SnToxA,SnTox1, and SnTox3 originated in Parastagonospora nodorum in the Fertile Crescent     

Fariba Ghaderi  Bahram Sharifnabi  Mohammad Javan-Nikkhah  Patrick C. Brunner  Bruce A. McDonald 《Plant pathology》2020,69(8):1482-1491

The centre of origin of the globally distributed wheat pathogen Parastagonospora nodorum has remained uncertain because only a small number of isolates from the Fertile Crescent were included in earlier population genetic and phylogeographic studies. We isolated and genetically analysed 193 P. nodorum strains from three naturally infected wheat fields distributed across Iran using 11 neutral microsatellite loci. Compared to previous studies that included populations from North America, Europe, Africa, Australia, and China, the populations from Iran had the highest genetic diversity globally and also exhibited greater population structure over smaller spatial scales, patterns typically associated with the centre of origin of a species. Genes encoding the necrotrophic effectors SnToxA, SnTox1, and SnTox3 were found at a high frequency in the Iranian population. By sequencing 96 randomly chosen Iranian strains, we detected new alleles for all three effector genes. Analysis of allele diversity showed that all three effector genes had higher diversity in Iran than in any population included in previous studies, with Iran acting as a hub for the effector diversity that was found in other global populations. Taken together, these findings support the hypothesis that P. nodorum originated either within or nearby the Fertile Crescent with a genome that already encoded all three necrotrophic effectors during its emergence as a pathogen on wheat. Our findings also suggest that P. nodorum was the original source of the ToxA genes discovered in the wheat pathogens Phaeosphaeria avenaria f. sp. tritici 1, Pyrenophora tritici-repentis, and Bipolaris sorokiniana.  相似文献   

Comparison of growth,survivorship, seed production and shedding of eight weed species in a wheat crop in Western Australia     

Catherine P. D. Borger  Abul Hashem  Gurjeet S. Gill 《Weed Research》2020,60(6):415-424

Development of integrated weed management strategies is dependent on a thorough knowledge of the demography of individual species. The current research established eight winter or summer weed species in a winter annual wheat cropping system at Wongan Hills, Western Australia, and investigated emergence of the first cohort of each species, survivorship, plant size, seed production and seed shedding over three years (2016–2019). The winter weeds Bromus diandrus and Lolium rigidum emerged at the same time as the wheat crop, and the initial cohort of marked plants had 100% survival to seed production in each year. By comparison, other winter weed species like Hordeum leporinum, Rumex hypogaeus, Sonchus oleraceus and Polygonum aviculare frequently emerged later than the crop and had a lower percentage of plants surviving to seed production. However, individual S. oleraceus and P. aviculare plants had the greatest seed production compared to other species. All winter weeds had variable patterns of seed shedding between years, with the exception of L. rigidum. Summer weed species emerged at the same time, but plants in the initial cohort of each species did not always survive to produce seed. The early emergence and high survivorship of B. diandrus indicates high competitive ability, but shedding commenced at a similar time to L. rigidum and harvest weed seed control may be a viable control method for this species.  相似文献   

Phosphorus fractions and dynamics as affected by land-use changes in the Central Mexican highlands     

Jeannette S. Bayuelo-Jiménez  Takashi Muraoka  Eulogio de la Cruz-Torres  Esperanza Quintero-Ponce  Lydia C. Paredes-Gutiérrez  Mohammad Zaman 《Soil Use and Management》2020,36(2):240-249

Land-use change from forest to agriculture in the volcanic ash-derived soils of Mexico has increased over recent decades. It is likely that land uses and management practices, particularly fertilizer use have affected phosphorus (P) distribution and availability. The objective of this study was to evaluate the effects of land-use types (native forest and maize mono-cropping), and the related P addition, on the forms and distribution of soil P and their isotopic exchangeability. An Andisol, sampled from a cropping site, along with the contiguous area under native forest was treated with ³²P-labelled potassium phosphate (KH₂³²PO₄). The soil samples were extracted after incubation times of 7, 21, 35 and 49 days. Phosphorus content and ³²P recovery in fractions sequentially extracted were assessed for each incubation time. Total soil P was dominated by inorganic fractions (79 to 86%) in both land-use types. Resin-Pi, bicarbonate extractable inorganic P (Bic-Pi) and sodium hydroxide extractable inorganic P (NaOH_0.1-Pi) were all raised with P addition. However, the proportion of organic P fraction was reduced under cropped soil. The recovery of ³²P in soils with P addition indicates that resin-Pi, Bic-Pi and NaOH_0.1-Pi comprised nearly all the exchangeable P. In native soils with no P addition, more than 19% of the ³²P was recovered in Bic-Po and NaOH_0.1-Po forms. This finding indicates that organic P cycling is crucial when soil Pi reserves are presented in an inadequate amount. Ecologically based management has to be designed for replenishment and succeeding maintenance of soil organic P compounds to increase sustainable agricultural production.  相似文献   

Predicting adoption of double cropping in paddy fields of northern Iran: a comparison of statistical methods     

Solmaz Nadaf Fahmideh  Mohammad Sadegh Allahyari  Christos A. Damalas  Zahara Daghighi Masouleh  Mona Ghazi 《Paddy and Water Environment》2017,15(4):907-917

Factors affecting the adoption of double cropping were explored in rice farms of Fouman County of Guilan Province in northern Iran using artificial neural networks (ANNs), linear discriminant analysis (LDA), and logistic regression (LGR). Eleven factors (age, education, occupation, family size, type of farm ownership, distance to the agricultural service center, attending agricultural extension courses, use of financial resources and bank loans, number of domestic animals, area under cultivation, and social participation) were examined. An additional objective was to compare the ability of the three models in predicting the adoption of double cropping. ANNs showed an overall predictive power of 89.8%. LDA showed an overall predictive power of 83.2%, with seven of the eleven independent variables being effective on the adoption of double cropping. LGR indicated an overall predictive power of 87.6%, with eight of the eleven independent variables being effective on the adoption of double-rice cropping. ANNs showed higher power than LGR and LDA in predicting the adoption of double cropping. Based on all three methods used for analysis, the most important independent variables were social participation and area under cultivation (positive factors) as well as distance to the agricultural service center and family members (negative factors). Establishment of cooperatives or other kinds of farmers’ associations to foster social participation could motivate adoption of double cropping, particularly among small-scale farmers. To increase agricultural services, more local centers should be created in rural areas. The government should promote double cropping through effective incentives and technology transfer to small-scale farmers.  相似文献   

Spatial and temporal variation in otolith chemistry and its relationship with water chemistry: Stock discrimination of Sperata aor     

Aafaq Nazir  Mohammad Afzal Khan 《Ecology of Freshwater Fish》2019,28(3):499-511

Long‐whiskered catfish, Sperata aor (Hamilton 1822), is commercially important in food, ornamental and sport fisheries. The fish is mainly caught from the wild populations because its aquaculture practices are not commercialised. Inland fishery in the Ganga basin is mostly unorganised; hence, no published report is available on the trend of S. aor production from the selected habitat. In India, S. aor has been categorised vulnerable mainly due to natural and anthropogenic threats. Otolith chemistry shows variation with changing physico‐chemical conditions of the fish habitat. Therefore, the present study was conducted with the objective to analyse spatio‐temporal variations in water chemistry in relation to environmental factors; relationship between water and otolith chemistry; and spatio‐temporal variations in otolith chemistry to discriminate the stocks of S. aor inhabiting the River Ganga. Most of the element: Ca ratios in water samples did not show significant correlations with environmental factors, viz. temperature and conductivity. Only few element: Ca concentrations in otoliths were positively correlated to their corresponding ratios in the ambient water. In the selected study area, the S. aor populations were discriminated into four stocks possibly because of heterogeneous water chemistry at the sampling sites, and physical barriers. In the present study, otolith chemistry showed relatively low temporal variability as compared to spatial variability; thus, the classification accuracy of individuals to their original populations remained consistent over the selected time period. The findings could be useful in devising scientifically sound management strategies and/or any conservation plans for the vulnerable S. aor populations inhabiting the River Ganga.  相似文献   

Response of industrial hemp to Salsola kali subsp. tragus densities under organic and conventional fertilisation     

Mohammad Akrami-Dizaj  Vahid Sarabi 《Weed Research》2020,60(4):303-311

A 2-year field study was conducted to determine the effects of different nutrition systems and Salsola kali subsp. tragus densities on industrial hemp yield and its components. Experiments were conducted as a split plot in a randomised complete block design with three replicates. Factors were fertilisation (poultry manure, vermicompost and nitrogen fertiliser) as the main plot and weed density (0, 5, 10, 15 and 20 plants/m²) as the subplot. Results indicated that the maximum number of racemes per plant, seeds per raceme, 1000-seed weight, biomass, grain yield and harvest index (HI) of industrial hemp were obtained using vermicompost and were reduced with nitrogen fertiliser application. All measured properties in hemp plants decreased due to increasing S. kali subsp. tragus density, especially at 15 and 20 plants/m². The most significant reduction in hemp grain yield and its components was observed by increasing weed density with the application of nitrogen fertiliser. The application of vermicompost at high weed densities resulted in greater hemp grain yield and its components compared with nitrogen fertiliser. It is recommended to apply organic fertilisers, especially vermicompost at high S. kali subsp. tragus densities.  相似文献   

Development and testing of a surface roughness measurement device based on aerial ultrasonic reflections     

Okajima  Kenji  Nagaoka  Seiya  Islam  Mohammad Raihanul  Ito  Ryouei  Watanabe  Ken 《Paddy and Water Environment》2020,18(2):345-353

Paddy and Water Environment - Repairs of concrete irrigation channels in Japan are guided to a large extent by the degree to which their walls have degraded over decades of use. Current methods of...  相似文献   

Thermal,swelling and stability kinetics of chitosan based semi-interpenetrating network hydrogels     

Muhammad Omer Aijaz  Sajjad Haider  Fahad S. Al-Mubaddel  Rawaiz Khan  Adnan Haider  Abdulaziz Abdullah Alghyamah  Waheed A. Almasry  Mohammad Sherjeel Javed Khan  Muhammad Javid  Wajahat Ur Rehman 《Fibers and Polymers》2017,18(4):611-618

The present study is focused on studying the swelling kinetics, thermal and aqueous stabilities, and determination of various forms of water in the chitosan (CS) and polyacrylonitrile (PAN) blend and semi-interpenetrating polymer network (sIPN). CS/PAN blend hydrogel films were prepared by solution casting technique. The blend film with optimum swelling properties was selected for the synthesis of sIPN. CS in the blend was crosslinked with the vapors of Glutaraldehyde (GTA) to prepare sIPN. The fabricated CS/PAN blend and sIPN hydrogels films were characterized with Fourier transform infrared (FTIR), thermal gravimetric analysis (TGA) and field emission scanning electron microscope (FESEM). The kinetics of swelling, bound and unbound waters and aqueous stability were determined experimentally. FESEM showed good miscibility between CS and PAN, FTIR showed no chemical interaction between CS and PAN; however, it did show a doublet for the sIPN, TGA showed improved thermal stability and swelling kinetic followed second order kinetics. The degree of swelling of the sIPN hydrogels samples at room temperature varied from ~2200 % (with a fair degree of stability (~30 %)) to ~1000 % (with high degree of aqueous stability (43 %)) with increase in the crosslinking time. The calculated unbound water (W_UB) max., for the blend was 52.3 % whereas for the bound (W_B) the max., was 41.9 %. However, for sIPN hydrogel films, the W_UB water decreased (max. 21.0 %) where as the W_B increased (max. 52.0 %). The decrease in W_UB and increase in the W_B is attributed to the formation of a compact structure and increase in the contact area between the water and polymers in sIPN hydrogels due to the induction of new water contacting point in these hydrogel films, respectively.  相似文献   

The true nature of Ganoderma in Iran: Taxonomy based on ITS and mtSSU rDNA     

Somayeh Keypour  Hossein Riahi  Mohammad Reza Asef  Jafar Abdollahzadeh  Ali borhani  Naser Safaie 《Forest Pathology》2020,50(4)

The genus Ganoderma Karst. has broad‐spectrum usage in biotechnology, medicine and the food industry. The complexity of the morphology within species has led to uncertain identification in the past, but recent advancements in molecular identification methods have provided scientists with the opportunity to better understand the taxonomy of the species. The present study attempts for the first time to elucidate the distinctiveness of the Ganoderma species growing in Iran concerning those elsewhere in the world based on mitochondrial small subunit ribosomal DNA (mtSSU rDNA) and internal transcribed spacer (ITS) sequence data. The results disclosed that the G. lucidum Karst. samples collected in Iran are more similar to the European Ganoderma species than to the Asian (Chinese) one used in this study.  相似文献   

Comparison of three immunodiagnostic tests for experimental Heterophyes heterophyes infection in dogs     

Elshazly AM  Elsheikha HM  Rahbar MH  Awad SI 《Veterinary parasitology》2008,151(2-4):196-202

The aim of this study was to compare the performance of three in-house diagnostic tests, i.e. counter current immunoelectrophoresis (CCIE), intradermal (ID) and indirect fluorescent immunoassay (IFI), for the diagnosis of Heterophyes infection. One hundred and twenty puppies were randomly divided into eight groups (n=15/group). Heterophyes heterophyes infections were established in these puppies by administering a dose of 50 H. heterophyes encysted metacercariae/puppy by gavage. Forty puppies of similar age and sex were divided into eight groups, of five puppies each and were used as negative controls. Sera pooled from separate infected and uninfected groups were tested against H. heterophyes antigens, weekly for 8 weeks post-infection (PI). The ID assay detected infected puppies sooner than any of the serological tests. Sero-conversion was first detected 2 weeks PI by ID assay and 1 week later by CCIE and IFI assays. ID test performed well till the end of the experiment (sensitivity and specificity: 100% and 90%, respectively). Both IFI and CCIE assays had a sensitivity of 40% and 20%, respectively for early detection of antibody, which was less sensitive than ID but both assays were more specific (100%) than the ID assay. The lowest agreement was between ID and IFI tests (40.3%), whilst the highest was observed between CCIE and IFI tests (67.2%). Of the three evaluated methods, the ID test could be recommended for scientific and laboratory diagnosis of heterophyosis in naturally infected animals. However, since none of the investigated method are optimal (i.e, offers 100% specificity and sensitivity), the choice of test employed must depend on the aim of the study.  相似文献