those of the G gene ranged from 97.9 to 99.3%. Based on the nucleotide analysis of the N and G genes, the Korean RABV isolates were confirmed as genotype I of Lyssavirus and classified into four distinct subgroups with high similarity. Phylogenetic analysis showed that the Korean isolates were most closely related to the non-Korean NeiMeng1025B and 857r strains, which were isolated from rabid raccoon dogs in Eastern China and Russia, respectively. These findings suggest that the Korean RABV isolates originated from a rabid raccoon dog in Northeastern Asia. Genetic analysis of the Korean RABV isolates revealed no substitutions at several antigenic sites, indicating that the isolates circulating in Korea may be pathogenic in several hosts.  相似文献   

16.
A competitive inhibition ELISA was developed to detect non-neutralizing antibodies to the peplomer protein of transmissible gastroenteritis virus (TGEV) in porcine sera using a monoclonal antibody as an indicator. It was demonstrated that field strains of the TGEV-related porcine respiratory coronavirus (PRCV) did not induce this antibody, whereas the Miller strain and field strains of TGEV did. The sensitivity of the competitive inhibition ELISA appeared to be similar to that of the virus neutralization (VN) test. The test enables differentiation of pigs which were previously infected with TGEV or PRCV and which cannot be distinguished by the classical anti-TGEV neutralization test. The present test is useful for selective serodiagnosis.  相似文献   

17.
我国近期7株猪瘟流行野毒E2基因变异研究   总被引：1，自引：0，他引：1  
应用RT PCR 和nPCR 扩增了7 株国内近期(2001 年-2003 年)流行的猪瘟野毒E2 基因,分别克隆至pGEM T 载体并对其进行了核苷酸序列测定及氨基酸序列推导,同时将其与C 株、Alfort 株、Brecsia 株进行了同源性比较及遗传进化分析,构建了CS FV的遗传发生树,并对E2 结构与功能进行了分析。所测7株野毒均包括完整的信号肽序列及部分跨膜区在内的1 170 bp,与C株、Alfort株、Brescia 株核苷酸序列同源性分别为91.6%~94.5%、89.2%~92.7%、85.9%~89.3%,氨基酸同源性分别为91.2%~95.8%、88.9%~92.0%、84.0%~90.1%;而7株野毒之间的差异很小,其核苷酸序列同源性为95.8%~99.7%,氨基酸同源性为96.3%~99. 1%。所绘制的遗传发生树分为2个组群,所测得7 株流行野毒均属于第1 群,而且可分为两亚群,与C 株在同一亚群。同时对主要抗原区氨基酸位点变异进行了分析,对其抗原决定簇的变异情况进行了推测。  相似文献   

18.
The purpose of this study was to investigate the genetic features of canine coronavirus (CCV) strains detected in Korea. M gene sequences obtained for isolates from 22 dogs with enteritis over a 5-year period were evaluated. Sequence comparison revealed that the 22 Korean CCV strains had an 87.2 to 100% nucleotide homology. Comparing to the typical reference CCV strains (type II), the nucleotide sequence of Korean strains had homology ranged from 86.3% to 98.3% (89.1% to 99.2% for the amino acid sequence) and 87.7% to 97.8% (92.4% to 100% for the amino acid sequence) when compared to FCoV-like CCV strains (type I). Three amino acid variations in the M gene were characteristic for the Korean CCV strains. Phylogenetic analysis demonstrated that the 22 Korean CCV strains belonged to four typical CCV clusters (i.e., a unique Korean CCV cluster, a type II and transmissible gastroenteritis virus cluster, an intermediate cluster between type I and II, and a type I cluster). This study was the first to identify genetic differences of the M gene from Korean CCV strains and provided a platform for molecular identification of different Korean CCV strains.  相似文献   

19.
为了解1株圈养小熊猫源犬瘟热病毒（CDV）GD-1的遗传变异情况,通过RT-PCR方法对该株CDV进行H、F基因的克隆、测序及序列分析。结果显示：该分离株的H基因序列与GenBank中丹麦报道的登录号为GU266280的犬源CDV毒株的核苷酸序列相似性最高,为96%;F基因序列与巴西报道的登录号为KY057355的犬源CDV的核苷酸序列相似性最高,为95.7%。下载CDV代表毒株序列进行遗传演化、氨基酸序列比对及分子特征分析。结果显示：H蛋白共有8个潜在的N-糖基化位点,分别位于19、149、309、391、422、456、587、603位点;H蛋白的SLAM受体结合位点氨基酸序列与欧亚野生型毒株一致,与疫苗株相比,530、549位氨基酸不同,与其他CDV参考毒株H蛋白相比还存在24、41等9处氨基酸位点发生明显变异,与标准强毒株A75/17的氨基酸相似性为95.2%,与Onderstepoort、Convac等5株疫苗株的氨基酸序列相似性为88.2%~89.3%;F蛋白共有6个N-糖基化位点,分别位于62、108、141、173、179、517位,与Onderstepoort等疫苗株氨基酸相似性为89.1%~89.7%;与其他参考毒株相比还存在115、130等11处氨基酸发生变异;构建基于H、F基因的遗传进化树,结果显示：该毒株位于Asia-4型的一个小的进化分支,这与目前我国流行毒株主要位于Asia-1型存在明显不同。本研究首次报道了小熊猫源的Asia-4基因型CDV野毒株,并对毒株的H及F基因进行了序列分析,对于了解我国CDV流行株的遗传变异情况、流行病学调查、疾病防控及疫苗研发等具有重要意义。  相似文献   

20.
本试验对2012年从北京地区约克夏犬体内分离得到的伪狂犬病病毒(PRV)BJ/YT株主要毒力基因gE和TK的分子特征和进化关系进行了分析。结果显示,BJ/YT株gE基因与参考序列的核苷酸和氨基酸同源性分别为98.9%～100.0%和98.3%～100.0%;TK基因核苷酸和氨基酸同源性分别为99.2%～99.9%和99.0%～100.0%。BJ/YT株与同期河北猪源分离株进化关系较近,各毒株之间同源性高,并且存在一致的核苷酸突变位点;与其他参考序列比对分析结果显示,BJ/YT株主要毒力基因存在变异位点,但这些位点均不在已知的主要功能区和抗原表位区内。因此,从分子流行病学角度来看,BJ/YT毒株是近年北京及其周边地区PRV流行毒株,但gE和TK基因的变异对流行毒株的毒力无明显影响。  相似文献   

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