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为研究鸭疫里氏杆菌(RA) 16S rRNA变异与OmpA基因之间的关系,提取了RA吉林分离株JL-RA1和JL-RA3总DNA,并设计特异性引物扩增两株RA保护性抗原OmpA全基因序列.结果显示,扩增出的16S rRNA序列大小均为1478 bp,OmpA片段序列大小均为1164 bp,与预期结果一致.扩增的16S rRNA与GenBank中已知的RA 16S rRNA序列同源性高达99.0％ ～99.9％,扩增的OmpA序列与GenBank中已知的RA OmpA序列同源性达93.3％ ～ 100％,编码蛋白质的氨基酸序列同源性为96％～100％. 相似文献
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副猪嗜血杆菌的分离鉴定及16S rRNA序列分析 总被引：1，自引：1，他引：0
从云南某规模化养猪场病猪肺脏分离到1株革兰氏阴性小杆菌,经细菌生化鉴定、PCR鉴定和16S rRNA序列比对鉴定为副猪嗜血杆菌。抗生素药物敏感试验结果表明,分离菌株对四环素、红霉素、氯霉素、头孢噻吩高敏;对庆大霉素、氧氟沙星、诺氟沙星中敏;对磺胺甲唑耐药。16S rRNA分析结果表明,该分离株与GenBank中的Hps参考株AB078973(基因登录号)同源性为100%,将分离菌株鉴定为副猪嗜血杆菌。16S rRNA遗传进化关系表明,分离株与副猪嗜血杆菌3株血清5型参考株AB078972、AB078973、AB078974的16S rRNA序列位于一个分支上,遗传进化关系最近,它们之间的核苷酸同源性在99.0%~99.4%之间,初步鉴定为血清5型副猪嗜血杆菌,致病性试验结果表明,分离菌株对小白鼠有强致病性,命名为YN-1株。 相似文献
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本研究针对多杀性巴氏杆菌(Pm)特异性基因kmt1,进化保守基因16S rRNA基因,以及荚膜血清型A、B、D、E和F型对应的荚膜生物合成基因hayD-hayC、bcbD、dcbF、ecbJ和fcbD,设计特异性PCR扩增引物,采用PCR方法扩增相应基因和进行序列测定,并对分离菌株进行分子鉴定和同源性分析。结果显示,来自不同地区的分离菌株均含有Pm种特异性基因kmt1、A型荚膜生物合成基因hayD-hayC和16S rRNA基因。不同地区的分离株,kmt1基因的同源性为100%;A型荚膜生物合成基因hayD-hayC同源性大于99.9%;与国外牛源分离株的hayD-hayC基因的同源性大于98%;不同地区分离株的16S rRNA基因的同源性为100%,而与英国牛源分离株Pm338的16S rRNA基因的同源性高达99.93%。这些结果表明,在我国6个省市流行的牛出血性败血症由同一来源的荚膜血清A型多杀性巴氏杆菌所致,与英国牛源A型分离株Pm338具有共同的进化来源。 相似文献
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湖南省牛无浆体虫株分子生物学鉴定 总被引：1，自引：0，他引：1
用原虫16 S rRNA基因序列通用引物对湖南5个地区牛无浆体感染的阳性血液样品进行PCR扩增,经测序和序列拼接,获得5个无浆体样品16 S rRNA基因的部分序列,应用分子生物学软件进行分析,并根据所获得序列的保守区间设计特异性引物,进行PCR诊断方法的探讨性研究.结果表明,在通用引物下,5个地区无浆体感染的阳性血液样品均获得1 425 bp大小的虫体16 S rRNA基因条带;测序后5个无浆体16 S rRNA序列同源性均在97%～98%.证明5个分离虫株初步鉴定为牛边缘无浆体. 相似文献
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为了探讨鸭疫里默氏杆菌(Riemerella anatipestifer, RA)云南流行株的外膜蛋白A (OmpA)的基因序列差异及其与16S rRNA序列的相关性,PCR扩增18株云南流行株鸭疫里默氏杆菌OmpA基因及16S rRNA核苷酸序列,分别构建其系统进化树,分析其系统进化关系。结果表明,18株鸭疫里默氏杆菌OmpA基因分为2个群,其同源性分别为86%~99.2%和92.6%~100%。18株鸭疫里默氏杆菌16S rRNA基因同属1个群,同源性高达96.1%~100%。 RA-1、RA-2、RA-11和RA-39 4株分离株的OmpA基因位于进化树的同一个亚群,其16S rRNA基因也位于进化树的同一亚群,两者呈现出明显的相关关系,其他14株分离株的OmpA基因系统进化树与16S rRNA基因系统进化树无明显的相关关系。 相似文献
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为查明贵阳市花溪区麦坪镇某猪场仔猪发生呼吸道疾病的病因,对送检的2头病猪采集病料进行细菌分离培养、染色镜检、生化试验、PCR扩增及测序、药敏试验。结果:从病料样本中分离得到1株细菌,根据形态学和生化试验初步鉴定为副猪嗜血杆菌;应用细菌16S rRNA序列分析技术从分子水平对分离细菌进行分型鉴定,运用DNAStar软件与不同血清型副猪嗜血杆菌基因序列进行比对,发现分离菌与不同血清型副猪嗜血杆菌菌株16S rRNA序列同源且相似性为97.4%～100%,其中与血清5型相似性最高;系统进化分析显示,分离菌株与血清5型副猪嗜血杆菌进化关系最近;分离菌株对利福平、头孢氨苄、阿米卡星、环丙沙星、万古霉素敏感。结论:综合分离细菌传统鉴定方法和分子生物学鉴定方法的实验结果,确定分离菌株属于血清5型副猪嗜血杆菌。 相似文献
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为了鉴定引起水貂发生出血性肺炎的病原体,试验采用病原分离鉴定、分离株16S rRNA扩增与序列分析、分离株对小鼠致病力试验、分离株血清分型鉴定、大肠杆菌H基因型鉴定、分离株药敏试验和分离株动物感染试验对来自山东省、辽宁省、河北省和黑龙江省的28份具有典型出血性肺炎症状死亡水貂的病料进行鉴定。结果表明:混合感染12例,单一病原菌感染16例,镜检可见短小的阴性杆菌和两端钝圆的阴性长杆菌; 16S rRNA扩增与序列分析共分离出22株绿脓杆菌和18株大肠杆菌,其中有4株对小鼠致死率达到50%以上,9株对小鼠致死率在10%～40%;从22株绿脓杆菌中共分离出8株G型、7株E型和7株D型,未检测出大肠杆菌血清型,大肠杆菌H基因型为H11;绿脓杆菌分离株对环丙沙星、妥布霉素、阿米卡星等6种药物敏感,大肠杆菌分离株对环丙沙星、妥布霉素、阿米卡星等10种药物均耐药;大肠杆菌和绿脓杆菌分离株均可导致水貂死亡并造成肺泡壁毛细血管瘀血、脾脏淋巴细胞数量减少、肺脏上皮细胞坏死、红髓内巨噬细胞数量增多等明显病理变化。说明目前引起水貂出血性肺炎的病原体已由传统的绿脓杆菌单一感染逐渐转变为大肠杆菌和绿脓杆菌的混合感染。 相似文献
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《中国家禽》2016,(18)
为了解鸭疫里默氏杆菌(Riemerella anatipestifer,RA)贵州分离株外膜蛋白A(Omp A)和16 S r RNA基因序列的相关性以及与RA血清型之间的关系,对12株RA贵州分离株通过PCR分别扩增Omp A和16 S r RNA基因,并对其构建系统进化树和分析其系统进化关系。结果显示,12株RA分离株Omp A基因分为2个群,其核苷酸和氨基酸序列同源性分别为96.9%~100.0%和98.4%~100.0%;Omp A蛋白中有规律的变异位点为100(R/G)、143(S/P)、145(T/I)和268(S/P)。12株RA分离株16 S r RNA基因同属1个群,其核苷酸序列同源性为99.4%~100.0%。结果表明,12株RA贵州分离株Omp A基因和16 S r RNA基因序列所属的基因群无明显相关性,并且与RA血清型的分型也无直接关联。 相似文献
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为了解西昌猪肺炎支原体的遗传变异情况,对西昌市Mhp分离株XC01的16S rRNA和P46基因部分序列进行PCR扩增和序列分析,并构建NJ树。结果显示,XC01的16S rRNA和P46基因片段的长度分别为1 146 bp和1 059 bp,与Mhp参考株的核苷酸序列同源性分别为97.5%～99.8%和98.6%～99.4%;构建的NJ树显示不同地方的Mhp株未形成明显的地理分支。结果表明,Mhp分离株的16S rRNA和P46基因序列高度保守,在遗传演化中未发生太大的变化。研究结果为猪肺炎支原体的分子遗传变异研究和开展分子流行病学调查提供参考依据。 相似文献
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为了解贵州省三穗县鸭疫里默氏杆菌（Riemerella anatipestifer，RA）的流行血清型、毒力和耐药情况，本试验从贵州省三穗县6个规模养鸭场临床疑似RA感染的病鸭体内分离出6株分离菌，对病原菌进行分离鉴定、毒力基因检测和耐药性分析。细菌分离鉴定结果显示，分离菌在巧克力琼脂培养基上长出表面光滑、圆形半透明的滴状菌落；革兰氏染色呈阴性短小杆菌，瑞氏染色呈两极浓染；分离菌均不具运动性，尿素、触酶和氧化酶试验均为阳性，符合RA生化特性，将6株分离菌分别命名为SS-RA1~SS-RA6；6株分离菌的16S rRNA基因序列与NCBI上RA参考菌株的基因序列相似性≥98%，说明6株分离菌均是RA；SS-RA1~SS-RA4为血清2型且含有8种毒力基因（OmpA、CAMP、wza、AS87_04050、Fur、SIP、TbdR1和luxE基因），SS-RA5和SS-RA6为血清11型，缺失AS87_04050基因，仅含有上述其余7种毒力基因；动物回归试验结果显示，攻毒组雏鸭均全部死亡，对照组雏鸭未表现明显临床症状，表明6株分离菌对雏鸭均有致病力；药敏试验结果显示，6株分离菌仅对羧苄西林、哌拉西林、头孢他啶、头孢氨苄、头孢曲松、头孢拉定和头孢哌酮7种抗菌药物敏感，对其他13种抗菌药物均表现不同程度的耐药，对氨基糖苷类和大环内酯类抗菌药物的耐药率为100%。本试验成功分离得到6株RA，为贵州省三穗县鸭疫里默氏杆菌病的疫苗选择和药物防治提供理论依据。 相似文献
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Isolates of Malassezia pachydermatis from healthy dog skin and from dogs with atopic dermatitis were molecularly characterized using internal spacer 1 (IGS1) region analyses, and their phospholipase A2 activity and pH growth profiles were then characterized in vitro. The percentage of isolates from healthy dogs that had the following IGS1 subtypes (isotype, %) were as follows: 1A, 6%; 1B, 27%; 1C, 11%; 2A, 6%; 2B, 6%; 3A, 11%; 3C, 3%; and 3D, 24%. In contrast, 9% of isolates from dogs with atopic dermatitis were isotype IB and 91% were isotype 3D, indicating that isolates of subtype 3D were the most prevalent in dogs with atopic dermatitis. Production of phospholipase A2 was statistically higher in isolates of subtype 3D than in the other subtypes. The subtype 3D isolates showed enhanced growth on alkaline medium compared with non-3D subtype isolates. The main clinical sign of canine Malassezia dermatitis is waxy exudates on the skin, which predispose the patient to development of a yeast overgrowth of the subtype 3D. Increased phospholipase A2 production may be involved in the inflammatory process associated with Malassezia dermatitis. 相似文献
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Mototaka Hiki Masaru Usui Tetsuo Akiyama Michiko Kawanishi Mai Tsuyuki Saiki Imamura Hideto Sekiguchi Akemi Kojima Tetsuo Asai 《Irish veterinary journal》2014,67(1):14
Background
The aim of our study was to investigate the possible etiology of avian colibacillosis by examining Escherichia coli isolates from fecal samples of healthy broilers.Findings
Seventy-eight E. coli isolates from fecal samples of healthy broilers in Japan were subjected to analysis of phylogenetic background, virulence-associated gene profiling, multi-locus sequence typing (MLST), and antimicrobial resistance profiling. Phylogenetic analysis demonstrated that 35 of the 78 isolates belonged to group A, 28 to group B1, one to group B2, and 14 to group D. Virulence-associated genes iutA, iss, cvaC, tsh, iroN, ompT, and hlyF were found in 23 isolates (29.5%), 16 isolates (20.5%), nine isolates (11.5%), five isolates (6.4%), 19 isolates (24.4%), 23 isolates (29.5%), and 22 isolates (28.2%) respectively. Although the genetic diversity of group D isolates was revealed by MLST, the group D isolates harbored iutA (10 isolates, 71.4%), iss (6 isolates, 42.9%), cvaC (5 isolates, 35.7%), tsh (3 isolates, 21.4%), hlyF (9 isolates, 64.3%), iroN (7 isolates, 50.0%), and ompT (9 isolates, 64.3%).Conclusions
Our results indicated that E. coli isolates inhabiting the intestines of healthy broilers pose a potential risk of causing avian colibacillosis. 相似文献16.
Ryll M Christensen H Bisgaard M Christensen JP Hinz KH Köhler B 《Journal of veterinary medicine. B, Infectious diseases and veterinary public health》2001,48(7):537-546
A total of 44 bacterial strains obtained from 49 clinically healthy ducklings of different ages originating from four different farms were identified as members of the species Riemerella anatipestifer (RA) using conventional biochemical test methods. Numerical analysis of the whole-cell fatty acid patterns of these isolates resulted in two different clusters, one of which showed a similar pattern to that of the type strain of RA. Strains having a different fatty acid methyl esters (FAME)-profile (cluster II) were designated R. anatipestifer-like (RA-like). Sequencing of 16S rRNA genes of RA-like field isolates revealed 99% identity to RA. The significance of these observations are discussed. The present findings document for the first time that RA seems to represent a normal part of the pharyngeal flora of healthy Pekin ducks. 相似文献
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Complete 1D gene sequences of 13 Indian foot-and-mouth disease virus (FMDV) type C field isolates and a vaccine strain (C-Bombay/64) were determined. All the field isolates showed a greater genetic homogeneity (95-100%) among themselves and were 19.7-21.2% divergent from the vaccine strain. In the phylogenetic analysis, the Indian field isolates formed a separate lineage (lineage VII) different from the previously identified six lineages (lineage I-VI) in type C FMDV [J. Virol. 66 (1992) 3557]. The vaccine strain was grouped with European lineage (lineage II). Comparison of the deduced amino acid sequences of antigenic sites A and C of field isolates showed no significant variation from the vaccine strain. One-way serological relationship determined in ELISA showed antigenic closeness of the field isolates with C-Bombay/64. 相似文献
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Two new monoclonal antibodies (MAbs), D6D8D5 and B3E6F9, both directed against Haemophilus paragallinarum serovar C hemagglutinating (HA) antigen, were produced, and characteristics of the MAbs were compared with those of the previously described MAb F2E6 in dot-blot and hemagglutination-inhibition (HI) tests using two representative H. paragallinarum strains each of serovars A, B, and C strains and 55 Japanese serovar C field isolates. MAb D6D8D5 and MAb F2E6 reacted with all serovar C strains and field isolates in the dot-blot test. However, MAb D6D8D5 showed various degrees of inhibition of the HA activity of field isolates. In the enzyme-linked immunosorbent assay-competition test, MAb D6D8D5 did not compete with MAb F2E6. MAb B3E6F9 reacted with strain S1, serovar C but not with strain Modesto, serovar C in both dot-blot and HI tests. Three out of 55 field isolates did not react with MAb B3E6F9. Neither MAb reacted with the serovar A and B strains. 相似文献
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根据鸭疫里默氏杆菌（RA）16SrDNA基因序列设计引物,对1株RA阳性株、9株临床分离鉴定的RA、3株大肠杆菌、1株多杀性巴氏杆菌和1株沙门氏菌进行PCR扩增,结果所有RA均出现643bp特异性扩增条带,其余非RA则均未扩增出特异性条带,表明该对引物及建立的PCR具有很强的特异性。优化的PCR反应体系能检出RA的最低DNA量为20pg。菌落直接PCR是增强RA快速检测鉴定的手段。应用PCR对病料组织直接进行RA检测,脑组织为首选检测对象,具有良好的实际应用意义。 相似文献