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1.
Kagawa S Nagano Y Tazumi A Murayama O Millar BC Moore JE Matsuda M 《Veterinary research communications》2006,30(4):343-355
The primer set for 16S rDNA amplified an amplicon of about 1500 bp in length for three strains of Taylorella equigenitalis (NCTC11184T, Kentucky188 and EQ59). Sequence differences of the 16S rDNA among the six sequences, including three reference sequences,
occurred at only a few nucleotide positions and thus, an extremely high sequence similarity of the 16S rDNA was first demonstrated
among the six sequences. In addition, the primer set for 16S-23S rDNA internal spacer region (ISR) amplified two amplicons
about 1300 bp and 1200 bp in length for the three strains. The ISRs were estimated to be about 920 bp in length for large
ISR-A and about 830 bp for small ISR-B. Sequence alignment of the ISR-A and ISR-B demonstrated about 10 base differences between
NCTC11184T and EQ59 and between Kentucky188 and EQ59. However, only minor sequence differences were demonstrated between the ISR-A and
ISR-B from NCTC11184T and Kentucky188, respectively. A typical order of the intercistronic tRNAs with the 29 nucleotide spacer of 5'-16S rDNA-tRNAIle-tRNAAla-23S rDNA-3' was demonstrated in the all ISRs. The ISRs may be useful for the discrimination amongst isolates of T. equigenitalis if sequencing is employed. 相似文献
2.
家蚕消化道来源蒙氏肠球菌的鉴定 总被引：1，自引：1，他引：0
研究了从家蚕消化道内分离出的4株肠球菌(C1、GC、FD、A20)的生理生化特征和16S rDNA序列,并与肠球菌种特异性探针序列进行了比较。生理生化特征测定结果表明,除A20外,C1、GC和FD与蒙氏肠球菌种的特征基本一致。由16S rDNA序列分析结果可知,分离菌株均与蒙氏肠球菌(Ent.mundtiiAJ301836)有高度同源性,在系统发育树内位于同一分支。分析肠球菌种特异性探针序列,分离菌株的16S rDNA含有与蒙氏肠球菌种特异性探针完全相同的序列。因此认为家蚕消化道内存在蒙氏肠球菌。 相似文献
3.
Thirty-five isolates of Pasteurella multocida from the vagina and respiratory tract of sheep were compared by analysing their capsular polysaccharide types and outer membrane protein profiles. The phylogenetic relationships of selected isolates with respect to reference strains of P. multocida were also determined by comparative 16S rRNA sequence analysis. Three capsular types, A, D and F, and three major outer membrane protein types were identified, and there were four different combinations of these characteristics which probably marked four individual clones of P. multocida. Strains representing three of these clones were recovered from cases of ovine pneumonia, whereas isolates of the fourth clone were associated exclusively with the vagina of healthy ewes and the liver of a dead septicaemic lamb on the same farm. Analysis of the 16S rRNA sequences showed that there was 100 per cent identity between representative pneumonic isolates and reference strains of P. multocida subspecies galliseptica and P. multocida subspecies multocida. The 16S rRNA genes of representative vaginal and liver isolates from the same farm were identical but differed from the other strains at one nucleotide position, providing strong evidence that the vaginal and liver isolates represent a distinct subpopulation of P. multocida. 相似文献
4.
Kokotovic B Friis NF Ahrens P 《Journal of veterinary medicine. B, Infectious diseases and veterinary public health》2002,49(5):245-252
Mycoplasma hyospnoviae strains from Denmark, Germany, Japan, Sweden, the Netherlands and the UK were examined for variations in the genomic DNA and within the 16S ribosomal RNA (rRNA) gene. Variations in the chromosomal DNA among 57 isolates recovered from the respiratory tract and joints of pigs, were investigated by analysis of amplified fragment length polymorphisms of the Bg/II and MfeI restriction sites and by pulsed-field gel electrophoresis of a BssHII digest of chromosomal DNA. Both methods allowed unambiguous differentiation of the analysed strains and showed similar discriminatory potential for the differentiation of M. hyosynoviae isolates. Concordant results obtained with the two whole-genome fingerprinting techniques evidence the considerable intraspecies genetic heterogeneity of M. hyosynoviae. Sixteen field strains of M. hyosynoviae and the type strain S16(T) were further examined for variation within the 16S rRNA gene. Ten field strains possessed the 16S rDNA sequences identical to the type strain, while the remaining six strains had sequences that differed by one to two nucleotides from that obtained from the type strain. 相似文献
5.
The objective of this study was to assess whether nucleotide substitutions in the 16S rDNA sequence of selected Brachyspira hyodysenteriae isolates could explain differences in doxycycline minimal inhibitory concentrations (MICs). The main part of the 16S rRNA gene was sequenced and compared for 19 isolates with different doxycycline MICs. A mutation in the 16S rRNA gene at the position corresponding to 1058 in Escherichia coli has been shown to cause tetracycline resistance in other bacteria. In the B. hyodysenteriae sequences a G1058C mutation was found for all isolates with increased doxycycline MICs whereas all susceptible isolates had the wild type sequence. 相似文献
6.
为筛选用于防制奶牛子宫炎的乳酸菌菌株,本试验选取产后30~50 d的健康奶牛,采集子宫颈口处分泌物,利用MRS选择性培养基进行乳酸菌初步筛选。纯化后的菌株进行革兰氏染色镜检,将具有乳酸球菌或乳酸杆菌典型形态的疑似菌株进行针对性生化鉴定。提取分离菌株的基因组DNA,扩增其16S rDNA全序列并测序,将所得序列与NCBI数据库中的相应序列进行同源性比对分析。采用琼脂扩散法检测分离菌株对致病性金黄色葡萄球菌和大肠杆菌的抑菌活性,并检测分离菌株对山羊上皮细胞的黏附活性。结果显示,经染色镜检、生化鉴定和16S rDNA测序分析,得到13株乳酸菌,其中5株具有较强抑菌活性,6株具有较强黏附上皮细胞的能力,7、12和23号3株兼有良好的抑菌活性和黏附上皮细胞能力。综上,本试验建立了健康奶牛子宫颈中乳酸菌的筛选方法,得到3株具有良好益生特性的乳酸菌,为制备微生态制剂提供了基础材料,对防制奶牛子宫炎具有重要意义。 相似文献
7.
Mycoplasma hyosynoviae strains from Denmark, Germany, Japan, Sweden, the Netherlands and the UK were examined for variations in the genomic DNA and within the 16S ribosomal RNA (rRNA) gene. Variations in the chromosomal DNA among 57 isolates recovered from the respiratory tract and joints of pigs, were investigated by analysis of amplified fragment length polymorphisms of the BglII and MfeI restriction sites and by pulsed‐field gel electrophoresis of a BssHII digest of chromosomal DNA. Both methods allowed unambiguous differentiation of the analysed strains and showed similar discriminatory potential for the differentiation of M. hyosynoviae isolates. Concordant results obtained with the two whole‐genome fingerprinting techniques evidence the considerable intraspecies genetic heterogeneity of M. hyosynoviae. Sixteen field strains of M. hyosynoviae and the type strain S16T were further examined for variation within the 16S rRNA gene. Ten field strains possessed the 16S rDNA sequences identical to the type strain, while the remaining six strains had sequences that differed by one to two nucleotides from that obtained from the type strain. 相似文献
8.
采用16S rDNA序列分析及ERIC-PCR对从贵州修文贵长猕猴桃枝条、叶片、花蕾分离到的35株猕猴桃溃疡病菌进行遗传多样性分析。通过16S rDNA序列分析,鉴定所分离的病原菌为Pseudomonas syringae pv.actinidiae,并运用ERIC-PCR分析病菌群体的遗传多样性分析,相似系数为0.808时,35株菌株分为4个类群,85.7%的菌株属于第一个类群,且菌株无明显的采集地、采集部位的聚类;表明修文猕猴桃溃疡病菌具有丰富的遗传多样性;此研究为溃疡病的检测、防治提供科学依据。 相似文献
9.
10.
Zhongfang TAN Huili PANG Yuheng DUAN Guangyong QIN Yimin CAI 《Animal Science Journal》2010,81(6):706-713
Twenty strains of lactic acid bacteria were isolated from six traditional Tibetan Qula cheese made from yak which were collected from northwest China, including Tibet, Qinghai and Gansu province. These isolates were subjected to phenotypic and genetic analyses. All isolates were Gram‐positive and catalase‐negative cocci that produced gas from glucose and formed D(–) isomer of lactate. Most isolates were able to grow in de Man, Rogosa and Sharpe (MRS) broth at pH values 3.0–9.0 and in 6.5% NaCl (w/v). According to analytical profile index 50 carbohydrates (API 50 CH) fermentation patterns of amygdalin and arabinose, these isolates were divided into three groups (A to C). On the basis of the phylogenetic trees of 16S ribosomal DNA (rDNA) sequence, the strains in all groups were placed in the cluster making up the genus Leuconostoc, which showed that all strains should belong to Leuconostoc species. Strains in Group A and Group B exhibited similarity of 16S rDNA sequence of over 99% to Leuconostoc mesenteroides, indicating that they each comprised a single species. Strains in group C were assigned to the Leuconostoc pseudomesenteroides and their 16S rDNA sequence showed a similarity of over 99%. This study demonstrated that Leuconostoc was the dominant member among lactic acid bacteria in Qula cheese. 相似文献
11.
12.
10株桑黄菌基于rDNA ITS序列的分子鉴定 总被引：1，自引：0，他引：1
建立桑黄菌的分类学基本框架,可为桑黄菌的开发利用奠定基础。利用rDNAITS序列分析技术,在分子水平上对采自秦巴山区的9株野生桑黄菌和1株实用桑黄菌进行分类鉴定。以真菌rDNAITS序列分析中的通用引物ITS1和ITS4,分别对10个菌株的基因组DNA模板PCR扩增出目的片段,将扩增产物割胶纯化、克隆并测序,获得10个菌株的rDNAITS序列,并结合GenBank中已登录桑黄菌的rDNAITS同源序列,应用MEGA4.1软件和Neighbor-Joining法,分别计算遗传距离及构建系统发育进化树分析亲缘关系。结果表明10株桑黄菌均为针层孔菌属(Phellinus),其中:S1、S4、S6、Rh、Sc菌株初步鉴定为鲍氏针层孔菌(Phellinus baumii);S2、S3、S5、S7、Gy菌株初步鉴定为裂蹄木层孔菌(Phellinus linteus)。 相似文献
13.
Tanaka A Hoshinoo K Hoshino T Tagawa Y 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2005,67(3):255-262
Nucleotide sequences of 16S rDNA and rpoB gene of 25 bovine and 6 ovine Histophilus somni strains were determined to detect subtle differences between the host animal species. The 1465 nucleotide residues of the 16S rDNA exhibited levels of sequence similarities of 99.4% or more. The high sequence similarity of the 16S rDNA of recently described species H. somni was confirmed in the 31 strains from cattle and sheep. These results suggested that the intra-specific diversity of 16S rDNA was limited in bovine and ovine strains of H. somni. The specific association of strains was also observed in the 311 bp region of rpoB gene which sequence similarities were 98.6% or more. However, the phylogenetic tree analysis of the rpoB gene showed that the ovine strains appeared to form a subgroup recovered in 70% of the bootstrap trees. In the 311 bp region of the ovine strains, a HincII restriction endonuclease site was detected. The PCR-amplified rpoB DNA of 46 bovine and 20 ovine H. somni strains were examined for the digestion with HincII. As the results, 17 strains of ovine strains were cleaved by the enzyme but none of the bovine strains appeared to possess the restriction site. The restriction enzyme analysis of rpoB gene may be useful to differentiate ovine strains from bovine strains of H. somni. 相似文献
14.
为探明贵州省某猪场引起猪体表脓肿的原因,本研究对该猪场脓肿部位的脓汁进行细菌分离培养,并对分离所得的细菌进行革兰氏染色镜检、生化试验、药敏试验、16S rDNA序列分子分析及动物感染试验。结果显示,从脓汁中成功分离到了3株菌落形态不一的菌株,分别为金黄色葡萄球菌、化脓隐秘杆菌、停乳链球菌类马亚种,根据分离地点和时间将其分别命名为GZGP2018-1、GZGP2018-2和GZGP2018-3;GZGP2018-1菌株与NCBI上金黄色葡萄球菌的同源性高达99.9%,GZGP2018-2菌株与NCBI上化脓隐秘杆菌的同源性高达99.9%,GZGP2018-3菌株与NCBI上停乳链球菌类马亚种的同源性高达100%;3株分离菌株对头孢拉定、环丙沙星、磺胺间甲氧嘧啶和氟苯尼考较敏感,对青霉素类药物和红霉素耐药;3株分离菌株对试验小鼠均具有致死性。本研究为该猪场猪体表脓肿的发病原因、实验室诊断方法及日常防控提供了理论参考。 相似文献
15.
为了解江西地区猪圆环病毒2型（PCV-2）的流行和进化情况,根据GenBank上已发表的PCV-2全基因序列设计1对引物,PCR扩增后得到9条PCV-2全基因序列,并对其全基因序列核苷酸和蛋白序列进行分析,绘制遗传进化树。结果表明,江西地区流行的9株PCV-2中,基因组序列全长分为8株1 767 bp和1株1 768 bp,9株PCV-2的核苷酸同源性为94.7%~99.9%,与GenBank己发表的PCV-2分离株全基因组同源性介于94.3%~99.8%之间,而9株PCV-2的ORF1核苷酸序列同源性为96.9%~100.0%。ORF2和ORF3编码的蛋白氨基酸序列存在部分位点突变。遗传进化树显示为3种基因型：5株PCV-2b、3株PCV-2d、1株PCV-2a。本研究有助于江西地区PCV-2的监测和防制。 相似文献
16.
In order to understand the epidemiology and evolution of PCV-2 in Jiangxi province, a pair of primers was designed according to the PCV-2 gene sequence published in GenBank. After PCR amplification, we got the whole genome sequence of 9 strains PCV-2 isolates, and the nucleotide and protein sequences were analyzed, the genetic evolutionary tree was constructed. The results showed that the complete genome of 8 out of the 9 strains were 1 767 bp in length and one strain was 1 768 bp. By analyzing the whole genome sequences of the nucleotide,the homology of nucleotide sequences of the 9 strains was 94.7% to 99.9%.Compared with other whole genome sequences of PCV-2 in GenBank, the homology was 94.3% to 99.8%. The homology of nucleotide sequences of the ORF1 of the 9 strain was 96.9% to 100.0%. ORF2 and ORF3 encoding protein amino acid sequence had some locus mutation. Phylogenetic tree analysis showed that the 9 strains could be divided into 3 genotypes,5 strains belonged to PCV-2b, 3 strains belonged to PCV-2d, and 1 strain belonged to PCV-2a. This study was helpful to monitor and control of PCV-2 in Jiangxi province. 相似文献
17.
Fellström C Karlsson M Pettersson B Zimmerman U Gunnarsson A Aspan A 《Veterinary microbiology》1999,70(3-4):225-238
Two type/reference strains of Brachyspira (B.) hyodysenteriae, 14 Belgian and German indole negative, and 14 Belgian, German and Swedish indole positive field isolates of strongly β-haemolytic intestinal spirochaetes were compared by pulsed-field gel electrophoresis (PFGE) patterns, biochemical reaction patterns, 16S rDNA sequences and MIC determinations of six antibacterial substances. Three tests for indole production, including a spot indole test, were compared with congruent results. All field isolates were classified as B. hyodysenteriae due to a high genetic and phenotypic similarity with the type strains. The Belgian and German indole negative isolates had identical and unique PFGE patterns for the tested restriction enzymes MluI and SalI, as well as identical 16S rDNA sequences, and they could not be differentiated by any of the methods used. Seven unique PFGE patterns were achieved from the 14 indole positive field isolates. The patterns were identical and unique for epidemiologically related isolates. Type/reference strains and isolates without known relation to other tested isolates showed unique banding patterns. The MICs of tylosin, tiamulin, erythromycin, clindamycin, carbadox and virginiamycin were determined in broth for all isolates. In contrast to Belgian and German isolates, the majority of the Swedish field isolates were susceptible to tylosin, erythromycin and clindamycin. Probable pathways of infection for some of the Swedish isolates were determined. The PFGE patterns of epidemic clones of B. hyodysenteriae remained stable for a period of up to 8 years. In vivo development of resistance to macrolide and lincosamide antibiotics due to use of tylosin was clearly indicated for two epidemic clones. 相似文献
18.
9株鸡毒支原体29 Ku多肽基因的克隆与序列分析 总被引：4，自引：0，他引：4
根据已发表的鸡毒支原体(MG)S6株29Ku多肽基因序列设计了1对引物,以9株(广西分离株5株、标准株4株)DNA为模板进行PCR扩增,均得到802bp的特异性片段,将9株MG PCR产物纯化后克隆到pMD18-T载体上,得到重组质粒.重组质粒经PCR法和EcorⅠ、SalⅠ双酶切等方法鉴定后,测定了9株29 Ku多肽基因序列,并在基因库中S6标准株的29 Ku多肽基因序列进行分析比较.结果表明,5株分离株与5株标准株29Ku多肽基因核苷酸序列同源性分别为94.4%～99.9%,推导的氨基酸同源性分别为89.7%～99.2%.从各毒株的进化分析表明,5个分离株与标准强毒株S6、A5969、K1501和PG31强毒株间遗传距离较近,而5个分离株与标准株F疫苗株间遗传距离则较远. 相似文献
19.
旨在分析猪流产胎儿中猪圆环病毒3型(porcine circovirus type 3,PCV3)的感染及其遗传进化情况。对2015—2017年采集的湖南省680份猪流产胎儿病料样品进行PCV3检测、扩增和测序,并利用生物信息学软件对获得的序列进行遗传进化分析。结果显示,猪流产胎儿样品中PCV3阳性率为24.4%(166/680),其中,2015—2017年阳性率分别为18.2%(26/143)、22.7%(54/238)和28.8%(86/299)。从PCV3阳性样本中获得了1株PCV3基因组全长序列,命名为PCV3/CN/Hunan-57(GenBank序列登录号为MZ934695),与国内外毒株基因组序列相比,相似性为97.8%~99.2%;获得了5株PCV3 ORF2基因序列,它们的核苷酸和氨基酸相似性为97.5%~98.3%和96.7%~99.7%,与国内外参考毒株ORF2基因序列相比,其核苷酸和氨基酸相似性为96.3%~99.2%和96.8%~100%。基于ORF2基因序列构建遗传进化树和进行多重序列比对,发现获得的PCV3阳性序列分别属于PCV3a(1株)和PCV3c(4株),并鉴定出T100A、G113S和A184S突变位点。综上表明,猪流产胎儿中PCV3感染率较高,且存在不同类型的PCV3毒株感染,为后续深入研究PCV3遗传变异及其相关致病性提供了重要参考信息。 相似文献
20.
Nucleotide sequence and genetic analysis of the leader region of Canadian, American and European equine arteritis virus isolates. 
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下载免费PDF全文 A Kheyar G St-Laurent M Diouri D Archambault 《Canadian journal of veterinary research》1998,62(3):224-230
The extreme 5' end, the entire leader sequence of the Arvac vaccine strain, and 10 equine arteritis virus (EAV) isolates, including the ATCC Bucyrus reference strain and 5 Canadian field isolates, were determined and compared at the primary nucleotide and secondary structure levels. The leader sequence of eight EAV isolates, including the Bucyrus reference strain, and the leader sequence of the Arvac vaccine strain was determined to be 206 nt in length (not including the putative 5' cap structure-associated nucleotide) whereas those of the 86AB-A1 and 86NY-A1 isolates were found to be 205 and 207 nt in length, respectively. The sequence identity of the leader sequences, between the different isolates and the Bucyrus reference strain, ranged from 94.2 to 98.5%. Phylogenetic analysis and estimation of genetic distances, based on the leader nucleic acid sequences, showed that all EAV isolates/strains are likely to represent a large phylogenetically-related group. An AUG start codon found at position 14 in all EAV isolates/strains could initiate an open reading frame (ORF) that could produce a polypeptide of 37 amino acids, except for the 86NY-A1 isolate where the intraleader polypeptide would contain 54 amino acids. Computer-predicted RNA secondary structures were identified in the 11 EAV leader regions analyzed. All EAV isolates/strains showed 3 conserved stem-loops (designated A, B and C). An additional conserved stem-loop (D) was observed in 7 EAV isolates, including the Bucyrus reference strain. The leader region distal to stem-loop D did not contain conserved sequences or stem-loop structures common to the EAV isolates/strains. 相似文献