Identification of potential genomic regions for egg weight by a haplotype-based genome-wide association study using Bayesian methods     

A. H. Khaltabadi Farahani  H. Mohammadi  M. H. Moradi  H. A. Ghasemi 《British poultry science》2020,61(3):251-257

ABSTRACT

1. Theoretically, haplotype blocks might be a more suitable alternative to SNP genotypes as they are usually better at capturing multi-allelic QTL effects, compared to individual SNP genotypes in genome-wide association studies. The objectives of this study were to identify genomic regions related to egg weight traits by Bayesian methods (BayesA, BayesB, and BayesN) that fit fixed-length haplotypes using GenSel software.

2. Genotypes at 294,705 SNPs, that were common on a 600K Affymetrix chip, were phased for an egg-laying hen population of 1,063 birds. Recorded traits included first egg weight (FEW) and average egg weight at 28, 36, 56, 66, 72 and 80 weeks of age.

2. Fitting 1Mb haplotypes from BayesB resulted in the highest proportion of genetic variance explained for the egg weight traits. Based on the trait, the genetic variance explained by each marker ranged from 27% to 76%.

3. Different haplotype windows associated with egg weight traits only explained a small percentage of the genetic variance.

4. The top one 1-Mb window on GGA1 explained approximately 4.05% of total genetic variance for the FEW. Candidate genes, including PRKAR2B, HMGA2, LEMD3, GRIP1, EHBP1, MAP3K7, and MYH were identified for egg weight traits.

5. Several genomic regions, potentially associated with egg weight traits, were identified, some of which overlapped with known genes and previously reported QTL regions for egg production traits.  相似文献   

Investigating the reduction of sodium adsorption ratio from agricultural waste by rice husk in batch scale and physical model of drain envelop     

Maryam Navabian  Ehsan Ghane  Mohammad Hosseinzade 《Paddy and Water Environment》2017,15(2):299-306

Sodium adsorption ratio (SAR) is one of the water quality indexes that whose is important due to reuse or depletion to environment. Solutes in drain water can be controlled by adsorption, chemical or biological reaction, organic envelope of drainage. Rice husk is the common option of drainage envelops in paddy fields. In this study, the ability of reduction of SAR by rice husk was evaluated in batch scale and physical model of drain envelops. In the batch experiments, the adsorption of SAR parameters was investigated by adding 2 g of rice husk into a 100 ml of sodium chloride solution. The results indicated that rice husk absorbed calcium, magnesium and sodium, respectively. By increasing the temperature, contact time and pH, adsorption of calcium, magnesium and sodium was increased; however, the higher concentration of sodium in soil solution reduced the percentage of adsorption. In a more realistic state, physical models of subsurface drainage in the paddy fields were made. Drainage envelope treatments included of rice husk (H), combination of 20 and 60 % of husk with gravel (H₂₀G₈₀ and H₆₀G₄₀) and a pipe without envelope (NE). Due to higher drain discharge and more sodium removal (lower SAR in drain water), treatment H with the discharge of 16.2 ml/min and SAR of 1.27 (meq/l)^0.5 was better in comparison with other treatments.  相似文献   

Independent and combined effects of Satureja khuzistanica essential oils and acetic acid on prevalence and intensity of fatty liver syndrome in broiler chickens     

Maryam Mirderikvandi  Heshmatollah Khosravinia  Bahman Parizadian Kavan 《Journal of animal physiology and animal nutrition》2020,104(1):166-177

Two hundred fifty two male Ross 308 broiler chicks were raised to examine the effects of Satureja khuzistanica essential oils (SkEO; 0, 200, 300, 400, 500 and 600 mg/bird/day) administrated via oral gavage and dietary supplementation of acetic acid (AA; 0 or 20 g/kg) in a 6 × 2 factorial fashion using a complete randomized block design with seven replicates of three birds each. In Day 34 of age, liver fat percentage decreased by increasing SkEO levels in a quadratic trend (p < .05). Oral gavag of 200 and 300 mg of SkEO decreased AST activity by 16.67% and 16.94%, respectively, compared with the control birds (p < .05). In Day 38 of age, liver percentage was greater by 0.37% in the birds received 400 mg SkEO than those given 500 mg (p < .05). Liver fat percentage decreased in the birds fed the acidified diet and received 300 and 500 mg SkEO as well as in the birds offered 200 and 400 mg of SkEO and fed non-acidified diet than those received acidified diet with no SkEO administration (p < .05). Prevalence of score zero for hepatocytic vacuolations and necrosis was 80.00% and 42.42% in the birds receiving 600 mg SkEO respectively. Median for relative frequency of scores for hepatocytic vacuolations and hepatocytic necrosis was lesser in the birds received SkEO by oral gavage compared with that of control birds (p < .05). In conclusion, administration of SkEO via oral gavage reduced liver fat in broiler chicken but no consistent dosage could be verified as the effective dosage for all ages concerned. The acidified diet per se showed no evident effect on liver fat at all ages considered. The SkEO × AA interaction exhibited promising but unreliable effects on liver colour score in market age (42 days).  相似文献   

Recovery of sperms bearing X chromosomes with different concentrations of magnetic nanoparticles in ram     

Maryam Moradi  Hadi Hajarian  Hamed Karamishabankareh  Leila Soltani  Bijan Soleymani 《Reproduction in domestic animals》2021,56(2):263-269

Pre-conceptual sex selection is still a highly debatable process whereby X and Y chromosome bearing spermatozoa are isolated before oocyte fertilization. Recently, magnetic nanoparticles (MNP) have been used to determine X and Y chromosomes bearing spermatozoa as a result of searching for a cheap, highly efficient method using non-toxic materials. This study aimed to recover the sperm bearing X chromosomes in ram with different concentrations of MNP and then evaluate the success of this method using polymerase chain reaction (PCR). Ram sperms were divided into four groups, treated with 0 (control), 50, 100 and 200 μg/ml MNP, respectively. MNP was used to restore sperm cells bearing X chromosomes. Upon recovery, the PCR was performed to identify the X and Y sperms, Methyl ThiazoleTetrazolium (MTT), to assess MNP toxicity and sperm viability and acridine orange (AO) to evaluate sperm DNA integrity. The results of PCR revealed that the treatment of spermatozoa- bearing X chromosomes with 50 μg/ml MNP had the highest effects on the recovery of X sperm rather than the other concentrations of MNP. However, the concentrations of MNP did not have any toxic effects on spermatozoa, sperm viability and, DNA integrity, but the high concentration of MNP (200 μg/ml) significantly reduced DNA integrity. According to MTT and AO results, the concentrations of MNP used in this study had no toxic effects on spermatozoa and did not reduce the sperm viability and DNA integrity, except that 200 μg/ml MNP significantly reduced DNA integrity.  相似文献   

A descriptive angiographic study of the uterine arteries during pregnancy,the postpartum period and CEH/pyometra in bitches     

Maryam Mahdipour  Asghar Mogheiseh  Mohammad Saeed Ahrari-Khafi 《Reproduction in domestic animals》2021,56(4):537-544

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Relationship between calving difficulty and fertility traits in first‐parity Iranian Holsteins under standard and recursive models          下载免费PDF全文

M.S. Mokhtari  M. Moradi Shahrbabak  A. Nejati Javaremi  G.J.M. Rosa 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2016,133(6):513-522

The main objective of this study was to estimate the genetic and phenotypic relationships between calving difficulty (CD) and fertility traits, including success at first service (SF), number of inseminations to conception (INS), interval from calving to first service (CTFS), interval between first and last service (IFL) and days open (DO), in first‐parity Iranian Holsteins under standard (SMMs) and recursive (RMMs) mixed models. The data analysed in this paper included 29 950 records on CD and fertility traits, collected in the time period from 1995 to 2014 by the Animal Breeding and Improvement Center of Iran. Under all observed SMMs and RMMs, five bivariate sire‐maternal grandsire models (ten bivariate analyses in total) were used for the analyses. Recursive models were applied with a view to consider that CD influences the fertility traits in the subsequent reproductive cycle and the genetic determination of CD and fertility traits by fitting CD as covariate for any of the fertility traits studied. The existence of such cause‐and‐effect is considered in RMMs but not in SMMs. Our results implied a statistically non‐zero magnitude of the causal relationships between CD and all the fertility traits studied, with the former influencing the latter. The causal effects of CD on SF (on the observed scale, %), INS, CTFS, IFL and DO were ?2.23%, 0.10 services, 1.93 days, 3.76 days and 5.61 days, respectively. Direct genetic correlations between CD and the fertility traits under both models were not statistically different from zero (95% HPD interval included zero), except for the correlation between CD and CTFS, which were 0.197 and 0.134 under SMM and RMM, respectively, indicating that genes associated with difficult births also increase intervals between calving and the first insemination afterwards. Comparison of both models by the deviance information criterion (DIC) demonstrated the plausibility of RMMs over SMMs.  相似文献   

Investigation of meteorological drought characteristics in Fars province,Iran     

H.R. Moradi  M. Rajabi  M. Faragzadeh 《CATENA》2011,84(1-2):35-46

Drought is a lack of moisture in nature, consistent or unnatural. The term consistent refers to a state of shortage, and unnatural refers to the deviation from an index of the regional natural condition. The objective of this research was to examine and forecast the intensity, duration, frequency and extent of droughts in Fars province. For this purpose, and in order to survey droughts in the province, a standard precipitation index (SPI) was determined as a selective index, considering its capacity to facilitate accurate positional analysis between various regions of the drought extent. For this, precipitation data within the same statistical period of 32 years (1968 to 1999) in 5 time scales of 3, 6, 12, 24 and 48 months from some 26 stations located within and out of the province were used, and the trends were assessed by using a time series analysis. At the next stage, RUN theory and Markov Chain were combined, on this basis to create transition probability and a steady matrix, and then the conditions of long term droughts in the province in terms of number and duration were forecast for the subsequent 10 years. The characteristics of the extent of drought were determined by using the Geographic Information System (GIS) with the help of geo-statistical methods. The results of the drought station surveys for the mentioned characteristics showed that the highest drought intensity (in terms of % deviation from normal) was at the Gozoon station and the longest duration of drought in months was at the Polkhan station; droughts both of long duration and with the highest frequency during the statistical period were observed at the Jahrom and Darshahy stations. The map of the extent of droughts showed higher intensity in the south and central regions of the province, while northern parts of the province were less sensitive to the effects of droughts. Also, the results of the maps of drought duration in various periods showed that droughts in the south of the province were of higher intensity and longer duration than elsewhere.  相似文献   

Molecular characterization and genetic relationship among almond cultivars assessed by RAPD and SSR markers     

B. Shiran  N. Amirbakhtiar  S. Kiani  Sh. Mohammadi  B.E. Sayed-Tabatabaei  H. Moradi 《Scientia Horticulturae》2007

RAPDs and SSRs were used to study the genetic diversity of Iranian almond cultivars and their relationship to important foreign cultivars and three related species. Eight unidentified almond Shahrodi cultivars and three wild almonds (Prunus communis, Prunus orientalis and Prunus scoparia) were also included. Of the primers tested, 42 (out of 80) RAPD and 18 (out of 26) SSR primers were selected for their reproducibility and high polymorphism. A total of 664 polymorphic RAPD bands were detected out of 729 bands. The number of presumed alleles revealed by the SSR analysis ranged from 3 to 10 alleles per locus with a mean value of 6.64 alleles per locus. Both techniques discriminated the genotypes very effectively, but only RAPDs were able to discriminate the cultivars Monagha and Sefied. Results demonstrated an extensive genetic variability within the tested cultivars as well as the value of SSR markers developed in peach for characterization of almond and related species of Prunus. Dice similarity coefficient was calculated for all pair wise comparisons and was used to construct a UPGMA dendrogram. For both markers a high similarity in dendrogram topologies was obtained although some differences were observed. All dendrograms, including that obtained by the combined use of both the marker data, depicted the phenetic relationships among the cultivars and species, depending upon their geographic region and/or pedigree information. Almond cultivars clustered with accession of P. communis showing their close relationship. P. orientalis and P. scoparia were clustered out of the rest of P. dulcis.  相似文献   

Chemical composition and in vitro antifungal activity of Sambucus ebulus and Actinidia deliciosa on the fish pathogenic fungus,Saprolegnia parasitica     

Mirmazloomi  Sina  Ghiasi  Maryam  Khosravi  Ali Reza 《Aquaculture International》2022,30(2):1037-1046

The aim of the present study was to determine the chemical composition of Sambucus ebulus and Actinidia deliciosa ethanolic extracts as well as their in vitro antifungal activity on the mycelial growth of the water mold, Saprolegnia parasitica. The preliminary minimum inhibition concentration (MIC) and minimum lethal concentration (MLC) were determined by the HeMP method and finally, concentrations of each extract ranging from 1 to 10% were prepared by an agar dilution method to assess the in vitro antifungal activity, quantitatively. Both herbal extracts inhibited growth of Saprolegnia hyphae in vitro. Complete in vitro growth inhibition was found at a concentration of ≥5% for S. ebulus, whereas it was not observed even at 10% concentration of A. deliciosa. Based on gas chromatography coupled with mass spectrometry (GC/MS) analysis, the main constituents of S. ebulus include monophthalate (66.17%), fatty acids (26.47%), phytol (4.25%), and acetic acid (2.11%). Using colorimetric assays, A. deliciosa contained phenolic contents at 162 mg gallic acid (GAE)/g DW and flavonoid contents at 2.31 mg quercetin (QE)/g DW. In conclusion, the results of this study indicated that S. ebulus and A. deliciosa showed some antifungal activities against S. parasitica with formerly exhibiting stronger activity (p < 0.05).

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Assessment of vitamin C different levels in aquaponic system on Nile tilapia (Oreochromis niloticus) and saffron (Crocus sativus): growth performances,hematology, serum biochemistry,and digestive enzyme activity     

Javanmardi  Sina  Rezaei Tavabe  Kamran  Rafiee  Gholamreza  Moradi  Saeed  Sivaji  Divya 《Aquaculture International》2022,30(4):2145-2163

The aim of this study was to investigate the possibility of improving the growth and physiological indices of plant and fish by adding different levels of ascorbic acid (vitamin C) to water in the aquaponic system using Nile tilapia (Oreochromis niloticus) and saffron plant (Crocus sativus). 240# fish (12.5?±?0.21 gr) and 120# saffron corms (2.8?±?0.12 gr) were randomly assigned to 15 experimental units and underwent treatments of adding 0 (control), 2, 4, 6, and 8 mg L^?1 ascorbic acid to water, every 6 days, for 8 weeks. The fish final weight and subsequently other growth performance indices increased in the treatment of 4 mg L^?1 vitamin C compared to other treatments (P?≤?0.05). Some growth performances of saffron plants such as saffron production, in treatment of 6 mg L^?1, were significantly higher than the control group and reached from 17.34?±?0.27 mg flower^?1 in the control group to 25.4?±?1.61 mg flower^?1 in treatment of 6 mg L^?1. Measuring the serum biochemical parameters of the fish showed that, in the treatment of 8 mg/L ascorbic acid, the cortisol content in the blood reached its maximum (21.49?±?2.42 µg dL^?1). The trypsin activity in proximal intestine and mid-intestine significantly increased in treatments of 2, 4, and 6 mg L^?1, respectively. The current experiment showed that, by adding 4–6 mg/L ascorbic acid to the aquaponic system water (every 6 days), the optimal levels of Nile tilapia and saffron plant growth performances would occur.

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