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M. Matsuda Y. Asami T. Miyazawa T. Samata Y. Isayama M. Honda Y. Ide 《Veterinary research communications》1994,18(2):93-98
Analysis of chromosome-sized DNA and genome typing ofTaylorella equigenitalis NCTC11184, Kentucky 188, and five strains ofT. equigenitalis isolated in Japan were carried out. The three restriction enzymes used,ApaI,NaeI andNotI, cleaved the genomic DNAs of five Japanese strains ofT. equigenitalis into relatively limited numbers of restriction fragments, which were well resolved on crossed-field gel electrophoresis (CFGE). The respective profiles after CFGE of the restriction fragments from all five strains were essentially identical to each other after digestion byApaI,NaeI orNotI. Hence it appears that these strains have a common genome type with respect to these three restriction enzymes. It was also shown that the respective profiles from these strains were essentially different from those ofT. equigenitalis NCTC11184 and those of Kentucky 188 after digestion withApaI,NaeI orNotI.Abbreviations CFGE
crossed-field gel electrophoresis
- FIGE
field inversion gel electrophoresis
- PFGE
pulsed-field gel electrophoresis 相似文献
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Matsuda M. Miyazawa T. Moore J.E. Buckley T.C. Thomas L.A. 《Veterinary research communications》1998,22(4):217-224
The profiles, after digestion with ApaI or NotI and pulsed-field gel electrophoresis (PFGE), of genomic DNA from 18 strains of Taylorella equigenitalis isolated in Ireland were of three different types. The 13 strains in one of these types gave PFGE profiles identical to that of an American prototype strain, Kentucky 188, but different from strain NCTC11184T and from a strain isolated in Japan.Eight additional strains isolated in the United States gave four distinct types of genomic PFGE profiles. All four types were different from that of T. equigenitalis NCTC11184T or that of the Japanese strain. The profile of three strains of one type was identical to that of Kentucky 188. 相似文献
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为阐明西北部分地区三叶草属(Trifolium L.)根瘤菌遗传多样性及系统发育地位,于2007年12月采用16S rDNA PCR-RFLP与16S rDNA全序列分析,对50株分离自新疆和陕西地区的三叶草属根瘤菌进行系统研究。结果表明:所有供试菌株产生了5种16S rDNA基因型,归属于根瘤菌属(Rhizobium)、土壤杆菌属(Agrobacterium)、叶杆菌属(Phyllobacterium)3个系统发育分支,表现出较为丰富的共生固氮体系多态性。其中,CCNWXJ0140在系统发育树中与三叶草叶杆菌模式菌株P.trifolii PETP02关系较近,序列相似性为98.9%,也扩大了可与三叶草形成共生关系的根瘤菌种类的范围。通过不同地区同一寄主的三叶草根瘤菌的比较,发现其共生关系因地理分布不同而具有多样性,因此,对于丰富三叶草根瘤菌资源及其开发利用具有重要意义。 相似文献
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根据NCBI中已报道的嗜麦芽窄食单胞菌16S rDNA基因序列设计引物,对两株来源于猪“高热病”病料中的疑似嗜麦芽窄食单胞菌PSM-5、PSM-6进行PCR扩增。将扩增产物克隆至pMD18-T载体上,并转化到DH5α中。抽取质粒模板,进行PCR和双酶切鉴定并测序,从分子水平上予以鉴定。两株菌的16S rDNA基因扩增片段的核苷酸序列（GenBank登录号为GQ267816和GQ267817）与已经报道的嗜麦芽窄食单胞菌分离株的16S rDNA序列的相似性均在96.78%以上,最高达99.93%。本试验对通过16S rDNA鉴定嗜麦芽窄食单胞菌提供一定参考,同时对猪“高热病”的诊断治疗奠定细菌学方面的基础,对其发病机制的探讨提供依据。 相似文献
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乳白香青分泌吲哚乙酸内生细菌的16S rDNA鉴定 总被引：3，自引：1，他引：2
对乳白香青2株分泌吲哚乙酸（IAA）的内生细菌的16S rDNA基因片段进行扩增、测序,并与GenBank中的4条相似序列进行比对分析,构建系统发育树。研究结果表明,2菌株分泌IAA的能力均较强,其IAA的产量分别为62.03和36.50μg/mL。形态学鉴定表明,RA5菌体为杆状,大小为（2.22-4.50）μm×（1.00-1.22）μm,革兰氏阳性;RC5菌体杆状,大小（1.59-2.98）μm×（0.62-1.04）μm,革兰氏阴性。系统学分析初步确定RA5为蜡状芽孢杆菌（Bacillus cereus）,RC5为芽孢杆菌属（Bacil-lus）的成员。 相似文献
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J.S. Fenner M.F. Anjum G.C. Pritchard J. Errington M.J. Woodward 《Research in veterinary science》2010,89(1):48-57
Leptospira have a worldwide distribution and include important zoonotic pathogens yet diagnosis and differentiation still tend to rely on traditional bacteriological and serological approaches. In this study a 1.3 kb fragment of the rrs gene (16S rDNA) was sequenced from a panel of 22 control strains, representing serovars within the pathogenic species Leptospira interrogans, Leptospiraborgpetersenii, and Leptospirakirschneri, to identify single nucleotide polymorphisms (SNPs). These were identified in the 5′ variable region of the 16S sequence and a 181 bp PCR fragment encompassing this region was used for speciation by Denaturing High Performance Liquid Chromatography (D-HPLC). This method was applied to eleven additional species, representing pathogenic, non-pathogenic and intermediate species and was demonstrated to rapidly differentiate all but 2 of the non-pathogenic Leptospira species. The method was applied successfully to infected tissues from field samples proving its value for diagnosing leptospiral infections found in animals in the UK. 相似文献
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广州桑树植原体分子检测及多样性初探 总被引：3，自引：1，他引：2
采用植原体16S-23S rDNA区段的通用引物对P1/P7和巢式引物对Rm16F2/Rm16R1,建立了快速准确的桑树植原体巢式PCR检测技术。对广州的两个桑树品种资源圃中的部分桑树品种进行了植原体分子检测,结果在两个资源圃中均发现有植原体存在。对巢式PCR的扩增产物(16S rDNA片段)进行了限制性片断长度多态性(RFLP)分析,显示出3种RFLP带型,暗示桑树植原体存在多样性。对所得植原体16S rDNA片段进行序列测定,并与其它植物植原体作亲缘关系分析,结果表明该植原体的16S rDNA序列与其它植物病原植原体之间的同源性为83.3%~99.9%,并初步判断所检测到的桑树植原体属于16S rI组。 相似文献
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湖南省猬迭宫绦虫ITS及5.8S rDNA的克隆及序列分析 总被引：1，自引：1，他引：0
利用聚合酶链反应(PCR)扩增猬迭宫绦虫rDNA的ITS-1、5.8S及ITS-2片段,将PCR扩增出的片段纯化后克隆至pGEM-T Easy载体,重组质粒通过菌落PCR鉴定后,对阳性菌落进行序列测定并进行序列分析。结果显示,所获得的ITS及5.8S rDNA序列总长存在一定差异,为1 369~1 393 bp,包含部分的18、28S及全部的ITS-1(662~687 bp)5、.8S(138 bp)及ITS-2(457~475 bp)序列。由于猬迭宫绦虫ITS序列种内相对保守,种间差异较大,故可作为种间遗传变异研究的标记。 相似文献
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通过16S rDNA全序列的DNA同源性分析以及PCR-RFLP分析,对从山东某奶牛场送检的腹泻死亡的犊牛内脏中分离到的一株沙门氏菌进行了血清型鉴定,得到其系统发育树状图。系统发育树分析表明,该沙门氏菌菌株与GENEBANK上发表的27株沙门氏菌的16S rDNA同源性较高,为97~99%,该沙门氏菌菌株与鼠伤寒沙门氏菌LT2(Salmonellatyphimurium LT2)的同源性最高,达到了99.7%,表明该沙门氏菌菌株为鼠伤寒沙门氏菌。 相似文献
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应用保守引物BD1和BD2对7个鸡蛔虫凉山州分离株的核糖体DNA内转录间隔区(ITS)及5.8S rDNA序列进行PCR扩增和序列测定,并用ITS-1、ITS-2序列重构鸡蛔虫与其他蛔虫的系统发育关系。测序结果显示所获得的鸡蛔虫ITS及5.8S rDNA序列大小为974~989 bp,同源性为98.9%~100.0%。其中ITS-1、5.8S rDNA和ITS-2片段大小分别为473~481、157和337~359 bp,同源性分别为98.5%~100.0%、100.0% 和98.5%~100.0%。系统发育树显示所有鸡蛔虫分离株聚在同一分支,能与其他蛔虫相区别。研究结果表明,鸡蛔虫的ITS-1、ITS-2序列种内变异小,但种间差异大,故可作为分子标记用于鸡蛔虫的虫种鉴定,为鸡蛔虫的分子分类、分子流行病学调查和种群遗传的进一步研究奠定基础。 相似文献
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Strain SK-1 was isolated from naturally infected Tincaeus. Its morphological, physiological and biochemical experiments, 16S rDNA sequence were performed, and its antibiotic sensitivity was analyzed by Kriby-Bauer disc diffusion method. The results showed that strain SK-1 was gram negative bacteria,with short rod shape and oxidase-positive.Its physiological and biochemical characteristics were consistent with the physiological and biochemical characteristics of Vibrio anguillarum. The length of this 16S rDNA sequence was 1447 bp, which showed 99% homology with Vibrio anguillarum, GenBank database number was KF978124. Phylogenetic analysis indicated it grouped together with Vibrio anguillarum. So it was confirmed that strain SK-1 was Vibrio anguillarum. The antibiotic sensitivity presented that strain SK-1 was highly sensitive to 13 antibiotics such as doxycycline,tetracycline,minocycline, and middle sensitive to 9 antibiotics such as streptomycin, ceftriaxone, trimethoprim, and resistant to bacitracin and lincomycin. These results will be beneficial to the identification of Vibrio anguillarum and prevention and control of bacterial disease in Tincaeus. 相似文献
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为研究不同病例发病动物的发病原因,并对不同病例病料分离出的细菌进行16S rDNA同源性分析,本试验对10种不同病例发病动物病料进行细菌分离培养并对分离获得的细菌进行微生物学鉴定,设计1对16S rDNA基因引物,对分离出的10株细菌进行PCR扩增、测序及16S rDNA同源性分析。结果显示,分离获得的10株细菌经微生物学鉴定均为大肠杆菌,10株大肠杆菌中哺乳类动物病例犬乳房炎、犬子宫蓄脓、犬肺炎、犬皮肤化脓疮、奶牛乳房炎、犊牛腹泻6株大肠杆菌之间16S rDNA同源性为100.0%,家禽类动物病例肉鸽腹泻、肉鸡腹泻、野鸡腹泻和白孔雀腹泻4株大肠杆菌之间16S rDNA同源性也为100.0%,10株不同病例动物来源大肠杆菌之间16S rDNA同源性为97.5%~100.0%。本试验探明了10种不同病例发病动物的发病原因均为大肠杆菌感染引起,且10株大肠杆菌16S rDNA之间具有高度同源性。 相似文献
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以广州动物园小熊猫体内分离出的蛔虫为研究对象,运用PCR方法,以保守引物NC5和NC2扩增其核糖体DNA（rDNA）的内转录间隔区（ITS）和5.8S序列,并对扩增后的片段进行纯化、克隆至pGEM-Teasy载体、转化、测序和序列分析,以鉴定小熊猫蛔虫的种类。结果显示2条蛔虫样品的ITS及5.8S rDNA序列基本一致,总长为913 bp,样品间序列相似性为99.7%。将序列与GenBankTM公布的相关序列进行比较分析,结果显示2条蛔虫的ITS及5.8S序列与黑熊横走贝蛔虫（Baylisascaris transfuga注册号AB571304）相似性分别为98.1%、98.4%,与大熊猫西氏贝蛔虫（Baylisascaris schroederi注册号JN210912）相似性分别为96.9%、97.1%,与猪蛔虫（Ascaris suum注册号AB571302）相似性分别为89.9%、90.1%,与人蛔虫（Ascaris lumbricoides注册号AB571296）相似性分别为89.8%、90.1%,ITS-1序列与浣熊贝蛔虫（Baylisascaris procyonis注册号AB053230）相似性分别为92.0%、92.3%。研究结果表明小熊猫体内分离的蛔虫可能为贝蛔属蛔虫,从而为蛔虫的进一步分类、鉴定和遗传变异研究奠定了基础。 相似文献
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Sasaki Y Yamamoto K Kojima A Tetsuka Y Norimatsu M Tamura Y 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2000,62(12):1275-1281
Clostridium chauvoei causes blackleg, which is difficult to distinguish from the causative clostridia of malignant edema. Therefore, a single-step PCR system was developed for specific detection of C. chauvoei DNA using primers derived from the 16S-23S rDNA spacer region and partial 23S rDNA sequences. The specificity of the single-step PCR system was demonstrated by testing 37 strains of clostridia and 3 strains of other genera. A 509 bp PCR product, which is a C. choauvoei-specific PCR product, could be amplified from all of the C. chauvoei strains tested, but not from the other strains. Moreover, this single-step PCR system specifically detected C. chauvoei DNA in samples of muscle from mice 24 hr after inoculation with 100 spores of C. chauvoei, and in clinical materials from a cow affected with blackleg. These results suggest that our single-step PCR system may be useful for direct detection of C. chauvoei in culture and in clinical materials from animals affected with blackleg. 相似文献