共查询到19条相似文献，搜索用时 187 毫秒
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西农萨能羊泌乳高峰期和初期乳腺组织差异表达基因研究 总被引：1，自引：0，他引：1
利用抑制性削减杂交和实时定量PCR研究西农萨能羊泌乳高峰期差异表达基因,结果表明成功构建泌乳高峰期和泌乳初期乳腺组织差异表达削减eDNA文库,以GAPDH为指标检测文库削减效率为2^5倍,共获得78个阳性克隆,PCR检测插入片段主要分布在150～1000bp,挑选插入片段不等的30个克隆测序,获得25个有效序列,代表18个基因。对文库中所包含的血清淀粉样蛋白A3（SAA3）,ATP结合盒亚家族G成员2（ABCG2）,心脏型脂肪酸结合蛋白（H-FABP）和黄嘌呤脱氢酶（XDH）进行实时定量PCR检测,发现上述4个基因在泌乳高峰期乳腺组织中的表达水平分别是泌乳初期的17．0,7．7,16．3和1．7倍。结论：构建的消减文库可用于筛选泌乳高峰期差异基因,已鉴定的4个基因很可能是调控产奶量和乳成分变化的候选基因。 相似文献
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猪肺炎支原体诱导家蝇幼虫抑制性消减文库的构建 总被引：2，自引：0，他引：2
采用抑制性消减杂交技术(suppression subtractive hybridization,SSH)构建猪肺炎支原体(Mycoplasma hyopneumonia,Mhp)诱导家蝇幼虫后产生差异表达基因的消减cDNA文库,并利用反向Northern杂交技术获得差异基因.结果表明,随机挑取的阳性克隆的大小均为200～750 bp,通过斑点杂交技术共筛选出186个差异基因片段,对其克隆、测序及同源性分析后鉴定出20种编码蛋白的基因片段和21个无同源序列.家蝇幼虫经猪肺炎支原体诱导后产生与抗病原体相关的基因及大量的未知基因. 相似文献
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为了解与家蚕第2白卵(w-2)性状形成相关的差异表达基因信息,以家蚕正常型黑卵及其第2白卵近等基因系的转色期蚕卵为材料,构建抑制消减杂交(SSH)文库,筛选差异表达基因。对SSH文库中部分克隆的测序分析表明,该文库对差异表达基因的富集性较好。随机挑选SSH文库中的300个克隆制作家蚕cDNA芯片,对家蚕正常型黑卵及第2白卵近等基因系转色期蚕卵进行检测,获得11个差异表达基因。对这11个差异表达基因进行实时荧光定量RT-PCR验证分析,其结果与芯片数据分析结果趋势一致,在正常型黑卵与第2白卵近等基因系之间,这些基因的表达差异为0.1倍至数千倍。 相似文献
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牦牛外周血单个核细胞抑制消减cDNA文库的构建及部分差异表达分子的克隆分析 总被引：2，自引：0，他引：2
为筛选牦牛外周血单核细胞(PBMC)差异性基因,以刀豆素A(ConA)和脂多糖(LPS)联合刺激的PBMC cDNA为实验组,未经诱导刺激的PBMC cDNA为驱动组,利用抑制性消减杂交技术(SSH)构建了丝裂原诱导刺激PBMC的消减文库并对其部分阳性克隆进行了EST序列分析.从消减文库中随机挑取16个阳性克隆,进行PCR鉴定,显示克隆的重组率大于93%,插入片段大小大部分集中在200 bp～1 000 bp之间.随机挑取100个克隆进行测序及同源性分析,初步获得27条差异表达基因片段,其中24个为已知基因,3个为新ESTs序列;随机选择非重复的6个差异表达的序列设计引物,以半定量PCR方法验证其消减效率.结果显示,均从构建的消减文库中扩增到目的片段,其中5个为诱导性差异表达分子,1个为诱导特异性表达分子,说明该文库有较高的质量.本研究应用抑制消减杂交技术构建了牦牛PBMC的差异表达cDNA文库,并高通量克隆鉴定了相关功能基因片段,表明该技术手段有助于快速发现牦牛新功能基因. 相似文献
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为筛选与线虫感染性相关的基因,本研究以猪蛔虫为对象,构建猪蛔虫感染期幼虫差异表达消减cDNA文库,为研究线虫期特异性发育的分子机制奠定基础。分别提取感染期幼虫和其它各期幼虫及成虫的总RNA,纯化mRNA后,采用Clontech公司PCR-selectTM试剂盒进行反转录合成cDNA并进行抑制消减杂交(SSH),构建猪蛔虫感染期幼虫差异表达的消减cDNA文库,并采用Southern斑点杂交进行消减效率的检测。随机从文库中抽取45个克隆进行测序及在线BLAST分析。试验结果表明,感染期幼虫差异表达的消减cDNA文库具有较强的特异性;在得到的41个表达序列标签(ESTs)中,有40个ESTs与已报道的基因有较高的相似性,主要代表猪蛔虫第三期幼虫基因和成虫头部基因,有1个cDNA片段可能代表新基因。猪蛔虫感染期幼虫差异表达消减cDNA文库的成功构建,为进一步研究幼虫发育差异表达基因的功能奠定了基础。 相似文献
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为了筛选与湖羊发情相关的候选功能基因,试验以发情期湖羊卵巢组织cDNA为试验组,乏情期的湖羊卵巢组织cDNA为对照组,采用抑制性消减杂交(SSH)技术构建湖羊卵巢组织消减cDNA文库,并对筛选获得的功能基因进行生物信息学分析。结果表明:应用SSH技术成功构建了湖羊发情期卵巢组织消减cDNA文库;共挑取89个克隆进行测序分析,获得27个已知物种的同源基因序列和3个Novel序列;随机挑取16个阳性克隆进行PCR扩增,插入片段主要分布在150~750 bp之间;对27个已知同源基因进行功能分类,其中酶功能相关基因5个、核糖核酸结合功能相关基因10个、载体运输功能相关基因2个、调节功能相关基因3个、转运功能相关基因3个、未分类基因4个。说明试验成功筛选获得湖羊发情相关候选功能基因。 相似文献
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旨在利用抑制消减杂交技术构建鹅就巢与产蛋cDNA基因文库,筛选就巢母鹅上调与下调表达的基因.以就巢期和产蛋期鹅卵巢组织互为检测子和驱动子,进行正反双向消减杂交,获得鹅卵巢差异表达基因文库.从双向文库随机挑选单菌落进行PCR验证,结果表明文库质量良好.选取654个阳性克隆进行测序分析,获得641条表达序列标签(ESTs).对ESTs进行去除载体序列、质量检测、聚类及拼接,经BLASTn比对,有166条ESTs找到与之匹配的同源序列,其中92个是功能基因.比较就巢与产蛋SSH文库,发现就巢SSH库中参与细胞凋亡、信号转导及细胞结构的基因出现频率较高;产蛋特异性基因文库中参与物质能量代谢、细胞防御的基因较多;尚有许多差异片段属于未知功能蛋白或理论推定蛋白.结果提示,催乳素受体、抗苗勒管激素以及雌激素受体基因在就巢期上调表达可能与鹅就巢行为的启动与维持有关.该结果为进一步研究鹅就巢行为分子调控机制奠定基础. 相似文献
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为了探讨家蚕早期胚胎性别决定的分子机制,以非减数分裂孤雌生殖(AMP)和双精雄核发育(BSA)技术获得的家蚕单一性别早期(2~24 h)发育蚕卵为材料,利用抑制消减杂交(SSH)技术构建了正向和反向抑制消减杂交cDNA文库。在正向与反向抑制消减杂交文库中分别随机选择62个和46个克隆测序,分别获得43种和29种cDNA序列,其中25个为新的cDNA序列。生物信息学分析显示,抑制消减杂交文库中与单性生殖有关的高温、低温、辐射等诱导表达基因出现的频次较高。对部分文库序列进行半定量RT-PCR分析表明,这些基因在两种单性生殖早期发育胚胎中存在差异表达。 相似文献
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抑制性消减杂交技术在细菌活的非可培养状态研究中的应用 总被引：1，自引：0，他引：1
在基因分离与克隆中,构建各种cDNA文库是近些年在发现新基因及研究基因功能常用的基础工具之一。其中,抑制性消减杂交技术是一种高效分离差异表达基因的方法,在分离筛选细菌活的非可培养状态与正常菌株差异基因中,应用这种研究方法是研究细菌VBNC状态株毒力、致病性和耐药性及菌株遗传分化关系的重要途径。本文旨在介绍SSH构建消减cDNA文库在原核生物中的应用及对其在细菌VBNC状态新基因筛选中的应用前景进行综合论述,并对其进一步研究提出了展望。 相似文献
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本研究旨在对山羊乙酰辅酶A合成酶2（acetyl-CoA synthetase 2,ACSS2）基因进行克隆和生物信息学分析,并检测其在山羊不同泌乳时期乳腺组织中的表达量变化。以山羊乳腺组织RNA为模板,采用RT-PCR方法扩增并克隆山羊ACSS2基因完整CDS区序列,对测序结果进行生物信息学分析,并对ACSS2基因在山羊不同泌乳时期乳腺组织中的表达量进行分析。结果显示,山羊ACSS2基因CDS区序列长2 106 bp,编码701个氨基酸;山羊ACSS2基因与牛、马、人、犬、猪、小鼠和鸡的同源性分别为97.8%、92.0%、91.3%、91.3%、91.1%、88.1%和73.3%。蛋白理化性质分析结果表明,ACSS2蛋白分子质量为78.72 ku,理论等电点为6.03,属于酸性蛋白;跨膜结构和信号肽分析表明,ACSS2蛋白不含跨膜结构和信号肽;结构域分析表明,该蛋白含有1个乙酰辅酶A合成酶N端结构域。亚细胞定位分析结果表明,该蛋白主要分布在内质网（44.4%）、线粒体（33.3%）、细胞质（11.1%）和细胞核（11.1%）中。蛋白质结构预测发现ACSS2蛋白含有α-螺旋（29.10%）、延伸链（21.54%）、β-转角（9.84%）及无规则卷曲（39.52%）。实时荧光定量PCR分析结果表明,ACSS2基因在不同泌乳时期均有表达,其中在泌乳中期表达量最高,在干奶期表达量最低。本试验结果为进一步研究山羊ACSS2基因在脂质代谢过程中的功能及转录调控机制提供了参考。 相似文献
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Leitner G Merin U Krifucks O Blum S Rivas AL Silanikove N 《Veterinary immunology and immunopathology》2012,147(3-4):202-210
The effects of mammary gland bacterial infection and stage of lactation on leukocyte infiltration into the mammary gland were compared among cows, goats and sheep. Animals were at two stages of lactation: mid or late. In mid-lactation animals, bacterial-free glands and coagulase negative Staphylococcus (CNS)-infected glands were compared. In late lactation only uninfected glands were studied. Of mid-lactation bacteria-free animals, goats had the highest number of leukocytes and % polymorphonuclears (PMNs), whereas sheep had the lowest and leukocytes number in cows were intermediate between sheep and goats. Based on %PMN, two cell clusters were found in sheep, which overlapped with the parallel cell clusters of cows and goats, but with a slightly higher number of leukocytes in each cell cluster. At late lactation, goats had higher values for %PMN and leukocyte numbers in comparison to cows, which had a similar cellular profile to sheep. The cellular immune response to CNS infection was similar for the three animal species, although the number of cells was different, while the basal cell level at mid-lactation and especially at the end of lactation was species specific. 相似文献
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旨在筛选奶山羊cAMP应答元件结合蛋白CREB（cAMP response element binding protein）基因的siRNA,揭示干扰该基因后对乳腺上皮细胞中乳脂合成相关基因表达及甘油三酯合成的影响。本研究通过qRT-PCR方法从西农萨能奶山羊乳腺组织中扩增CREB基因完整的CDS区,进行序列分析和不同泌乳时期表达水平分析,合成靶向CREB基因的siRNA,利用荧光定量PCR筛选有效siRNA,并检测脂质合成相关基因的表达,采用试剂盒检测细胞内甘油三酯含量。结果表明：1）克隆得到全长为984 bp的奶山羊CREB基因的CDS区（GenBank登录号：MK158073）,并对其进行生物信息学分析。2）该基因在奶山羊泌乳盛期乳腺组织的表达量为干奶期的1.93倍（P<0.05）。3）成功筛选到靶向CREB基因的有效siRNA,干扰效率为72%（P<0.01）;并将其在奶山羊乳腺上皮细胞进行转染,通过qRT-PCR检测脂质合成相关基因的表达,与对照组相比,干扰CREB基因后显著抑制了FASN、ACACA、SCD1、FABP3、LPL、CPT1B、GPAM和DGAT2基因表达量（P<0.05）,并显著增加了HSL基因表达量（P<0.05）;且细胞内甘油三酯含量被显著下调（P<0.05）。综上所述,CREB基因在奶山羊原代乳腺上皮细胞中很可能通过调控脂质代谢相关基因的表达及甘油三酯含量对山羊的乳脂合成过程发挥重要作用。 相似文献
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miR-92a对奶山羊乳腺上皮细胞增殖及凋亡的调控分析 总被引：2，自引：1，他引：1
miRNAs是对哺乳动物乳腺组织发育及泌乳机能进行调控的重要因子。本研究依据已有的关中奶山羊乳腺组织miRNA表达谱,选择不同泌乳时期差异表达的miR-92a为研究对象,探究miR-92a对山羊乳腺上皮细胞（GMEC）增殖及凋亡的调控作用,并挖掘其潜在的调控基因。采用荧光定量PCR、MTT检测、EdU检测及流式细胞术,检测miR-92a在不同泌乳时期乳腺组织的表达情况,并在细胞水平检测miR-92a对乳腺上皮细胞增殖、凋亡及细胞周期的调控作用。利用RNA-seq技术,分析过表达miR-92a乳腺上皮细胞中的差异表达基因。qRT-PCR结果显示,miR-92a在奶山羊泌乳初期乳腺组织中表达量极显著高于泌乳中期（P<0.01）,表明miR-92a可能对奶山羊泌乳性状有重要的调控作用。GMEC过表达miR-92a后,试验结果显示：与NC对照组比较,miR-92a过表达组的EdU阳性细胞数极显著减少（P<0.01）,S期的细胞数显著下降、G1期的细胞数显著增加,同时miR-92a组的凋亡细胞数目显著增加（P<0.05）。采用RNA-seq,构建了miR-92a过表达mRNA文库,发现下调基因54个,上调基因160个。GO terms及KEGG通路分析显示差异表达基因调控乳腺上皮细胞多种生物学功能。以上结果表明miR-92a促进GMEC凋亡、抑制其增殖,测序结果进一步证明miR-92a对奶山羊乳腺发育及泌乳性能具有潜在的调控作用。 相似文献
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WGCNA鉴定奶山羊妊娠至泌乳期乳腺发育关键基因 总被引：2，自引：0，他引：2
旨在通过加权基因共表达网络分析（weighted gene co-expression network analysis，WGCNA）筛选奶山羊不同生理阶段乳腺发育的关键基因。本研究从GEO数据库中下载奶山羊不同生理阶段（妊娠46天、70天、90天、110天和产后40天）的乳腺组织微阵列数据集GSE14008，使用R语言的WGCNA包对数据进行共表达分析。将得到的模块与生理阶段进行关联分析，选择目标模块，并根据连接度选出枢纽基因。使用DAVID网站对模块进行富集分析后，使用String网站构建模块的蛋白互作网络，并使用Cytoscape软件得到核心基因，最终与枢纽基因取交集得到目标基因。对18个样本的8 443个基因进行加权基因共表达分析，得到30个模块，并选出4个与不同生理阶段相关的目标模块及每个模块的30个枢纽基因，同时也得到4个模块的蛋白互作网络及每个网络的20个核心基因。最终，4个模块共得到13个与乳腺发育相关的目标基因（UQCR、RGL2、NOTCH1、PTBP1、PPP5C、FZR1、UBE2L3、TNF、MAT2A、ITGB2、GPR18、JAK1、CSN2）。本研究通过WGCNA、GO富集分析和PPI网络等生物信息学技术，阐明了不同生理时期乳腺发育的关键过程，及在这些过程中起关键作用的基因，这为进一步研究乳腺发育机制提供了新的思路和线索。 相似文献
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The purpose of this study was to select the key genes of mammary gland development at different physiological stages in dairy goats by weighted gene co-expression network analysis(WGCNA). GSE14008 mammary gland tissue microarray data set of dairy goats at different physiological stages (pregnancy 46 days, 70 days, 90 days, 110 days and 40 days postpartum) was downloaded from GEO database, and co-expression analysis was carried out using WGCNA package of R language. The target modules were selected by correlation analysis between the modules and physiological stages, and the hub genes were selected according to the connectivity degree. After enrichment analysis of the modules using DAVID website, the protein-protein interaction network of the modules was constructed using String website and the core genes were obtained using Cytoscape software, and finally the target genes were obtained from intersection of core genes and hub genes. A total of 8 443 genes from 18 samples were analyzed for co-expression of weighted genes. The 30 modules were obtained, and 4 target modules related to different physiological stages and 30 hub genes of each module were selected. Meanwhile, protein-protein interaction network of 4 modules and 20 core genes of each network were also obtained. Finally, 13 target genes related to mammary gland development were obtained from the 4 modules, which were UQCR, RGL2, NOTCH1, PTBP1, PPP5C, FZR1, UBE2L3, TNF, MAT2A, ITGB2, GPR18, JAK1 and CSN2 genes. The key processes of mammary gland development at different physiological stages and the genes that played the key role in these processes were elucidated by WGCNA, GO enrichment analysis, PPI network and other bioinformatics techniques, which provided a new idea and clue for the further research on the mechanism of mammary gland development. 相似文献
17.
Su WJ Chang CJ Peh HC Lee SL Huang MC Zhao X 《American journal of veterinary research》2002,63(2):241-246
OBJECTIVE: To examine apoptosis in infiltrated neutrophils during involution of mammary glands and compare them with those obtained during late and peak lactation, and to measure oxidative stress and activities of antioxidant enzymes and determine involvement of free radicals in apoptosis of infiltrated neutrophils. SAMPLE POPULATION: Neutrophils from mammary gland secretions of 8 goats at 4 stages (late and peak lactation and 1 and 2 weeks after end of lactation). PROCEDURE: DNA fragmentation was evaluated to characterize apoptosis. Concentration of thiobarbituric acid reactive substances (TBARS) was used to evaluate oxidative stress. Activities of superoxide dismutase and glutathione peroxidase were determined. RESULTS: Neutrophils from secretions obtained after end of lactation of all goats and from late-lactation milk of some goats underwent prominent apoptosis, whereas neutrophils from peak lactation secretions did not. Higher lipid peroxidation and lower antioxidant enzyme activities in neutrophils during involution were observed, compared with those during late and peak lactation. A significant negative correlation existed between TBARS concentrations and antioxidant enzyme activities during the nonlactating period. CONCLUSIONS AND CLINICAL RELEVANCE: Apoptosis is a feature of infiltrated neutrophils during involution of mammary glands in goats. This feature may allow prompt resorption and clearance of infiltrated neutrophils without damaging surrounding tissues. Increased oxidative stress in infiltrated neutrophils from secretions obtained after end of lactation is probably related to a deficiency in antioxidant enzyme activities. Understanding the relationship between apoptosis and oxidative stress will lead to new strategies for manipulating involution and reducing tissue damage. 相似文献
18.
7 chamois-coloured mountain goats were used to investigate histologically and histochemically the processes of involution and redevelopment of the mammary gland after a lactation period of 8 to 10 months. Tissue specimens were obtained by incision biopsy at drying-off two months prepartum and afterwards in intervals of 8-16 days up to parturition. The findings of this investigation were compared with results of two former investigations, in which involution and proliferation of the gland were studied separately, thus precluding an overlapping of the two processes. At drying-off, after an 8 to 10 month-lactation, sections indicative of active lactation occurred concomitantly with sections at various stages of involution, as well as early stages of redeveloping alveoli. At 16 days post drying-off, the sections indicating lactation at first examination were in a stage of maximum involution and transformation. Thus, the time required for involution was reduced by half compared to drying-off at peak lactation. At 32 days post drying-off, stages of proliferation predominated with only a few involuting glands. Specimens obtained thereafter contained only redeveloping glands. The histological and histochemical differentiation between areas of involution and those of proliferation may present difficulties during the mid-portion of the dry period. There appears to be an association between the length of the time interval from drying-off to parturition and the rate of tissue transformation in the caprine mammary gland; the rate is increased when the duration of the dry period is reduced. 相似文献