Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm     

Fernando Brito Lopes  Fernando Baldi  Ludmilla Costa Brunes  Marcos Fernando Oliveira e Costa  Eduardo da Costa Eifert  Guilherme Jordão Magalhães Rosa  Raysildo Barbosa Lobo  Cláudio Ulhoa Magnabosco 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2023,140(1):1-12

This study was carried out to evaluate the advantage of preselecting SNP markers using Markov blanket algorithm regarding the accuracy of genomic prediction for carcass and meat quality traits in Nellore cattle. This study considered 3675, 3680, 3660 and 524 records of rib eye area (REA), back fat thickness (BF), rump fat (RF), and Warner–Bratzler shear force (WBSF), respectively, from the Nellore Brazil Breeding Program. The animals have been genotyped using low-density SNP panel (30 k), and subsequently imputed for arrays with 777 k SNPs. Four Bayesian specifications of genomic regression models, namely Bayes A, Bayes B, Bayes Cπ and Bayesian Ridge Regression methods were compared in terms of prediction accuracy using a five folds cross-validation. Prediction accuracy for REA, BF and RF was all similar using the Bayesian Alphabet models, ranging from 0.75 to 0.95. For WBSF, the predictive ability was higher using Bayes B (0.47) than other methods (0.39 to 0.42). Although the prediction accuracies using Markov blanket of SNP markers were lower than those using all SNPs, for WBSF the relative gain was lower than 13%. With a subset of informative SNPs markers, identified using Markov blanket, probably, is possible to capture a large proportion of the genetic variance for WBSF. The development of low-density and customized arrays using Markov blanket might be cost-effective to perform a genomic selection for this trait, increasing the number of evaluated animals, improving the management decisions based on genomic information and applying genomic selection on a large scale.  相似文献   

Opportunities for chiral agrochemicals     

Alan Williams 《Pest management science》1996,46(1):3-9

Chiral compounds account for 25% of all agrochemical compounds used commercially and for 26% of the total value of the world agrochemical market. However, those sold in single isomer form contribute only 7% to the market value despite many potential advantages in terms of regulatory, intellectual property and marketing benefits. Limited access to chiral raw materials and economic synthesis routes are key reasons why single isomers are less common than they might be. The development of more chiral routes will encourage the development of single isomer compounds to capitalise on their advantages.  相似文献   

Origin of resistance to pyrethroids in the redlegged earth mite (Halotydeus destructor) in Australia: repeated local evolution and migration     

Qiong Yang  Paul A Umina  Gordana Ra&#x;i&#x;  Nicholas Bell  Jichao Fang  Alan Lord  Ary A Hoffmann 《Pest management science》2020,76(2):509-519

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Comparison between vegetation indices for detecting spatial and temporal variabilities in soybean crop using canopy sensors     

Morlin Carneiro  Franciele  Angeli Furlani  Carlos Eduardo  Zerbato  Cristiano  Candida de Menezes  Patricia  da Silva Gírio  Lucas Augusto  Freire de Oliveira  Mailson 《Precision Agriculture》2020,21(5):979-1007

Precision Agriculture - Crop monitoring through remote sensing techniques enable greater knowledge of average variability in crop growth. Canopy sensors help provide information on the variability...  相似文献   

Prediction of Genetic Gain in Sweet Corn using Selection Indexes     

da Silva  Isadora Gonçalves  Castoldi  Renata  de Oliveira Charlo  Hamilton César  de Souza Miranda  Mateus  Nunes  Thaíssa Dias Cardoso  Costa  Luciene Lacerda  Lemes  Ernane Miranda 《Journal of Crop Science and Biotechnology》2020,23(2):191-196

Journal of Crop Science and Biotechnology - The cultivation of sweet corn is expanding in Brazil, but there are serious constraints about the availability of commercial cultivars. The selection of...  相似文献   

Hybridisation in kiwi (Apteryx; Apterygidae) requires taxonomic revision for the Great Spotted Kiwi     

Lara D.Shepherd  Alan J.D.Tennyson  Hugh A.Robertson  Rogan M.Colbourne  Kristina M.Ramstad 《中国鸟类》2021,(2):195-207

Background: Kiwi (Apteryx spp.) are flightless ratites from New Zealand whose numbers and distributions have declined following human arrival. Some of the kiwi ...  相似文献   

INTEGRATED CROP-LIVESTOCK SYSTEMS: LESSONS FROM NEW YORK,BRITISH COLUMBIA,AND THE SOUTH-EASTERN UNITED STATES     

Alan FRANZLUEBBERS  Derek HUNT  Gary TELFORD  Shabtai BITTMAN  Quirine KETTERINGS 《农业科学与工程前沿(英文版)》2021,8(1):81-96

• Livestock production in North America has moved to fewer farms with greater inventories • Land application of livestock manures is a preferred nutrient recycling strategy • Confined animal feeding operations have challenges to utilize livestock manure sustainably • Integration of livestock and cropping systems is possible on a farm or among farms • Nutrient balance is needed for environmental sustainability Livestock production in the United States (US) and Canada is diverse, but shows a common trend in most livestock sectors toward fewer farms producing the majority of animal products despite a large number of farms still small in production scale. The migration to larger and more concentrated animal feeding operations in beef finishing and poultry, swine, and dairy production allows processors to streamline supplies to meet market demand for abundant, low-cost livestock products, whether that be for packaged meat, dairy products, or eggs. With concentration of livestock operations comes the challenge of managing manures. When sufficient land is available and nutrients are needed, livestock manure is an excellent nutrient source and land application is the preferred method of recycling this resource. However, when livestock production is constrained in a geographical area and animal densities are high, manure may become an environmental liability with potentially greater risk for runoff and leaching of nutrients, emission of odors, ammonia, and greenhouse gases, and release to the environment of pathogens and chemicals of emerging concern. Addressing these challenges now and into the future requires learning from mistakes and adopting successful approaches. We describe different levels of integration between livestock and crop producers in New York, British Columbia, and the south-eastern US as learning opportunities to improve economic and environmental sustainability. Examples show that effective solutions should recognize (1) manure has value and is not just a cost, (2) farmers, farm advisors, extension educators, nutrient management planners, crop advisors, nutritionists, state agency personnel, regulators, and university researchers need to be active participants in development of solutions, and (3) change to a sustainable future requires a combination of government regulation and outcome-based incentives.  相似文献   

An ecosystem-based assessment of the Korean blue crab trammel net fishery in the Yellow Sea and management implications     

Inja Yeon  Mi Young SongMyoung Ho Sohn  Hak Jin HwangYang Jae Im  Do Hoon KimHee Won Park  Chang Ik Zhang 《Fisheries Research》2011,112(3):179-188

Landings in the blue crab, Portunus trituberculatus, fishery in Korean waters of the Yellow Sea have declined substantially from 11,000 t in the 1980s to 2,300 t in 2004. Blue crab habitat quality in the Yellow Sea has been degraded by anthropogenic activities including sand mining, land reclamation, and coastal pollution. Various traditional management measures have been implemented, including closed seasons during spawning and size limits, but these measures alone have been unsuccessful to conserve blue crab stocks. Consequently, a total allowable catch and a stock-rebuilding program using an ecosystem-based management approach were implemented in 2003 and 2006, respectively to rebuild blue crab stocks and restore habitats. This program involved assessment of both blue crab stock status and trammel-net fishery impacts at an ecosystem-level using an ecosystem-based fisheries assessment method ( [Zhang et al., 2009] and [Zhang et al., 2010]), which considered fishery data from catch and effort time-series, crab population biology, and ecosystem characteristics, including habitats and environmental conditions. Recent (2008) management status indices have shown significant positive change compared to conditions in 2000 with respect to sustainability of the stock and fishery and with regards to biodiversity and ecosystem habitat quality.  相似文献   

Thirty years of change and the future of Alaskan fisheries: Shifts in fishing participation and diversification in response to environmental,regulatory and economic pressures     

Anne H. Beaudreau  Eric J. Ward  Richard E. Brenner  Andrew O. Shelton  Jordan T. Watson  Jennifer C. Womack  Sean C. Anderson  Alan C. Haynie  Kristin N. Marshall  Benjamin C. Williams 《Fish and Fisheries》2019,20(4):601-619

Heterogeneity in human responses and decision‐making can contribute to the resilience of social–ecological systems in the face of environmental, political and economic pressures. In fishery systems worldwide, the ability of harvesters to maintain a diverse portfolio of fishing strategies is important for building adaptive capacity. We used a case‐study approach to examine the complexity of factors that inhibit or promote diversification in fisheries of Alaska, one of the major fishing regions of the world. Through a combination of harvest records and literature review, we explored shifts in participation and portfolio diversity in Alaskan fisheries over three decades. The four case‐studies examined the responses of fishers, fleets and communities to multiple, intersecting pressures, including biological declines, market and price dynamics, fishery privatization and the 1989 Exxon Valdez oil spill. These cases illustrate how stressors acting at multiple scales can encourage or constrain opportunities for diversification, and that these opportunities may be spread inequitably across participants. Overall, we found evidence for reduced participation and increasing specialization in Alaskan commercial fisheries. While numerous factors explain these trends, policies like individual quota systems and the increasing cost of entry into fisheries are forcing consolidation at local to regional scales. A portfolio approach to managing fisheries that reduces barriers to diversification and includes broad representation of resource users and communities in management may help to maintain opportunity and choice for fishers.  相似文献   

Effect of dietary supplementation of inulin and W. cibaria on haemato‐immunological parameters of hybrid surubim (Pseudoplatystoma sp)     

J.L.P. MOURIÑO  F. Do NASCIMENTO VIEIRA  A.B. JATOBÁ  B.C. Da SILVA  G.F.A. JESUS  W.Q. SEIFFERT  M.L. MARTINS 《Aquaculture Nutrition》2012,18(1):73-80

The dietary supplementation of prebiotics, probiotics and symbiotic in hybrid surubins (a Pseudoplatystoma corruscans and P. fasciatum cross) was evaluated for the effects on their autochthonous intestinal microbiota and on haematological and immunological parameters. A total of 160 fish were divided into four treatment groups with four replicates each. The treatment groups were fed with the following diets for 15 days: control diet without supplementation; 0.5% inulin (prebiotic) supplementation; Weissella cibaria (CPQBA 001‐10 DRM 02) (7.87 ± 0.2 log CFU g^?1) supplementation; or 0.5% inulin and W. cibaria supplementation (symbiotic group). The midgut intestines of the fish with the symbiotic diet supplementation had higher concentrations of lactic acid bacteria (7.07 ± 1.11 log CFU g^?1) and low levels of Vibrio spp (1.90 ± 0.60 log CFU g^?1) and Pseudomonas spp (2.23 ± 1.48 log CFU g^?1). In addition, increased erythrocytes and reduced circulating neutrophils were observed in this group. No differences in blood glucose, serum protein or lysozyme levels were detected between treatment groups. However, a higher concentration of total immunoglobulin was observed in fish fed with the probiotic and symbiotic diets. The addition of 0.5% inulin (prebiotic) thus W. cibaria (probiotic) to the diet of Pseudoplatystoma hybrid surubins reduce the number of pathogenic bacteria and stimulate the beneficial intestinal microbiota and may possibly alter their immune defence system.  相似文献